HEADER TRANSFERASE 12-JAN-16 5HIK TITLE CRYSTAL STRUCTURE OF GLYCINE SARCOSINE N-METHYLTRANSFERASE FROM TITLE 2 METHANOHALOPHILUS PORTUCALENSIS IN COMPLEX WITH S-ADENOSYLMETHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE SARCOSINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.156; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOHALOPHILUS PORTUCALENSIS FDF-1; SOURCE 3 ORGANISM_TAXID: 523843; SOURCE 4 STRAIN: FDF-1; SOURCE 5 GENE: GSMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASES (SAM OR ADOMET- KEYWDS 2 MTASE), CLASS I, MONOMETHYLATION OF GLYCINE AND SARCOSINE, RATE- KEYWDS 3 LIMITING ENZYME IN BETAINE BIOSYNTHESIS, BETAINE-MEDIATED FEEDBACK KEYWDS 4 INHIBITION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.R.LEE,T.S.LIN,S.J.LAI,M.S.LIU,M.C.LAI,N.L.CHAN REVDAT 3 08-NOV-23 5HIK 1 REMARK REVDAT 2 18-JAN-17 5HIK 1 JRNL REVDAT 1 23-NOV-16 5HIK 0 JRNL AUTH Y.R.LEE,T.S.LIN,S.J.LAI,M.S.LIU,M.C.LAI,N.L.CHAN JRNL TITL STRUCTURAL ANALYSIS OF GLYCINE SARCOSINE N-METHYLTRANSFERASE JRNL TITL 2 FROM METHANOHALOPHILUS PORTUCALENSIS REVEALS MECHANISTIC JRNL TITL 3 INSIGHTS INTO THE REGULATION OF METHYLTRANSFERASE ACTIVITY JRNL REF SCI REP V. 6 38071 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27934872 JRNL DOI 10.1038/SREP38071 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 17543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4878 - 4.2729 1.00 2908 161 0.1517 0.1897 REMARK 3 2 4.2729 - 3.3935 1.00 2800 147 0.1468 0.1994 REMARK 3 3 3.3935 - 2.9651 1.00 2793 145 0.1796 0.2144 REMARK 3 4 2.9651 - 2.6943 1.00 2756 141 0.1993 0.2587 REMARK 3 5 2.6943 - 2.5013 1.00 2734 150 0.1931 0.2783 REMARK 3 6 2.5013 - 2.3539 0.98 2675 133 0.1919 0.2600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2050 REMARK 3 ANGLE : 1.035 2766 REMARK 3 CHIRALITY : 0.043 289 REMARK 3 PLANARITY : 0.004 358 REMARK 3 DIHEDRAL : 13.675 739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6723 -17.7949 -32.5538 REMARK 3 T TENSOR REMARK 3 T11: 0.4041 T22: 0.3694 REMARK 3 T33: 0.4245 T12: 0.0285 REMARK 3 T13: -0.0192 T23: -0.0865 REMARK 3 L TENSOR REMARK 3 L11: 3.4014 L22: 3.1588 REMARK 3 L33: 6.1897 L12: -2.9423 REMARK 3 L13: 3.2829 L23: -1.4799 REMARK 3 S TENSOR REMARK 3 S11: -0.3410 S12: -0.3003 S13: 0.2310 REMARK 3 S21: 0.3017 S22: 0.4332 S23: -0.5648 REMARK 3 S31: -0.7367 S32: 0.0820 S33: -0.1060 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3738 -14.5247 -22.3808 REMARK 3 T TENSOR REMARK 3 T11: 0.2763 T22: 0.4958 REMARK 3 T33: 0.6037 T12: 0.0265 REMARK 3 T13: -0.0222 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 7.5265 L22: 5.0747 REMARK 3 L33: 4.9370 L12: -1.7575 REMARK 3 L13: -5.8344 L23: 1.6438 REMARK 3 S TENSOR REMARK 3 S11: -0.1832 S12: 0.6742 S13: -0.5913 REMARK 3 S21: -0.2608 S22: -0.1477 S23: 0.9064 REMARK 3 S31: 0.1811 S32: -1.5760 S33: 0.3423 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8715 -8.3991 -18.2351 REMARK 3 T TENSOR REMARK 3 T11: 0.2788 T22: 0.2048 REMARK 3 T33: 0.2935 T12: 0.0421 REMARK 3 T13: -0.0242 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 5.2035 L22: 2.8259 REMARK 3 L33: 6.2921 L12: 0.8263 REMARK 3 L13: -1.7691 L23: -1.3195 REMARK 3 S TENSOR REMARK 3 S11: -0.1534 S12: -0.1197 S13: 0.0398 REMARK 3 S21: 0.0652 S22: 0.1750 S23: 0.3557 REMARK 3 S31: -0.3100 S32: -0.3214 S33: -0.0092 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1380 -5.2765 -28.1548 REMARK 3 T TENSOR REMARK 3 T11: 0.3826 T22: 0.2342 REMARK 3 T33: 0.3314 T12: -0.0788 REMARK 3 T13: -0.0130 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 5.5316 L22: 2.0099 REMARK 3 L33: 9.5815 L12: -6.8948 REMARK 3 L13: 4.9115 L23: -3.3940 REMARK 3 S TENSOR REMARK 3 S11: 0.4595 S12: 0.8290 S13: 0.0679 REMARK 3 S21: -1.1213 S22: -0.3189 S23: -0.0505 REMARK 3 S31: 0.1555 S32: 0.1297 S33: -0.1092 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5726 -7.4667 -16.1455 REMARK 3 T TENSOR REMARK 3 T11: 0.3311 T22: 0.3079 REMARK 3 T33: 0.3216 T12: -0.0248 REMARK 3 T13: -0.0161 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 9.0071 L22: 9.1476 REMARK 3 L33: 5.8897 L12: -7.5646 REMARK 3 L13: 6.8071 L23: -7.1872 REMARK 3 S TENSOR REMARK 3 S11: -0.6199 S12: 0.1641 S13: 0.0702 REMARK 3 S21: 1.0054 S22: 0.3410 S23: -0.1487 REMARK 3 S31: -1.0117 S32: 0.1199 S33: 0.3389 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7889 -17.5414 -10.1125 REMARK 3 T TENSOR REMARK 3 T11: 0.2893 T22: 0.3011 REMARK 3 T33: 0.1845 T12: 0.0458 REMARK 3 T13: 0.0257 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 4.6562 L22: 7.5497 REMARK 3 L33: 5.4946 L12: -0.8451 REMARK 3 L13: 0.8411 L23: 2.4033 REMARK 3 S TENSOR REMARK 3 S11: -0.2360 S12: -0.2119 S13: -0.0381 REMARK 3 S21: 0.7647 S22: 0.3176 S23: 0.0223 REMARK 3 S31: -0.0091 S32: 0.3244 S33: -0.0709 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3361 -31.6300 -28.2896 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.2865 REMARK 3 T33: 0.3307 T12: 0.0160 REMARK 3 T13: 0.0087 T23: -0.0542 REMARK 3 L TENSOR REMARK 3 L11: 1.6029 L22: 3.5248 REMARK 3 L33: 8.6713 L12: 0.3921 REMARK 3 L13: -0.4578 L23: -0.6868 REMARK 3 S TENSOR REMARK 3 S11: -0.1516 S12: 0.0807 S13: -0.2359 REMARK 3 S21: -0.0858 S22: 0.1313 S23: 0.0681 REMARK 3 S31: 0.4033 S32: -0.0913 S33: -0.0080 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7350 -27.0962 -6.8306 REMARK 3 T TENSOR REMARK 3 T11: 0.6401 T22: 0.3234 REMARK 3 T33: 0.3026 T12: 0.0760 REMARK 3 T13: 0.1314 T23: 0.1216 REMARK 3 L TENSOR REMARK 3 L11: 7.6254 L22: 3.7942 REMARK 3 L33: 5.6682 L12: 1.0397 REMARK 3 L13: 3.6273 L23: 2.8472 REMARK 3 S TENSOR REMARK 3 S11: -0.1618 S12: -0.7326 S13: -0.5154 REMARK 3 S21: 1.1654 S22: 0.1795 S23: 0.6890 REMARK 3 S31: 0.2875 S32: -0.4664 S33: -0.0730 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3281 -27.6020 -19.0518 REMARK 3 T TENSOR REMARK 3 T11: 0.2727 T22: 0.3263 REMARK 3 T33: 0.4238 T12: -0.0212 REMARK 3 T13: 0.0883 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 3.1510 L22: 6.2046 REMARK 3 L33: 5.6451 L12: 2.5654 REMARK 3 L13: 3.7437 L23: 5.3733 REMARK 3 S TENSOR REMARK 3 S11: 0.1793 S12: -0.3719 S13: -0.4631 REMARK 3 S21: 0.6301 S22: -0.4190 S23: 0.6054 REMARK 3 S31: 0.4848 S32: -1.0649 S33: 0.2558 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17545 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 5HIL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: GSMT (6.6 MG/ML) IN REMARK 280 100 MM TES PH 7.3, 2 M KCL, 1 MM EDTA, 1 MM 2-MERCAPTOETHANOL, REMARK 280 0.1 MM SAH AND 0.2 M BETAINE. CRYSTALLIZATION REAGENT: 0.1 M REMARK 280 TRIS-HCL PH 8.5 AND 1.5 M SODIUM CHLORIDE. SAM WAS SOAKED INTO REMARK 280 CRYSTALS BEFORE DATA COLLECTION., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.95300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.48500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.89450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.95300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.48500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.89450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.95300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.48500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.89450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.95300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.48500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.89450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 423 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 425 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 430 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 TYR A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 ASP A 8 REMARK 465 PHE A 9 REMARK 465 GLY A 10 REMARK 465 ASP A 11 REMARK 465 ASN A 12 REMARK 465 PRO A 13 REMARK 465 ILE A 14 REMARK 465 GLU A 15 REMARK 465 VAL A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 SER A 19 REMARK 465 ASP A 20 REMARK 465 GLY A 176 REMARK 465 TYR A 177 REMARK 465 SER A 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 GLN A 236 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 117 53.27 -149.06 REMARK 500 ASN A 134 65.70 60.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HII RELATED DB: PDB REMARK 900 RELATED ID: 5HIJ RELATED DB: PDB REMARK 900 RELATED ID: 5HIL RELATED DB: PDB REMARK 900 RELATED ID: 5HIM RELATED DB: PDB REMARK 900 RELATED ID: 5GWX RELATED DB: PDB REMARK 900 RELATED ID: 5H02 RELATED DB: PDB DBREF 5HIK A 1 263 UNP F6KV61 F6KV61_9EURY 1 263 SEQADV 5HIK MET A -20 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK GLY A -19 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK SER A -18 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK SER A -17 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK HIS A -16 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK HIS A -15 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK HIS A -14 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK HIS A -13 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK HIS A -12 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK HIS A -11 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK SER A -10 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK SER A -9 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK GLY A -8 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK LEU A -7 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK VAL A -6 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK PRO A -5 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK ARG A -4 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK GLY A -3 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK SER A -2 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK HIS A -1 UNP F6KV61 EXPRESSION TAG SEQADV 5HIK MET A 0 UNP F6KV61 EXPRESSION TAG SEQRES 1 A 284 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 284 LEU VAL PRO ARG GLY SER HIS MET MET ASN GLN TYR GLY SEQRES 3 A 284 LYS GLN ASP PHE GLY ASP ASN PRO ILE GLU VAL ARG GLU SEQRES 4 A 284 SER ASP HIS TYR GLU GLU GLU TYR VAL LEU GLY PHE VAL SEQRES 5 A 284 ASP LYS TRP ASP GLU LEU ILE ASP TRP GLU SER ARG ALA SEQRES 6 A 284 GLU SER GLU GLY ASP THR ILE ILE ASN ILE LEU LYS GLU SEQRES 7 A 284 ARG GLY VAL LYS LYS VAL LEU ASP VAL ALA THR GLY THR SEQRES 8 A 284 GLY PHE ASN SER VAL ARG LEU LEU GLN ALA GLY PHE ASP SEQRES 9 A 284 VAL VAL SER ALA ASP GLY SER ALA GLU MET LEU VAL LYS SEQRES 10 A 284 ALA PHE ASP ASN ALA ARG ASP HIS GLY TYR LEU MET ARG SEQRES 11 A 284 THR VAL GLN ALA ASP TRP ARG TRP MET ASN LYS ASP ILE SEQRES 12 A 284 HIS ASP LYS PHE ASP ALA ILE VAL CYS LEU GLY ASN SER SEQRES 13 A 284 PHE THR HIS LEU PHE ASP GLU GLY ASP ARG ARG LYS ALA SEQRES 14 A 284 LEU ALA GLU PHE TYR ALA LEU LEU LYS HIS ASP GLY VAL SEQRES 15 A 284 LEU LEU LEU ASP GLN ARG ASN TYR ASP ALA ILE LEU ASP SEQRES 16 A 284 ASP GLY TYR SER SER LYS HIS ALA HIS TYR TYR CYS GLY SEQRES 17 A 284 ASP THR VAL SER VAL TYR PRO GLU HIS VAL ASP GLU GLY SEQRES 18 A 284 LEU ALA ARG PHE LYS TYR GLU PHE SER ASP GLY SER VAL SEQRES 19 A 284 TYR ASN LEU ASN MET PHE PRO LEU ARG LYS ASP TYR THR SEQRES 20 A 284 ARG GLN LEU LEU HIS GLU VAL GLY PHE GLN GLU ILE ASN SEQRES 21 A 284 THR LEU GLY ASP PHE LYS GLU THR TYR LYS GLU ASP GLU SEQRES 22 A 284 PRO ASP PHE PHE LEU HIS VAL ALA GLU LYS ASN HET SAM A 301 27 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *73(H2 O) HELIX 1 AA1 HIS A 21 ILE A 38 1 18 HELIX 2 AA2 ASP A 39 GLU A 47 1 9 HELIX 3 AA3 ASP A 49 ARG A 58 1 10 HELIX 4 AA4 GLY A 71 GLY A 81 1 11 HELIX 5 AA5 SER A 90 HIS A 104 1 15 HELIX 6 AA6 ASP A 114 ASP A 121 5 8 HELIX 7 AA7 SER A 135 LEU A 139 5 5 HELIX 8 AA8 ASP A 141 LEU A 155 1 15 HELIX 9 AA9 ASN A 168 ASP A 175 1 8 HELIX 10 AB1 ARG A 222 VAL A 233 1 12 SHEET 1 AA1 7 THR A 110 GLN A 112 0 SHEET 2 AA1 7 ASP A 83 ASP A 88 1 N SER A 86 O VAL A 111 SHEET 3 AA1 7 LYS A 62 ASP A 65 1 N VAL A 63 O ASP A 83 SHEET 4 AA1 7 PHE A 126 CYS A 131 1 O ALA A 128 N LEU A 64 SHEET 5 AA1 7 LEU A 156 ARG A 167 1 O LEU A 163 N ILE A 129 SHEET 6 AA1 7 PHE A 255 GLU A 261 -1 O HIS A 258 N LEU A 164 SHEET 7 AA1 7 GLU A 237 ASP A 243 -1 N LEU A 241 O LEU A 257 SHEET 1 AA2 4 HIS A 183 TYR A 185 0 SHEET 2 AA2 4 VAL A 190 ASP A 198 -1 O VAL A 192 N HIS A 183 SHEET 3 AA2 4 LEU A 201 PHE A 208 -1 O ARG A 203 N HIS A 196 SHEET 4 AA2 4 VAL A 213 MET A 218 -1 O TYR A 214 N TYR A 206 SITE 1 AC1 19 ARG A 43 ALA A 67 THR A 68 GLY A 69 SITE 2 AC1 19 ASN A 73 ASP A 88 GLY A 89 SER A 90 SITE 3 AC1 19 MET A 93 ALA A 113 ASP A 114 TRP A 115 SITE 4 AC1 19 ARG A 116 LEU A 132 GLY A 133 SER A 135 SITE 5 AC1 19 HOH A 408 HOH A 421 HOH A 458 SITE 1 AC2 5 ASP A 35 TRP A 40 ASN A 100 HIS A 104 SITE 2 AC2 5 HOH A 403 SITE 1 AC3 4 GLU A 47 ILE A 52 ASN A 73 LEU A 132 SITE 1 AC4 4 ALA A 44 ARG A 76 GLN A 79 HIS A 104 SITE 1 AC5 4 ARG A 167 ASN A 168 HIS A 183 ASP A 254 CRYST1 51.906 120.970 131.789 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019266 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007588 0.00000