HEADER OXIDOREDUCTASE 11-JAN-16 5HI6 TITLE THE HIGH RESOLUTION STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM YERSINIA TITLE 2 PESTIS COMPLEX WITH METHOTREXATE AS CLOSED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS CO92; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 GENE: FOLA, AK38_2080; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, DIHYDROFOLATE REDUCTASE, YERSINIA PESTIS, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,N.MALTSEVA,Y.KIM,M.MAKOWSKA-GRZYSKA,R.MULLIGAN,L.PAPAZISI, AUTHOR 2 W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 5 15-NOV-23 5HI6 1 DBREF REVDAT 4 27-SEP-23 5HI6 1 LINK REVDAT 3 22-NOV-17 5HI6 1 REMARK REVDAT 2 10-FEB-16 5HI6 1 TITLE JRNL REVDAT 1 03-FEB-16 5HI6 0 JRNL AUTH C.CHANG,N.MALTSEVA,Y.KIM,M.MAKOWSKA-GRZYSKA,R.MULLIGAN, JRNL AUTH 2 L.PAPAZISI,W.F.ANDERSON,A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL THE HIGH RESOLUTION STRUCTURE OF DIHYDROFOLATE REDUCTASE JRNL TITL 2 FROM YERSINIA PESTIS COMPLEX WITH METHOTREXATE AS CLOSED JRNL TITL 3 FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 18557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6946 - 4.8198 1.00 2597 140 0.1792 0.2058 REMARK 3 2 4.8198 - 3.8270 1.00 2583 154 0.1365 0.1812 REMARK 3 3 3.8270 - 3.3437 1.00 2593 153 0.1471 0.1769 REMARK 3 4 3.3437 - 3.0381 1.00 2624 137 0.1674 0.1884 REMARK 3 5 3.0381 - 2.8205 1.00 2611 120 0.1934 0.2489 REMARK 3 6 2.8205 - 2.6542 1.00 2618 131 0.1943 0.2377 REMARK 3 7 2.6542 - 2.5213 1.00 2558 164 0.1850 0.2961 REMARK 3 8 2.5213 - 2.4116 1.00 2570 181 0.1824 0.2592 REMARK 3 9 2.4116 - 2.3188 1.00 2642 101 0.1927 0.3072 REMARK 3 10 2.3188 - 2.2388 0.99 2565 152 0.2034 0.2518 REMARK 3 11 2.2388 - 2.1688 0.95 2492 138 0.2051 0.3133 REMARK 3 12 2.1688 - 2.1068 0.89 2295 121 0.2201 0.2412 REMARK 3 13 2.1068 - 2.0513 0.80 2130 106 0.2259 0.3370 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2717 REMARK 3 ANGLE : 0.551 3696 REMARK 3 CHIRALITY : 0.043 383 REMARK 3 PLANARITY : 0.003 489 REMARK 3 DIHEDRAL : 13.403 1592 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7250 33.2277 29.5705 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.0918 REMARK 3 T33: 0.1035 T12: -0.0253 REMARK 3 T13: -0.0240 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.3691 L22: 0.5171 REMARK 3 L33: 0.8960 L12: 0.0130 REMARK 3 L13: -0.0124 L23: 0.1831 REMARK 3 S TENSOR REMARK 3 S11: -0.0522 S12: -0.1281 S13: 0.1545 REMARK 3 S21: -0.0437 S22: -0.1727 S23: -0.0539 REMARK 3 S31: -0.0310 S32: 0.0450 S33: -0.3337 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0076 30.4370 43.4953 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.1673 REMARK 3 T33: 0.1881 T12: 0.0071 REMARK 3 T13: 0.0108 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.0469 L22: 0.4527 REMARK 3 L33: 0.3387 L12: 0.1227 REMARK 3 L13: -0.1944 L23: -0.1405 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: -0.0932 S13: 0.0884 REMARK 3 S21: 0.1055 S22: 0.0086 S23: 0.0109 REMARK 3 S31: -0.0644 S32: -0.1420 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9838 33.3176 37.7363 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.1972 REMARK 3 T33: 0.2032 T12: -0.0257 REMARK 3 T13: -0.0483 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 0.4536 L22: 0.2921 REMARK 3 L33: 0.0831 L12: 0.0580 REMARK 3 L13: -0.3046 L23: 0.0672 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: -0.1118 S13: 0.0128 REMARK 3 S21: 0.0984 S22: -0.0446 S23: -0.1347 REMARK 3 S31: -0.0202 S32: 0.3183 S33: -0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1767 36.1720 25.8007 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: 0.1993 REMARK 3 T33: 0.2073 T12: -0.0187 REMARK 3 T13: -0.0148 T23: 0.0726 REMARK 3 L TENSOR REMARK 3 L11: 0.6181 L22: 0.3201 REMARK 3 L33: 0.9323 L12: 0.1752 REMARK 3 L13: -0.4877 L23: -0.4615 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: 0.0092 S13: 0.0290 REMARK 3 S21: -0.0580 S22: -0.2570 S23: -0.2480 REMARK 3 S31: -0.1083 S32: 0.2952 S33: -0.1999 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0781 3.3667 47.6161 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1412 REMARK 3 T33: 0.1116 T12: 0.0013 REMARK 3 T13: 0.0073 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.1321 L22: 0.0856 REMARK 3 L33: -0.0074 L12: 0.1250 REMARK 3 L13: -0.1835 L23: -0.0752 REMARK 3 S TENSOR REMARK 3 S11: 0.1374 S12: -0.1753 S13: 0.0524 REMARK 3 S21: -0.0327 S22: -0.0702 S23: -0.0850 REMARK 3 S31: -0.1264 S32: 0.1576 S33: 0.0101 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7958 7.3780 42.2505 REMARK 3 T TENSOR REMARK 3 T11: 0.1430 T22: 0.1406 REMARK 3 T33: 0.0794 T12: -0.0296 REMARK 3 T13: -0.0019 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.0190 L22: 0.1006 REMARK 3 L33: 0.0438 L12: -0.0088 REMARK 3 L13: 0.1053 L23: -0.0517 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: -0.3452 S13: 0.1136 REMARK 3 S21: -0.2167 S22: -0.0091 S23: 0.1464 REMARK 3 S31: 0.2018 S32: -0.2471 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9211 -5.7313 41.5229 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.0916 REMARK 3 T33: 0.0955 T12: 0.0183 REMARK 3 T13: 0.0204 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.0722 L22: 0.1099 REMARK 3 L33: 0.0152 L12: -0.0625 REMARK 3 L13: 0.2064 L23: -0.0624 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: 0.0243 S13: -0.0518 REMARK 3 S21: -0.0266 S22: -0.0242 S23: 0.1348 REMARK 3 S31: 0.0476 S32: -0.0407 S33: -0.0038 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4788 -11.2435 50.6312 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1547 REMARK 3 T33: 0.1854 T12: 0.0025 REMARK 3 T13: 0.0237 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.1536 L22: 0.2355 REMARK 3 L33: 0.3021 L12: -0.1101 REMARK 3 L13: -0.0615 L23: -0.1517 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.0473 S13: -0.2518 REMARK 3 S21: 0.1324 S22: -0.0907 S23: -0.1003 REMARK 3 S31: 0.0618 S32: 0.0824 S33: -0.0605 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5921 6.7863 49.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.1246 REMARK 3 T33: 0.0988 T12: 0.0040 REMARK 3 T13: 0.0046 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.3691 L22: -0.0041 REMARK 3 L33: 0.0534 L12: -0.0061 REMARK 3 L13: 0.1405 L23: 0.0487 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: -0.1798 S13: 0.1555 REMARK 3 S21: 0.0797 S22: 0.0226 S23: -0.0107 REMARK 3 S31: -0.0396 S32: 0.0124 S33: 0.0037 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2080 11.4936 37.4715 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.1487 REMARK 3 T33: 0.0870 T12: -0.0197 REMARK 3 T13: -0.0067 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.1308 L22: 0.1069 REMARK 3 L33: 0.5386 L12: -0.1168 REMARK 3 L13: -0.4059 L23: -0.1256 REMARK 3 S TENSOR REMARK 3 S11: 0.2976 S12: -0.0311 S13: -0.2273 REMARK 3 S21: -0.0450 S22: 0.1238 S23: -0.0656 REMARK 3 S31: -0.0350 S32: 0.0766 S33: 0.2787 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7529 8.5626 42.7679 REMARK 3 T TENSOR REMARK 3 T11: 0.0962 T22: 0.1563 REMARK 3 T33: 0.1246 T12: 0.0033 REMARK 3 T13: -0.0324 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.1576 L22: -0.0164 REMARK 3 L33: 0.1887 L12: 0.0919 REMARK 3 L13: -0.1416 L23: -0.0126 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: -0.1199 S13: 0.1271 REMARK 3 S21: 0.0514 S22: -0.1888 S23: 0.1931 REMARK 3 S31: 0.0578 S32: 0.2953 S33: -0.0118 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791208 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, HKL-3000 REMARK 200 STARTING MODEL: 3Q1H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 0.1M HEPES, 30 REMARK 280 % PEG4000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.07550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.97100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.31150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.97100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.07550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.31150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 66 CG CD OE1 NE2 REMARK 470 ASN B -1 CG OD1 ND2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 410 O HOH A 414 1.88 REMARK 500 O HOH B 424 O HOH B 440 1.92 REMARK 500 O HOH B 418 O HOH B 446 2.02 REMARK 500 O HOH B 435 O HOH B 439 2.03 REMARK 500 O ARG B 159 O HOH B 301 2.04 REMARK 500 O HOH B 350 O HOH B 430 2.06 REMARK 500 O HOH B 438 O HOH B 447 2.10 REMARK 500 O HOH B 380 O HOH B 416 2.12 REMARK 500 OH TYR A 129 O HOH A 301 2.16 REMARK 500 O HOH B 400 O HOH B 423 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MSE A 17 O REMARK 620 2 HOH A 318 O 70.4 REMARK 620 3 HOH A 353 O 74.4 138.8 REMARK 620 4 HOH A 371 O 67.1 77.8 107.4 REMARK 620 5 HOH A 426 O 136.2 72.1 148.1 83.7 REMARK 620 6 HOH A 429 O 132.7 149.0 72.2 92.3 77.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 203 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 71 O REMARK 620 2 ASP B 12 OD1 154.8 REMARK 620 3 ASP B 12 OD2 156.7 46.9 REMARK 620 4 GLU B 119 OE2 88.8 99.5 74.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 202 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 8 O REMARK 620 2 ILE B 15 O 110.8 REMARK 620 3 HOH B 353 O 74.5 105.0 REMARK 620 4 HOH B 424 O 134.0 111.9 78.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTX A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTX B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP90544 RELATED DB: TARGETTRACK DBREF1 5HI6 A 1 160 UNP A0A0B6NYF5_YERPE DBREF2 5HI6 A A0A0B6NYF5 1 160 DBREF1 5HI6 B 1 160 UNP A0A0B6NYF5_YERPE DBREF2 5HI6 B A0A0B6NYF5 1 160 SEQADV 5HI6 SER A -2 UNP A0A0B6NYF EXPRESSION TAG SEQADV 5HI6 ASN A -1 UNP A0A0B6NYF EXPRESSION TAG SEQADV 5HI6 ALA A 0 UNP A0A0B6NYF EXPRESSION TAG SEQADV 5HI6 SER B -2 UNP A0A0B6NYF EXPRESSION TAG SEQADV 5HI6 ASN B -1 UNP A0A0B6NYF EXPRESSION TAG SEQADV 5HI6 ALA B 0 UNP A0A0B6NYF EXPRESSION TAG SEQRES 1 A 163 SER ASN ALA MSE ILE ILE SER LEU ILE ALA ALA LEU ALA SEQRES 2 A 163 ALA ASP ARG VAL ILE GLY MSE GLU ASN ALA MSE PRO TRP SEQRES 3 A 163 HIS LEU PRO ALA ASP LEU ALA TRP PHE LYS ARG ASN THR SEQRES 4 A 163 LEU ASN LYS PRO VAL ILE MSE GLY ARG LYS THR PHE GLU SEQRES 5 A 163 SER ILE GLY ARG PRO LEU PRO GLY ARG LEU ASN ILE VAL SEQRES 6 A 163 ILE SER SER GLN PRO GLY THR ASP GLU ARG VAL THR TRP SEQRES 7 A 163 ALA ALA SER ILE GLU GLU ALA LEU ALA PHE ALA GLY ASN SEQRES 8 A 163 ALA GLU GLU VAL MSE VAL MSE GLY GLY GLY ARG VAL TYR SEQRES 9 A 163 LYS GLN PHE LEU ASP ARG ALA ASN ARG MSE TYR LEU THR SEQRES 10 A 163 HIS ILE ASP ALA GLU VAL GLY GLY ASP THR HIS PHE PRO SEQRES 11 A 163 ASP TYR GLU PRO ASP GLU TRP GLU SER VAL PHE SER GLU SEQRES 12 A 163 PHE HIS ASP ALA ASP GLU ALA ASN SER HIS SER TYR CYS SEQRES 13 A 163 PHE GLU ILE LEU GLU ARG ARG SEQRES 1 B 163 SER ASN ALA MSE ILE ILE SER LEU ILE ALA ALA LEU ALA SEQRES 2 B 163 ALA ASP ARG VAL ILE GLY MSE GLU ASN ALA MSE PRO TRP SEQRES 3 B 163 HIS LEU PRO ALA ASP LEU ALA TRP PHE LYS ARG ASN THR SEQRES 4 B 163 LEU ASN LYS PRO VAL ILE MSE GLY ARG LYS THR PHE GLU SEQRES 5 B 163 SER ILE GLY ARG PRO LEU PRO GLY ARG LEU ASN ILE VAL SEQRES 6 B 163 ILE SER SER GLN PRO GLY THR ASP GLU ARG VAL THR TRP SEQRES 7 B 163 ALA ALA SER ILE GLU GLU ALA LEU ALA PHE ALA GLY ASN SEQRES 8 B 163 ALA GLU GLU VAL MSE VAL MSE GLY GLY GLY ARG VAL TYR SEQRES 9 B 163 LYS GLN PHE LEU ASP ARG ALA ASN ARG MSE TYR LEU THR SEQRES 10 B 163 HIS ILE ASP ALA GLU VAL GLY GLY ASP THR HIS PHE PRO SEQRES 11 B 163 ASP TYR GLU PRO ASP GLU TRP GLU SER VAL PHE SER GLU SEQRES 12 B 163 PHE HIS ASP ALA ASP GLU ALA ASN SER HIS SER TYR CYS SEQRES 13 B 163 PHE GLU ILE LEU GLU ARG ARG MODRES 5HI6 MSE A 1 MET MODIFIED RESIDUE MODRES 5HI6 MSE A 17 MET MODIFIED RESIDUE MODRES 5HI6 MSE A 21 MET MODIFIED RESIDUE MODRES 5HI6 MSE A 43 MET MODIFIED RESIDUE MODRES 5HI6 MSE A 93 MET MODIFIED RESIDUE MODRES 5HI6 MSE A 95 MET MODIFIED RESIDUE MODRES 5HI6 MSE A 111 MET MODIFIED RESIDUE MODRES 5HI6 MSE B 1 MET MODIFIED RESIDUE MODRES 5HI6 MSE B 17 MET MODIFIED RESIDUE MODRES 5HI6 MSE B 21 MET MODIFIED RESIDUE MODRES 5HI6 MSE B 43 MET MODIFIED RESIDUE MODRES 5HI6 MSE B 93 MET MODIFIED RESIDUE MODRES 5HI6 MSE B 95 MET MODIFIED RESIDUE MODRES 5HI6 MSE B 111 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 17 8 HET MSE A 21 8 HET MSE A 43 8 HET MSE A 93 8 HET MSE A 95 8 HET MSE A 111 8 HET MSE B 1 8 HET MSE B 17 8 HET MSE B 21 8 HET MSE B 43 8 HET MSE B 93 8 HET MSE B 95 8 HET MSE B 111 8 HET MTX A 201 33 HET CA A 202 1 HET K A 203 1 HET MTX B 201 33 HET K B 202 1 HET CL B 203 1 HET CL B 204 1 HETNAM MSE SELENOMETHIONINE HETNAM MTX METHOTREXATE HETNAM CA CALCIUM ION HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 MTX 2(C20 H22 N8 O5) FORMUL 4 CA CA 2+ FORMUL 5 K 2(K 1+) FORMUL 8 CL 2(CL 1-) FORMUL 10 HOH *281(H2 O) HELIX 1 AA1 ALA A 10 ASP A 12 5 3 HELIX 2 AA2 LEU A 25 LEU A 37 1 13 HELIX 3 AA3 ARG A 45 GLY A 52 1 8 HELIX 4 AA4 SER A 78 GLY A 87 1 10 HELIX 5 AA5 GLY A 97 LEU A 105 1 9 HELIX 6 AA6 ALA B 10 ASP B 12 5 3 HELIX 7 AA7 LEU B 25 LEU B 37 1 13 HELIX 8 AA8 ARG B 45 GLY B 52 1 8 HELIX 9 AA9 SER B 78 ALA B 86 1 9 HELIX 10 AB1 GLY B 97 ASP B 106 1 10 HELIX 11 AB2 GLU B 130 ASP B 132 5 3 SHEET 1 AA1 8 THR A 74 ALA A 76 0 SHEET 2 AA1 8 LEU A 59 ILE A 63 1 N ASN A 60 O THR A 74 SHEET 3 AA1 8 PRO A 40 GLY A 44 1 N VAL A 41 O LEU A 59 SHEET 4 AA1 8 GLU A 91 VAL A 94 1 O MSE A 93 N ILE A 42 SHEET 5 AA1 8 ILE A 2 LEU A 9 1 N SER A 4 O VAL A 94 SHEET 6 AA1 8 ARG A 110 ILE A 116 1 O TYR A 112 N LEU A 5 SHEET 7 AA1 8 TYR A 152 ARG A 159 -1 O CYS A 153 N HIS A 115 SHEET 8 AA1 8 TRP A 134 HIS A 142 -1 N GLU A 140 O PHE A 154 SHEET 1 AA2 2 VAL A 14 GLY A 16 0 SHEET 2 AA2 2 THR A 124 HIS A 125 -1 O THR A 124 N ILE A 15 SHEET 1 AA3 8 THR B 74 ALA B 76 0 SHEET 2 AA3 8 LEU B 59 ILE B 63 1 N ASN B 60 O THR B 74 SHEET 3 AA3 8 PRO B 40 GLY B 44 1 N VAL B 41 O LEU B 59 SHEET 4 AA3 8 GLU B 91 VAL B 94 1 O MSE B 93 N ILE B 42 SHEET 5 AA3 8 ILE B 2 LEU B 9 1 N SER B 4 O VAL B 94 SHEET 6 AA3 8 ARG B 110 ILE B 116 1 O TYR B 112 N LEU B 5 SHEET 7 AA3 8 TYR B 152 ARG B 159 -1 O GLU B 155 N LEU B 113 SHEET 8 AA3 8 TRP B 134 HIS B 142 -1 N HIS B 142 O TYR B 152 SHEET 1 AA4 2 VAL B 14 GLY B 16 0 SHEET 2 AA4 2 THR B 124 HIS B 125 -1 O THR B 124 N ILE B 15 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C GLY A 16 N MSE A 17 1555 1555 1.33 LINK C MSE A 17 N GLU A 18 1555 1555 1.33 LINK C ALA A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N PRO A 22 1555 1555 1.31 LINK C ILE A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N GLY A 44 1555 1555 1.34 LINK C VAL A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N VAL A 94 1555 1555 1.33 LINK C VAL A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N GLY A 96 1555 1555 1.33 LINK C ARG A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N TYR A 112 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C GLY B 16 N MSE B 17 1555 1555 1.33 LINK C MSE B 17 N GLU B 18 1555 1555 1.34 LINK C ALA B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N PRO B 22 1555 1555 1.39 LINK C ILE B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N GLY B 44 1555 1555 1.33 LINK C VAL B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N VAL B 94 1555 1555 1.33 LINK C VAL B 94 N MSE B 95 1555 1555 1.33 LINK C MSE B 95 N GLY B 96 1555 1555 1.33 LINK C ARG B 110 N MSE B 111 1555 1555 1.33 LINK C MSE B 111 N TYR B 112 1555 1555 1.33 LINK O MSE A 17 CA CA A 202 1555 1555 2.30 LINK O GLU A 71 K K A 203 1555 1555 2.65 LINK CA CA A 202 O HOH A 318 1555 1555 2.78 LINK CA CA A 202 O HOH A 353 1555 1555 2.81 LINK CA CA A 202 O HOH A 371 1555 1555 2.95 LINK CA CA A 202 O HOH A 426 1555 1555 2.30 LINK CA CA A 202 O HOH A 429 1555 1555 2.36 LINK K K A 203 OD1 ASP B 12 1555 1555 2.75 LINK K K A 203 OD2 ASP B 12 1555 1555 2.77 LINK K K A 203 OE2 GLU B 119 1555 1555 3.45 LINK O ALA B 8 K K B 202 1555 1555 2.75 LINK O ILE B 15 K K B 202 1555 1555 2.84 LINK K K B 202 O HOH B 353 1555 1555 3.08 LINK K K B 202 O HOH B 424 1555 1555 2.70 CISPEP 1 GLY A 96 GLY A 97 0 3.28 CISPEP 2 GLY B 96 GLY B 97 0 5.84 SITE 1 AC1 15 ILE A 6 ALA A 7 ASP A 28 PHE A 32 SITE 2 AC1 15 LYS A 33 ARG A 53 LEU A 55 ARG A 58 SITE 3 AC1 15 MSE A 95 TYR A 101 THR A 114 HOH A 308 SITE 4 AC1 15 HOH A 321 HOH A 335 HOH A 362 SITE 1 AC2 7 MSE A 17 GLU A 18 HOH A 318 HOH A 353 SITE 2 AC2 7 HOH A 371 HOH A 426 HOH A 429 SITE 1 AC3 3 GLU A 71 ASP B 12 GLU B 119 SITE 1 AC4 17 ILE B 6 ALA B 7 ALA B 8 ASP B 28 SITE 2 AC4 17 LEU B 29 PHE B 32 LYS B 33 SER B 50 SITE 3 AC4 17 ARG B 53 ARG B 58 MSE B 95 TYR B 101 SITE 4 AC4 17 THR B 114 HOH B 303 HOH B 336 HOH B 351 SITE 5 AC4 17 HOH B 362 SITE 1 AC5 4 ALA B 8 ILE B 15 HOH B 353 HOH B 424 SITE 1 AC6 3 GLU B 130 GLU B 133 TRP B 134 SITE 1 AC7 3 GLY B 44 THR B 47 GLY B 97 CRYST1 44.151 60.623 109.942 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022650 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009096 0.00000