HEADER METAL BINDING PROTEIN 12-JAN-16 5HIO TITLE CRYSTAL STRUCTURE OF PQS RESPONSE PROTEIN PQSE IN COMPLEX WITH 2- TITLE 2 AMINOBENZOYLACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PQSE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 GENE: PA1000; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET19M KEYWDS QUORUM SENSING, PQS, PQSE, INHIBITOR, PSEUDOMONAS, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.WITZGALL,W.BLANKENFELDT REVDAT 3 10-JAN-24 5HIO 1 LINK REVDAT 2 29-JUN-16 5HIO 1 JRNL REVDAT 1 27-APR-16 5HIO 0 JRNL AUTH M.ZENDER,F.WITZGALL,S.L.DREES,E.WEIDEL,C.K.MAURER,S.FETZNER, JRNL AUTH 2 W.BLANKENFELDT,M.EMPTING,R.W.HARTMANN JRNL TITL DISSECTING THE MULTIPLE ROLES OF PQSE IN PSEUDOMONAS JRNL TITL 2 AERUGINOSA VIRULENCE BY DISCOVERY OF SMALL TOOL COMPOUNDS. JRNL REF ACS CHEM.BIOL. V. 11 1755 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27082157 JRNL DOI 10.1021/ACSCHEMBIO.6B00156 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6756 - 3.9516 1.00 2909 140 0.1508 0.1747 REMARK 3 2 3.9516 - 3.1367 1.00 2738 157 0.1486 0.1824 REMARK 3 3 3.1367 - 2.7402 1.00 2721 146 0.1673 0.2212 REMARK 3 4 2.7402 - 2.4897 1.00 2721 128 0.1644 0.1985 REMARK 3 5 2.4897 - 2.3112 1.00 2675 140 0.1589 0.1881 REMARK 3 6 2.3112 - 2.1750 1.00 2676 133 0.1749 0.2106 REMARK 3 7 2.1750 - 2.0660 1.00 2668 152 0.1898 0.2312 REMARK 3 8 2.0660 - 1.9761 1.00 2650 134 0.2145 0.2440 REMARK 3 9 1.9761 - 1.9000 1.00 2667 121 0.2420 0.3014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2524 REMARK 3 ANGLE : 0.883 3428 REMARK 3 CHIRALITY : 0.049 371 REMARK 3 PLANARITY : 0.005 450 REMARK 3 DIHEDRAL : 12.416 1518 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 18 THROUGH 77 )) OR ( CHAIN REMARK 3 'A' AND RESID 999 ) OR ( CHAIN 'S' AND RESID 4 ) OR REMARK 3 ( CHAIN 'S' AND RESID 10 ) OR ( CHAIN 'S' AND RESID REMARK 3 12 ) OR ( CHAIN 'S' AND RESID 13 ) OR ( CHAIN 'S' REMARK 3 AND RESID 14 ) OR ( CHAIN 'S' AND RESID 19 ) OR ( REMARK 3 CHAIN 'S' AND RESID 23 ) OR ( CHAIN 'S' AND RESID 25 REMARK 3 ) OR ( CHAIN 'S' AND RESID 32 ) OR ( CHAIN 'S' AND REMARK 3 RESID 40 ) OR ( CHAIN 'S' AND RESID 48 ) OR ( CHAIN ' REMARK 3 S' AND RESID 57 ) OR ( CHAIN 'S' AND RESID 59 ) OR ( REMARK 3 CHAIN 'S' AND RESID 60 ) OR ( CHAIN 'S' AND RESID 61 REMARK 3 ) OR ( CHAIN 'S' AND RESID 65 ) OR ( CHAIN 'S' AND REMARK 3 RESID 69 ) OR ( CHAIN 'S' AND RESID 75 ) OR ( CHAIN ' REMARK 3 S' AND RESID 77 ) OR ( CHAIN 'S' AND RESID 79 ) OR ( REMARK 3 CHAIN 'S' AND RESID 84 ) OR ( CHAIN 'S' AND RESID 85 REMARK 3 ) OR ( CHAIN 'S' AND RESID 108 ) OR ( CHAIN 'S' AND REMARK 3 RESID 120 ) OR ( CHAIN 'S' AND RESID 121 ) OR ( REMARK 3 CHAIN 'S' AND RESID 124 ) OR ( CHAIN 'S' AND RESID REMARK 3 131 ) OR ( CHAIN 'S' AND RESID 137 ) OR ( CHAIN 'S' REMARK 3 AND RESID 142 ) OR ( CHAIN 'S' AND RESID 162 ) OR ( REMARK 3 CHAIN 'S' AND RESID 163 ) OR ( CHAIN 'S' AND RESID REMARK 3 169 ) OR ( CHAIN 'S' AND RESID 170 )) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9939 -9.0848 -14.9269 REMARK 3 T TENSOR REMARK 3 T11: 0.2518 T22: 0.2598 REMARK 3 T33: 0.2635 T12: 0.0350 REMARK 3 T13: 0.0408 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.9109 L22: 2.8808 REMARK 3 L33: 1.9277 L12: -0.8952 REMARK 3 L13: -0.1617 L23: -0.4188 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: -0.0890 S13: -0.1502 REMARK 3 S21: 0.2833 S22: 0.1173 S23: 0.4002 REMARK 3 S31: -0.0599 S32: -0.3180 S33: -0.0411 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 78 THROUGH 102 )) OR ( CHAIN REMARK 3 'S' AND RESID 50 ) OR ( CHAIN 'S' AND RESID 74 ) OR REMARK 3 ( CHAIN 'S' AND RESID 91 ) OR ( CHAIN 'S' AND RESID REMARK 3 113 ) OR ( CHAIN 'S' AND RESID 114 ) OR ( CHAIN 'S' REMARK 3 AND RESID 132 ) OR ( CHAIN 'S' AND RESID 148 ) OR ( REMARK 3 CHAIN 'S' AND RESID 171 ) OR ( CHAIN 'S' AND RESID REMARK 3 182 ) OR ( CHAIN 'S' AND RESID 183 )) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9210 -11.2095 -2.7310 REMARK 3 T TENSOR REMARK 3 T11: 0.4861 T22: 0.4807 REMARK 3 T33: 0.2302 T12: 0.0245 REMARK 3 T13: 0.0929 T23: 0.1101 REMARK 3 L TENSOR REMARK 3 L11: 1.8305 L22: 1.7530 REMARK 3 L33: 0.3346 L12: -0.4213 REMARK 3 L13: -0.3891 L23: 0.2227 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.7807 S13: -0.1897 REMARK 3 S21: 0.8006 S22: 0.0605 S23: 0.1777 REMARK 3 S31: 0.1124 S32: -0.2452 S33: 0.0490 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 103 THROUGH 116 )) OR ( REMARK 3 CHAIN 'S' AND RESID 160 ) OR ( CHAIN 'S' AND RESID REMARK 3 172 ) OR ( CHAIN 'S' AND RESID 184 )) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6117 3.9173 -0.3007 REMARK 3 T TENSOR REMARK 3 T11: 0.6945 T22: 0.5054 REMARK 3 T33: 0.3542 T12: 0.1234 REMARK 3 T13: -0.0225 T23: -0.1654 REMARK 3 L TENSOR REMARK 3 L11: 1.8020 L22: 1.2647 REMARK 3 L33: 4.6104 L12: -0.6367 REMARK 3 L13: 1.9587 L23: -2.2965 REMARK 3 S TENSOR REMARK 3 S11: -0.2707 S12: -0.6266 S13: 0.5023 REMARK 3 S21: 0.7456 S22: -0.1576 S23: -0.0018 REMARK 3 S31: -0.4238 S32: -0.0741 S33: -0.2388 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 117 THROUGH 141 )) OR ( REMARK 3 CHAIN 'S' AND RESID 63 ) OR ( CHAIN 'S' AND RESID 71 REMARK 3 ) OR ( CHAIN 'S' AND RESID 86 ) OR ( CHAIN 'S' AND REMARK 3 RESID 99 ) OR ( CHAIN 'S' AND RESID 101 ) OR ( CHAIN REMARK 3 'S' AND RESID 152 ) OR ( CHAIN 'S' AND RESID 159 ) REMARK 3 OR ( CHAIN 'S' AND RESID 174 ) OR ( CHAIN 'S' AND REMARK 3 RESID 175 ) OR ( CHAIN 'S' AND RESID 186 )) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3476 -6.8232 -4.2023 REMARK 3 T TENSOR REMARK 3 T11: 0.5780 T22: 0.4525 REMARK 3 T33: 0.2893 T12: 0.1119 REMARK 3 T13: 0.0763 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 2.2209 L22: 0.9292 REMARK 3 L33: 1.3848 L12: 0.6064 REMARK 3 L13: 0.1636 L23: 0.1258 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: -0.6648 S13: 0.1186 REMARK 3 S21: 0.4789 S22: 0.1060 S23: 0.2867 REMARK 3 S31: -0.1934 S32: -0.4485 S33: 0.0359 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 142 THROUGH 187 )) OR ( REMARK 3 CHAIN 'A' AND RESID 998 ) OR ( CHAIN 'B' AND RESID 1 REMARK 3 ) OR ( CHAIN 'S' AND RESID 1 ) OR ( CHAIN 'S' AND REMARK 3 RESID 5 ) OR ( CHAIN 'S' AND RESID 9 ) OR ( CHAIN 'S' REMARK 3 AND RESID 15 ) OR ( CHAIN 'S' AND RESID 27 ) OR ( REMARK 3 CHAIN 'S' AND RESID 28 ) OR ( CHAIN 'S' AND RESID 33 REMARK 3 ) OR ( CHAIN 'S' AND RESID 34 ) OR ( CHAIN 'S' AND REMARK 3 RESID 38 ) OR ( CHAIN 'S' AND RESID 43 ) OR ( CHAIN ' REMARK 3 S' AND RESID 46 ) OR ( CHAIN 'S' AND RESID 66 ) OR ( REMARK 3 CHAIN 'S' AND RESID 78 ) OR ( CHAIN 'S' AND RESID 80 REMARK 3 ) OR ( CHAIN 'S' AND RESID 82 ) OR ( CHAIN 'S' AND REMARK 3 RESID 87 ) OR ( CHAIN 'S' AND RESID 90 ) OR ( CHAIN ' REMARK 3 S' AND RESID 92 ) OR ( CHAIN 'S' AND RESID 96 ) OR ( REMARK 3 CHAIN 'S' AND RESID 102 ) OR ( CHAIN 'S' AND RESID REMARK 3 109 ) OR ( CHAIN 'S' AND RESID 118 ) OR ( CHAIN 'S' REMARK 3 AND RESID 122 ) OR ( CHAIN 'S' AND RESID 125 ) OR ( REMARK 3 CHAIN 'S' AND RESID 126 ) OR ( CHAIN 'S' AND RESID REMARK 3 128 ) OR ( CHAIN 'S' AND RESID 134 ) OR ( CHAIN 'S' REMARK 3 AND RESID 135 ) OR ( CHAIN 'S' AND RESID 136 ) OR ( REMARK 3 CHAIN 'S' AND RESID 143 ) OR ( CHAIN 'S' AND RESID REMARK 3 145 ) OR ( CHAIN 'S' AND RESID 165 ) OR ( CHAIN 'S' REMARK 3 AND RESID 167 ) OR ( CHAIN 'S' AND RESID 178 ) OR ( REMARK 3 CHAIN 'S' AND RESID 185 ) OR ( CHAIN 'S' AND RESID REMARK 3 188 )) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5956 -13.7242 -15.6662 REMARK 3 T TENSOR REMARK 3 T11: 0.2741 T22: 0.1788 REMARK 3 T33: 0.2520 T12: 0.0251 REMARK 3 T13: -0.0502 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.3436 L22: 0.9136 REMARK 3 L33: 1.6766 L12: -0.3349 REMARK 3 L13: -0.4849 L23: 0.0446 REMARK 3 S TENSOR REMARK 3 S11: -0.1277 S12: -0.0328 S13: -0.2567 REMARK 3 S21: 0.2902 S22: 0.0723 S23: -0.0011 REMARK 3 S31: 0.1494 S32: 0.0376 S33: 0.0511 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 188 THROUGH 254 )) OR ( REMARK 3 CHAIN 'S' AND RESID 2 ) OR ( CHAIN 'S' AND RESID 3 ) REMARK 3 OR ( CHAIN 'S' AND RESID 6 ) OR ( CHAIN 'S' AND REMARK 3 RESID 7 ) OR ( CHAIN 'S' AND RESID 8 ) OR ( CHAIN 'S' REMARK 3 AND RESID 11 ) OR ( CHAIN 'S' AND RESID 16 ) OR ( REMARK 3 CHAIN 'S' AND RESID 17 ) OR ( CHAIN 'S' AND RESID 18 REMARK 3 ) OR ( CHAIN 'S' AND RESID 20 ) OR ( CHAIN 'S' AND REMARK 3 RESID 21 ) OR ( CHAIN 'S' AND RESID 22 ) OR ( CHAIN ' REMARK 3 S' AND RESID 24 ) OR ( CHAIN 'S' AND RESID 26 ) OR ( REMARK 3 CHAIN 'S' AND RESID 29 ) OR ( CHAIN 'S' AND RESID 30 REMARK 3 ) OR ( CHAIN 'S' AND RESID 31 ) OR ( CHAIN 'S' AND REMARK 3 RESID 35 ) OR ( CHAIN 'S' AND RESID 36 ) OR ( CHAIN ' REMARK 3 S' AND RESID 41 ) OR ( CHAIN 'S' AND RESID 42 ) OR ( REMARK 3 CHAIN 'S' AND RESID 45 ) OR ( CHAIN 'S' AND RESID 47 REMARK 3 ) OR ( CHAIN 'S' AND RESID 49 ) OR ( CHAIN 'S' AND REMARK 3 RESID 53 ) OR ( CHAIN 'S' AND RESID 55 ) OR ( CHAIN ' REMARK 3 S' AND RESID 56 ) OR ( CHAIN 'S' AND RESID 62 ) OR ( REMARK 3 CHAIN 'S' AND RESID 64 ) OR ( CHAIN 'S' AND RESID 67 REMARK 3 ) OR ( CHAIN 'S' AND RESID 70 ) OR ( CHAIN 'S' AND REMARK 3 RESID 72 ) OR ( CHAIN 'S' AND RESID 81 ) OR ( CHAIN ' REMARK 3 S' AND RESID 83 ) OR ( CHAIN 'S' AND RESID 88 ) OR ( REMARK 3 CHAIN 'S' AND RESID 93 ) OR ( CHAIN 'S' AND RESID 95 REMARK 3 ) OR ( CHAIN 'S' AND RESID 103 ) OR ( CHAIN 'S' AND REMARK 3 RESID 106 ) OR ( CHAIN 'S' AND RESID 115 ) OR ( REMARK 3 CHAIN 'S' AND RESID 116 ) OR ( CHAIN 'S' AND RESID REMARK 3 117 ) OR ( CHAIN 'S' AND RESID 123 ) OR ( CHAIN 'S' REMARK 3 AND RESID 129 ) OR ( CHAIN 'S' AND RESID 133 ) OR ( REMARK 3 CHAIN 'S' AND RESID 140 ) OR ( CHAIN 'S' AND RESID REMARK 3 153 ) OR ( CHAIN 'S' AND RESID 154 ) OR ( CHAIN 'S' REMARK 3 AND RESID 155 ) OR ( CHAIN 'S' AND RESID 158 ) OR ( REMARK 3 CHAIN 'S' AND RESID 161 ) OR ( CHAIN 'S' AND RESID REMARK 3 179 ) OR ( CHAIN 'S' AND RESID 180 ) OR ( CHAIN 'S' REMARK 3 AND RESID 187 ) OR ( CHAIN 'S' AND RESID 189 )) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8016 -5.1571 -17.7805 REMARK 3 T TENSOR REMARK 3 T11: 0.2652 T22: 0.2289 REMARK 3 T33: 0.2528 T12: 0.0409 REMARK 3 T13: -0.0845 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.3088 L22: 2.1798 REMARK 3 L33: 1.0549 L12: 0.9929 REMARK 3 L13: -0.2429 L23: 0.3091 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.0388 S13: -0.1449 REMARK 3 S21: 0.1993 S22: 0.0772 S23: -0.3114 REMARK 3 S31: -0.0624 S32: 0.1847 S33: -0.0108 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 255 THROUGH 280 )) OR ( REMARK 3 CHAIN 'S' AND RESID 37 ) OR ( CHAIN 'S' AND RESID 39 REMARK 3 ) OR ( CHAIN 'S' AND RESID 51 ) OR ( CHAIN 'S' AND REMARK 3 RESID 52 ) OR ( CHAIN 'S' AND RESID 54 ) OR ( CHAIN ' REMARK 3 S' AND RESID 58 ) OR ( CHAIN 'S' AND RESID 76 ) OR ( REMARK 3 CHAIN 'S' AND RESID 94 ) OR ( CHAIN 'S' AND RESID 97 REMARK 3 ) OR ( CHAIN 'S' AND RESID 107 ) OR ( CHAIN 'S' AND REMARK 3 RESID 110 ) OR ( CHAIN 'S' AND RESID 119 ) OR ( REMARK 3 CHAIN 'S' AND RESID 127 ) OR ( CHAIN 'S' AND RESID REMARK 3 138 ) OR ( CHAIN 'S' AND RESID 149 ) OR ( CHAIN 'S' REMARK 3 AND RESID 156 ) OR ( CHAIN 'S' AND RESID 157 ) OR ( REMARK 3 CHAIN 'S' AND RESID 164 ) OR ( CHAIN 'S' AND RESID REMARK 3 173 ) OR ( CHAIN 'S' AND RESID 177 )) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6343 11.5386 -14.4582 REMARK 3 T TENSOR REMARK 3 T11: 0.5508 T22: 0.2708 REMARK 3 T33: 0.5345 T12: 0.0575 REMARK 3 T13: -0.1004 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 3.3817 L22: 0.8787 REMARK 3 L33: 0.7967 L12: 0.8020 REMARK 3 L13: -0.1061 L23: 0.2486 REMARK 3 S TENSOR REMARK 3 S11: 0.1429 S12: -0.1091 S13: 0.8820 REMARK 3 S21: 0.1787 S22: -0.0757 S23: 0.2613 REMARK 3 S31: -0.3639 S32: -0.1103 S33: -0.1081 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25730 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.10 REMARK 200 R MERGE FOR SHELL (I) : 1.85300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2Q0I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 200 MM MGCL2, 31% REMARK 280 PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.31933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.65967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.65967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.31933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 671 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ASP A 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CE REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 ARG A 122 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 GLU A 199 CD OE1 OE2 REMARK 470 ARG A 288 CZ NH1 NH2 REMARK 470 LEU A 298 CD1 CD2 REMARK 470 LEU A 300 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 19 O HOH A 501 1.93 REMARK 500 O GLY A 279 O HOH A 502 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 38 146.66 80.73 REMARK 500 CYS A 75 12.12 -148.12 REMARK 500 ASP A 196 -51.81 -130.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 HIS A 71 ND1 91.2 REMARK 620 3 HIS A 159 NE2 106.3 96.4 REMARK 620 4 ASP A 178 OD2 94.8 171.7 87.5 REMARK 620 5 61M A 403 O13 120.5 103.8 127.9 68.1 REMARK 620 6 61M A 403 O12 168.5 78.2 79.8 95.2 58.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 73 OD2 REMARK 620 2 HIS A 74 NE2 90.3 REMARK 620 3 ASP A 178 OD2 152.0 83.4 REMARK 620 4 HIS A 221 NE2 92.3 98.1 115.5 REMARK 620 5 61M A 403 O09 89.1 177.0 95.7 84.9 REMARK 620 6 61M A 403 O13 83.0 93.5 70.2 167.6 83.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 61M A 403 DBREF 5HIO A 1 301 UNP P20581 Y1000_PSEAE 1 301 SEQADV 5HIO GLY A -1 UNP P20581 EXPRESSION TAG SEQADV 5HIO HIS A 0 UNP P20581 EXPRESSION TAG SEQRES 1 A 303 GLY HIS MET LEU ARG LEU SER ALA PRO GLY GLN LEU ASP SEQRES 2 A 303 ASP ASP LEU CYS LEU LEU GLY ASP VAL GLN VAL PRO VAL SEQRES 3 A 303 PHE LEU LEU ARG LEU GLY GLU ALA SER TRP ALA LEU VAL SEQRES 4 A 303 GLU GLY GLY ILE SER ARG ASP ALA GLU LEU VAL TRP ALA SEQRES 5 A 303 ASP LEU CYS ARG TRP VAL ALA ASP PRO SER GLN VAL HIS SEQRES 6 A 303 TYR TRP LEU ILE THR HIS LYS HIS TYR ASP HIS CYS GLY SEQRES 7 A 303 LEU LEU PRO TYR LEU CYS PRO ARG LEU PRO ASN VAL GLN SEQRES 8 A 303 VAL LEU ALA SER GLU ARG THR CYS GLN ALA TRP LYS SER SEQRES 9 A 303 GLU SER ALA VAL ARG VAL VAL GLU ARG LEU ASN ARG GLN SEQRES 10 A 303 LEU LEU ARG ALA GLU GLN ARG LEU PRO GLU ALA CYS ALA SEQRES 11 A 303 TRP ASP ALA LEU PRO VAL ARG ALA VAL ALA ASP GLY GLU SEQRES 12 A 303 TRP LEU GLU LEU GLY PRO ARG HIS ARG LEU GLN VAL ILE SEQRES 13 A 303 GLU ALA HIS GLY HIS SER ASP ASP HIS VAL VAL PHE TYR SEQRES 14 A 303 ASP VAL ARG ARG ARG ARG LEU PHE CYS GLY ASP ALA LEU SEQRES 15 A 303 GLY GLU PHE ASP GLU ALA GLU GLY VAL TRP ARG PRO LEU SEQRES 16 A 303 VAL PHE ASP ASP MET GLU ALA TYR LEU GLU SER LEU GLU SEQRES 17 A 303 ARG LEU GLN ARG LEU PRO THR LEU LEU GLN LEU ILE PRO SEQRES 18 A 303 GLY HIS GLY GLY LEU LEU ARG GLY ARG LEU ALA ALA ASP SEQRES 19 A 303 GLY ALA GLU SER ALA TYR THR GLU CYS LEU ARG LEU CYS SEQRES 20 A 303 ARG ARG LEU LEU TRP ARG GLN SER MET GLY GLU SER LEU SEQRES 21 A 303 ASP GLU LEU SER GLU GLU LEU HIS ARG ALA TRP GLY GLY SEQRES 22 A 303 GLN SER VAL ASP PHE LEU PRO GLY GLU LEU HIS LEU GLY SEQRES 23 A 303 SER MET ARG ARG MET LEU GLU ILE LEU SER ARG GLN ALA SEQRES 24 A 303 LEU PRO LEU ASP HET FE A 401 1 HET FE A 402 1 HET 61M A 403 21 HETNAM FE FE (III) ION HETNAM 61M 3-(2-AMINOPHENYL)-3-OXOPROPANOIC ACID HETSYN 61M 2-AMINOBENZOYLACETATE FORMUL 2 FE 2(FE 3+) FORMUL 4 61M C9 H9 N O3 FORMUL 5 HOH *195(H2 O) HELIX 1 AA1 ILE A 41 ARG A 43 5 3 HELIX 2 AA2 ASP A 44 VAL A 56 1 13 HELIX 3 AA3 ASP A 58 SER A 60 5 3 HELIX 4 AA4 HIS A 71 GLY A 76 1 6 HELIX 5 AA5 LEU A 77 CYS A 82 1 6 HELIX 6 AA6 PRO A 83 LEU A 85 5 3 HELIX 7 AA7 GLU A 94 TRP A 100 1 7 HELIX 8 AA8 SER A 102 GLN A 115 1 14 HELIX 9 AA9 ALA A 128 LEU A 132 5 5 HELIX 10 AB1 ASP A 197 ARG A 210 1 14 HELIX 11 AB2 GLY A 227 ASP A 232 1 6 HELIX 12 AB3 ASP A 232 MET A 254 1 23 HELIX 13 AB4 SER A 257 GLY A 270 1 14 HELIX 14 AB5 GLU A 280 LEU A 298 1 19 SHEET 1 AA1 7 ARG A 3 LEU A 4 0 SHEET 2 AA1 7 LEU A 224 ARG A 226 -1 O LEU A 224 N LEU A 4 SHEET 3 AA1 7 GLN A 216 PRO A 219 -1 N LEU A 217 O LEU A 225 SHEET 4 AA1 7 ARG A 173 GLY A 177 1 N LEU A 174 O ILE A 218 SHEET 5 AA1 7 VAL A 164 ASP A 168 -1 N ASP A 168 O ARG A 173 SHEET 6 AA1 7 HIS A 149 GLU A 155 -1 N GLN A 152 O TYR A 167 SHEET 7 AA1 7 TRP A 142 GLY A 146 -1 N LEU A 143 O LEU A 151 SHEET 1 AA2 7 GLY A 8 ASP A 11 0 SHEET 2 AA2 7 LEU A 14 LEU A 17 -1 O LEU A 14 N LEU A 10 SHEET 3 AA2 7 VAL A 24 GLY A 30 -1 O VAL A 24 N LEU A 17 SHEET 4 AA2 7 SER A 33 VAL A 37 -1 O ALA A 35 N LEU A 27 SHEET 5 AA2 7 VAL A 62 LEU A 66 1 O LEU A 66 N LEU A 36 SHEET 6 AA2 7 GLN A 89 SER A 93 1 O LEU A 91 N TRP A 65 SHEET 7 AA2 7 VAL A 134 VAL A 137 1 O ARG A 135 N VAL A 90 SHEET 1 AA3 2 GLU A 182 PHE A 183 0 SHEET 2 AA3 2 TRP A 190 ARG A 191 -1 O ARG A 191 N GLU A 182 SSBOND 1 CYS A 82 CYS A 127 1555 1555 2.06 LINK NE2 HIS A 69 FE FE A 401 1555 1555 2.14 LINK ND1 HIS A 71 FE FE A 401 1555 1555 2.09 LINK OD2 ASP A 73 FE FE A 402 1555 1555 2.29 LINK NE2 HIS A 74 FE FE A 402 1555 1555 2.11 LINK NE2 HIS A 159 FE FE A 401 1555 1555 2.03 LINK OD2 ASP A 178 FE FE A 401 1555 1555 2.61 LINK OD2 ASP A 178 FE FE A 402 1555 1555 2.23 LINK NE2 HIS A 221 FE FE A 402 1555 1555 2.15 LINK FE FE A 401 O13 61M A 403 1555 1555 1.93 LINK FE FE A 401 O12 61M A 403 1555 1555 2.49 LINK FE FE A 402 O09 61M A 403 1555 1555 2.17 LINK FE FE A 402 O13 61M A 403 1555 1555 2.30 SITE 1 AC1 6 HIS A 69 HIS A 71 HIS A 159 ASP A 178 SITE 2 AC1 6 FE A 402 61M A 403 SITE 1 AC2 6 ASP A 73 HIS A 74 ASP A 178 HIS A 221 SITE 2 AC2 6 FE A 401 61M A 403 SITE 1 AC3 14 HIS A 69 HIS A 71 ASP A 73 HIS A 74 SITE 2 AC3 14 HIS A 159 ASP A 178 GLU A 182 LEU A 193 SITE 3 AC3 14 PHE A 195 HIS A 221 LEU A 277 HIS A 282 SITE 4 AC3 14 FE A 401 FE A 402 CRYST1 61.124 61.124 145.979 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016360 0.009446 0.000000 0.00000 SCALE2 0.000000 0.018891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006850 0.00000