HEADER HYDROLASE 11-JAN-16 5HIF TITLE CRYSTAL STRUCTURE OF A RECONSTRUCTED LACTONASE ANCESTOR, ANC1-MPH, OF TITLE 2 THE BACTERIAL METHYL PARATHION HYDROLASE, MPH. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECONSTRUCTED LACTONASE ANCESTOR, ANC1-MPH; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.35; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (D3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS ANCESTRAL RECONSTRUCTION, LACTONASE, METHYL PARATHION HYDROLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.BAIER,P.D.CARR,C.J.JACKSON REVDAT 2 27-SEP-23 5HIF 1 LINK REVDAT 1 08-FEB-17 5HIF 0 JRNL AUTH F.BAIER,P.D.CARR,C.J.JACKSON JRNL TITL TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 74621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3965 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 266 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.544 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4648 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4460 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6323 ; 1.959 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10311 ; 1.302 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 624 ; 6.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;37.468 ;25.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 733 ;12.967 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.909 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 705 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5368 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1019 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2421 ; 1.754 ; 1.610 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2420 ; 1.755 ; 1.609 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3031 ; 2.440 ; 2.412 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3032 ; 2.440 ; 2.413 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2227 ; 2.688 ; 1.877 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2227 ; 2.687 ; 1.877 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3280 ; 3.965 ; 2.676 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5506 ; 5.255 ;13.854 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5254 ; 5.190 ;13.421 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -4 294 B -4 294 17029 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : XENOCS GENIX 3D CU HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MICRO SOURCE REMARK 200 OPTICS : MARMUX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 33.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P9E.ENT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM ACETATE TERAHYDRATE REMARK 280 20% PEG 3350 10MM TRIS/HCL 50MM NACL 0.1MM ZNCL2, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -174.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 278 O HOH B 501 1.87 REMARK 500 O HOH A 540 O HOH A 676 1.91 REMARK 500 O HOH A 627 O HOH B 692 1.99 REMARK 500 NZ LYS B 251 O HOH B 502 2.11 REMARK 500 O HOH B 620 O HOH B 692 2.13 REMARK 500 OD1 ASP B 256 O HOH B 503 2.15 REMARK 500 O HOH B 725 O HOH B 728 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 111 CE1 TYR A 111 CZ -0.079 REMARK 500 TYR B 111 CE1 TYR B 111 CZ -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 153 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 187 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASN B 126 CB - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 8 -29.69 73.46 REMARK 500 ASP A 79 163.47 63.53 REMARK 500 ALA A 83 -125.23 43.93 REMARK 500 LEU A 90 -167.87 -112.38 REMARK 500 MET A 115 34.66 -90.32 REMARK 500 SER A 197 55.48 -146.58 REMARK 500 LYS B 8 -31.36 72.98 REMARK 500 ASP B 79 165.69 71.70 REMARK 500 ALA B 83 -124.80 44.67 REMARK 500 PHE B 86 45.35 -141.26 REMARK 500 LEU B 90 -167.35 -111.65 REMARK 500 MET B 115 37.12 -91.27 REMARK 500 GLU B 127 -4.12 59.85 REMARK 500 SER B 197 52.46 -142.84 REMARK 500 ASP B 280 86.88 -150.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 747 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 733 DISTANCE = 6.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 91.7 REMARK 620 3 HIS A 200 NE2 90.3 90.4 REMARK 620 4 ASP A 221 OD2 85.1 173.5 95.3 REMARK 620 5 HOH A 507 O 106.8 99.8 159.7 75.8 REMARK 620 6 HOH A 646 O 170.9 93.9 82.6 89.9 79.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 HIS A 119 NE2 88.2 REMARK 620 3 ASP A 221 OD2 167.0 97.8 REMARK 620 4 HIS A 268 NE2 89.4 116.5 98.1 REMARK 620 5 HOH A 507 O 92.6 104.0 74.8 139.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HIS B 116 ND1 90.3 REMARK 620 3 HIS B 200 NE2 90.8 89.1 REMARK 620 4 ASP B 221 OD2 87.2 173.3 97.2 REMARK 620 5 HOH B 508 O 105.2 98.8 162.0 75.9 REMARK 620 6 HOH B 585 O 171.3 97.2 85.1 85.8 77.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD2 REMARK 620 2 HIS B 119 NE2 87.8 REMARK 620 3 ASP B 221 OD2 165.3 99.0 REMARK 620 4 HIS B 268 NE2 89.0 117.0 99.2 REMARK 620 5 HOH B 508 O 91.3 101.9 74.6 141.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 404 DBREF 5HIF A -4 294 PDB 5HIF 5HIF -4 294 DBREF 5HIF B -4 294 PDB 5HIF 5HIF -4 294 SEQRES 1 A 299 GLY THR ILE GLY SER MET ALA ALA ALA PRO GLN VAL LYS SEQRES 2 A 299 THR GLN ALA PRO GLY PHE TYR ARG MET MET LEU GLY ASP SEQRES 3 A 299 PHE GLU VAL THR ALA LEU SER ASP GLY THR VAL ASP LEU SEQRES 4 A 299 PRO VAL ASP LYS LEU LEU ASN GLN PRO PRO ALA LYS THR SEQRES 5 A 299 GLN SER ALA LEU ALA LYS SER PHE LEU LYS ALA PRO LEU SEQRES 6 A 299 GLU THR SER VAL ASN ALA TYR LEU VAL ASN THR GLY SER SEQRES 7 A 299 LYS LEU VAL LEU VAL ASP THR GLY ALA ALA GLY LEU PHE SEQRES 8 A 299 GLY PRO THR LEU GLY LYS LEU ALA ALA ASN LEU LYS ALA SEQRES 9 A 299 ALA GLY TYR GLN PRO GLU GLN VAL ASP GLU ILE TYR ILE SEQRES 10 A 299 THR HIS MET HIS PRO ASP HIS VAL GLY GLY LEU MET ALA SEQRES 11 A 299 ASN GLU GLN ALA ALA PHE PRO ASN ALA VAL VAL ARG ALA SEQRES 12 A 299 ASP GLN LYS ASP ALA ASP PHE TRP LEU SER GLN ALA ASN SEQRES 13 A 299 LEU ASP LYS ALA PRO ASP ASP GLU LYS GLY PHE PHE GLN SEQRES 14 A 299 GLY ALA MET ALA SER LEU ASN PRO TYR VAL LYS ALA GLY SEQRES 15 A 299 LYS PHE LYS PRO PHE SER GLY ASN THR ASP LEU VAL PRO SEQRES 16 A 299 GLY ILE LYS ALA LEU ALA SER HIS GLY HIS THR PRO GLY SEQRES 17 A 299 HIS THR THR TYR VAL VAL GLU SER LYS GLY GLN LYS LEU SEQRES 18 A 299 VAL LEU LEU GLY ASP LEU ILE HIS VAL ALA ALA VAL GLN SEQRES 19 A 299 PHE ASP ASP PRO SER VAL THR ILE GLN PHE ASP SER ASP SEQRES 20 A 299 SER LYS ALA ALA ALA ALA GLU ARG LYS LYS ALA PHE ALA SEQRES 21 A 299 ASP ALA ALA LYS GLY GLY TYR LEU ILE GLY ALA ALA HIS SEQRES 22 A 299 LEU SER PHE PRO GLY ILE GLY HIS ILE ARG ALA ASP GLY SEQRES 23 A 299 LYS GLY TYR ARG PHE VAL PRO VAL ASN TYR SER VAL ALA SEQRES 1 B 299 GLY THR ILE GLY SER MET ALA ALA ALA PRO GLN VAL LYS SEQRES 2 B 299 THR GLN ALA PRO GLY PHE TYR ARG MET MET LEU GLY ASP SEQRES 3 B 299 PHE GLU VAL THR ALA LEU SER ASP GLY THR VAL ASP LEU SEQRES 4 B 299 PRO VAL ASP LYS LEU LEU ASN GLN PRO PRO ALA LYS THR SEQRES 5 B 299 GLN SER ALA LEU ALA LYS SER PHE LEU LYS ALA PRO LEU SEQRES 6 B 299 GLU THR SER VAL ASN ALA TYR LEU VAL ASN THR GLY SER SEQRES 7 B 299 LYS LEU VAL LEU VAL ASP THR GLY ALA ALA GLY LEU PHE SEQRES 8 B 299 GLY PRO THR LEU GLY LYS LEU ALA ALA ASN LEU LYS ALA SEQRES 9 B 299 ALA GLY TYR GLN PRO GLU GLN VAL ASP GLU ILE TYR ILE SEQRES 10 B 299 THR HIS MET HIS PRO ASP HIS VAL GLY GLY LEU MET ALA SEQRES 11 B 299 ASN GLU GLN ALA ALA PHE PRO ASN ALA VAL VAL ARG ALA SEQRES 12 B 299 ASP GLN LYS ASP ALA ASP PHE TRP LEU SER GLN ALA ASN SEQRES 13 B 299 LEU ASP LYS ALA PRO ASP ASP GLU LYS GLY PHE PHE GLN SEQRES 14 B 299 GLY ALA MET ALA SER LEU ASN PRO TYR VAL LYS ALA GLY SEQRES 15 B 299 LYS PHE LYS PRO PHE SER GLY ASN THR ASP LEU VAL PRO SEQRES 16 B 299 GLY ILE LYS ALA LEU ALA SER HIS GLY HIS THR PRO GLY SEQRES 17 B 299 HIS THR THR TYR VAL VAL GLU SER LYS GLY GLN LYS LEU SEQRES 18 B 299 VAL LEU LEU GLY ASP LEU ILE HIS VAL ALA ALA VAL GLN SEQRES 19 B 299 PHE ASP ASP PRO SER VAL THR ILE GLN PHE ASP SER ASP SEQRES 20 B 299 SER LYS ALA ALA ALA ALA GLU ARG LYS LYS ALA PHE ALA SEQRES 21 B 299 ASP ALA ALA LYS GLY GLY TYR LEU ILE GLY ALA ALA HIS SEQRES 22 B 299 LEU SER PHE PRO GLY ILE GLY HIS ILE ARG ALA ASP GLY SEQRES 23 B 299 LYS GLY TYR ARG PHE VAL PRO VAL ASN TYR SER VAL ALA HET ZN A 401 1 HET ZN A 402 1 HET PEG A 403 7 HET ZN B 401 1 HET ZN B 402 1 HET PEG B 403 7 HET MG B 404 1 HETNAM ZN ZINC ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 9 MG MG 2+ FORMUL 10 HOH *480(H2 O) HELIX 1 AA1 PRO A 35 LEU A 40 1 6 HELIX 2 AA2 PRO A 43 SER A 54 1 12 HELIX 3 AA3 LYS A 92 ALA A 100 1 9 HELIX 4 AA4 GLN A 103 VAL A 107 5 5 HELIX 5 AA5 HIS A 116 GLY A 121 1 6 HELIX 6 AA6 ASP A 139 LEU A 147 1 9 HELIX 7 AA7 SER A 148 ALA A 155 1 8 HELIX 8 AA8 PRO A 156 ALA A 176 1 21 HELIX 9 AA9 VAL A 225 PHE A 230 1 6 HELIX 10 AB1 ASP A 242 GLY A 261 1 20 HELIX 11 AB2 PRO B 35 LEU B 40 1 6 HELIX 12 AB3 PRO B 43 SER B 54 1 12 HELIX 13 AB4 LYS B 92 ALA B 100 1 9 HELIX 14 AB5 GLN B 103 VAL B 107 5 5 HELIX 15 AB6 HIS B 116 GLY B 121 1 6 HELIX 16 AB7 ASP B 139 LEU B 147 1 9 HELIX 17 AB8 SER B 148 ALA B 155 1 8 HELIX 18 AB9 PRO B 156 ALA B 176 1 21 HELIX 19 AC1 VAL B 225 PHE B 230 1 6 HELIX 20 AC2 ASP B 242 GLY B 261 1 20 SHEET 1 AA1 6 PHE A 14 LEU A 19 0 SHEET 2 AA1 6 PHE A 22 LEU A 34 -1 O VAL A 24 N MET A 17 SHEET 3 AA1 6 LEU A 60 ASN A 70 -1 O VAL A 64 N ASP A 29 SHEET 4 AA1 6 LEU A 75 VAL A 78 -1 O VAL A 76 N VAL A 69 SHEET 5 AA1 6 GLU A 109 TYR A 111 1 O TYR A 111 N LEU A 77 SHEET 6 AA1 6 VAL A 135 ARG A 137 1 O ARG A 137 N ILE A 110 SHEET 1 AA2 2 MET A 124 ALA A 125 0 SHEET 2 AA2 2 GLN A 128 ALA A 129 -1 O GLN A 128 N ALA A 125 SHEET 1 AA3 7 THR A 186 VAL A 189 0 SHEET 2 AA3 7 ILE A 192 ALA A 196 -1 O ALA A 194 N THR A 186 SHEET 3 AA3 7 THR A 205 SER A 211 -1 O THR A 206 N LEU A 195 SHEET 4 AA3 7 GLN A 214 LEU A 218 -1 O LEU A 218 N TYR A 207 SHEET 5 AA3 7 LEU A 263 GLY A 265 1 O LEU A 263 N VAL A 217 SHEET 6 AA3 7 ILE A 274 ASP A 280 -1 O GLY A 275 N ILE A 264 SHEET 7 AA3 7 GLY A 283 PRO A 288 -1 O VAL A 287 N HIS A 276 SHEET 1 AA4 6 PHE B 14 LEU B 19 0 SHEET 2 AA4 6 PHE B 22 LEU B 34 -1 O VAL B 24 N MET B 17 SHEET 3 AA4 6 LEU B 60 ASN B 70 -1 O VAL B 64 N ASP B 29 SHEET 4 AA4 6 LEU B 75 VAL B 78 -1 O VAL B 76 N VAL B 69 SHEET 5 AA4 6 GLU B 109 TYR B 111 1 O TYR B 111 N LEU B 77 SHEET 6 AA4 6 VAL B 135 ARG B 137 1 O ARG B 137 N ILE B 110 SHEET 1 AA5 2 MET B 124 ALA B 125 0 SHEET 2 AA5 2 GLN B 128 ALA B 129 -1 O GLN B 128 N ALA B 125 SHEET 1 AA6 7 THR B 186 VAL B 189 0 SHEET 2 AA6 7 ILE B 192 ALA B 196 -1 O ALA B 194 N THR B 186 SHEET 3 AA6 7 THR B 205 SER B 211 -1 O THR B 206 N LEU B 195 SHEET 4 AA6 7 GLN B 214 LEU B 218 -1 O LEU B 218 N TYR B 207 SHEET 5 AA6 7 LEU B 263 GLY B 265 1 O LEU B 263 N VAL B 217 SHEET 6 AA6 7 ILE B 274 ASP B 280 -1 O GLY B 275 N ILE B 264 SHEET 7 AA6 7 GLY B 283 PRO B 288 -1 O VAL B 287 N HIS B 276 LINK NE2 HIS A 114 ZN ZN A 402 1555 1555 2.18 LINK ND1 HIS A 116 ZN ZN A 402 1555 1555 2.18 LINK OD2 ASP A 118 ZN ZN A 401 1555 1555 2.15 LINK NE2 HIS A 119 ZN ZN A 401 1555 1555 2.08 LINK NE2 HIS A 200 ZN ZN A 402 1555 1555 2.22 LINK OD2 ASP A 221 ZN ZN A 401 1555 1555 2.18 LINK OD2 ASP A 221 ZN ZN A 402 1555 1555 2.17 LINK NE2 HIS A 268 ZN ZN A 401 1555 1555 2.07 LINK ZN ZN A 401 O HOH A 507 1555 1555 1.98 LINK ZN ZN A 402 O HOH A 507 1555 1555 1.94 LINK ZN ZN A 402 O HOH A 646 1555 1555 2.30 LINK NE2 HIS B 114 ZN ZN B 402 1555 1555 2.20 LINK ND1 HIS B 116 ZN ZN B 402 1555 1555 2.21 LINK OD2 ASP B 118 ZN ZN B 401 1555 1555 2.13 LINK NE2 HIS B 119 ZN ZN B 401 1555 1555 2.08 LINK NE2 HIS B 200 ZN ZN B 402 1555 1555 2.19 LINK OD2 ASP B 221 ZN ZN B 401 1555 1555 2.16 LINK OD2 ASP B 221 ZN ZN B 402 1555 1555 2.14 LINK NE2 HIS B 268 ZN ZN B 401 1555 1555 2.05 LINK OD2 ASP B 280 MG MG B 404 1555 1555 2.21 LINK ZN ZN B 401 O HOH B 508 1555 1555 1.99 LINK ZN ZN B 402 O HOH B 508 1555 1555 1.95 LINK ZN ZN B 402 O HOH B 585 1555 1555 2.31 CISPEP 1 ALA A 58 PRO A 59 0 1.54 CISPEP 2 PHE A 271 PRO A 272 0 17.18 CISPEP 3 ALA B 58 PRO B 59 0 1.02 CISPEP 4 PHE B 271 PRO B 272 0 14.10 SITE 1 AC1 6 ASP A 118 HIS A 119 ASP A 221 HIS A 268 SITE 2 AC1 6 ZN A 402 HOH A 507 SITE 1 AC2 7 HIS A 114 HIS A 116 HIS A 200 ASP A 221 SITE 2 AC2 7 ZN A 401 HOH A 507 HOH A 646 SITE 1 AC3 5 VAL A 32 PRO A 117 ASP A 118 PHE A 162 SITE 2 AC3 5 HIS A 268 SITE 1 AC4 6 ASP B 118 HIS B 119 ASP B 221 HIS B 268 SITE 2 AC4 6 ZN B 402 HOH B 508 SITE 1 AC5 7 HIS B 114 HIS B 116 HIS B 200 ASP B 221 SITE 2 AC5 7 ZN B 401 HOH B 508 HOH B 585 SITE 1 AC6 5 VAL B 32 PHE B 86 ASP B 118 PHE B 239 SITE 2 AC6 5 HIS B 268 SITE 1 AC7 3 ARG A 285 ASP B 280 ARG B 285 CRYST1 57.600 88.150 119.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008347 0.00000