HEADER METAL BINDING PROTEIN 12-JAN-16 5HIQ TITLE CRYSTAL STRUCTURE OF PQS RESPONSE PROTEIN PQSE IN COMPLEX WITH 2-(1H- TITLE 2 PYRROL-1-YL)BENZOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PQSE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 GENE: PA1000; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET19M KEYWDS QUORUM SENSING, PQS, PQSE, INHIBITOR, PSEUDOMONAS, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.WITZGALL,W.BLANKENFELDT REVDAT 3 10-JAN-24 5HIQ 1 REMARK REVDAT 2 29-JUN-16 5HIQ 1 JRNL REVDAT 1 27-APR-16 5HIQ 0 JRNL AUTH M.ZENDER,F.WITZGALL,S.L.DREES,E.WEIDEL,C.K.MAURER,S.FETZNER, JRNL AUTH 2 W.BLANKENFELDT,M.EMPTING,R.W.HARTMANN JRNL TITL DISSECTING THE MULTIPLE ROLES OF PQSE IN PSEUDOMONAS JRNL TITL 2 AERUGINOSA VIRULENCE BY DISCOVERY OF SMALL TOOL COMPOUNDS. JRNL REF ACS CHEM.BIOL. V. 11 1755 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27082157 JRNL DOI 10.1021/ACSCHEMBIO.6B00156 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7717 - 4.0164 1.00 2761 134 0.1738 0.2288 REMARK 3 2 4.0164 - 3.1882 1.00 2611 125 0.1722 0.2002 REMARK 3 3 3.1882 - 2.7853 1.00 2551 151 0.1979 0.2486 REMARK 3 4 2.7853 - 2.5307 1.00 2557 139 0.2010 0.2495 REMARK 3 5 2.5307 - 2.3493 1.00 2542 125 0.2050 0.2144 REMARK 3 6 2.3493 - 2.2108 1.00 2568 127 0.2374 0.2818 REMARK 3 7 2.2108 - 2.1001 1.00 2521 119 0.2774 0.3245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2497 REMARK 3 ANGLE : 0.455 3388 REMARK 3 CHIRALITY : 0.038 367 REMARK 3 PLANARITY : 0.002 445 REMARK 3 DIHEDRAL : 8.150 1484 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 18 THROUGH 102 )) OR ( CHAIN REMARK 3 'S' AND RESID 3 ) OR ( CHAIN 'S' AND RESID 6 ) OR ( REMARK 3 CHAIN 'S' AND RESID 10 ) OR ( CHAIN 'S' AND RESID 12 REMARK 3 ) OR ( CHAIN 'S' AND RESID 16 ) OR ( CHAIN 'S' AND REMARK 3 RESID 28 ) OR ( CHAIN 'S' AND RESID 29 ) OR ( CHAIN ' REMARK 3 S' AND RESID 32 ) OR ( CHAIN 'S' AND RESID 35 ) OR ( REMARK 3 CHAIN 'S' AND RESID 38 ) OR ( CHAIN 'S' AND RESID 42 REMARK 3 ) OR ( CHAIN 'S' AND RESID 54 ) OR ( CHAIN 'S' AND REMARK 3 RESID 59 ) OR ( CHAIN 'S' AND RESID 60 ) OR ( CHAIN ' REMARK 3 S' AND RESID 62 ) OR ( CHAIN 'S' AND RESID 63 ) OR ( REMARK 3 CHAIN 'S' AND RESID 65 ) OR ( CHAIN 'S' AND RESID 72 REMARK 3 ) OR ( CHAIN 'S' AND RESID 74 ) OR ( CHAIN 'S' AND REMARK 3 RESID 82 ) OR ( CHAIN 'S' AND RESID 84 ) OR ( CHAIN ' REMARK 3 S' AND RESID 85 ) OR ( CHAIN 'S' AND RESID 86 ) OR ( REMARK 3 CHAIN 'S' AND RESID 87 ) OR ( CHAIN 'S' AND RESID 89 REMARK 3 ) OR ( CHAIN 'S' AND RESID 91 ) OR ( CHAIN 'S' AND REMARK 3 RESID 98 ) OR ( CHAIN 'S' AND RESID 99 ) OR ( CHAIN ' REMARK 3 S' AND RESID 107 ) OR ( CHAIN 'S' AND RESID 112 ) OR REMARK 3 ( CHAIN 'S' AND RESID 116 ) OR ( CHAIN 'S' AND RESID REMARK 3 118 ) OR ( CHAIN 'S' AND RESID 121 ) OR ( CHAIN 'S' REMARK 3 AND RESID 124 ) OR ( CHAIN 'S' AND RESID 125 ) OR ( REMARK 3 CHAIN 'S' AND RESID 127 ) OR ( CHAIN 'S' AND RESID REMARK 3 135 ) OR ( CHAIN 'S' AND RESID 137 ) OR ( CHAIN 'S' REMARK 3 AND RESID 138 ) OR ( CHAIN 'S' AND RESID 140 ) OR ( REMARK 3 CHAIN 'S' AND RESID 141 ) OR ( CHAIN 'S' AND RESID REMARK 3 145 ) OR ( CHAIN 'S' AND RESID 153 )) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3830 -10.2889 -11.3066 REMARK 3 T TENSOR REMARK 3 T11: 0.2564 T22: 0.2440 REMARK 3 T33: 0.2413 T12: 0.0372 REMARK 3 T13: 0.0576 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 3.2980 L22: 2.6706 REMARK 3 L33: 1.9658 L12: -0.0892 REMARK 3 L13: 0.0489 L23: 0.1019 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -0.2315 S13: -0.1737 REMARK 3 S21: 0.2700 S22: 0.0741 S23: 0.2671 REMARK 3 S31: -0.0119 S32: -0.2555 S33: -0.0188 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 103 THROUGH 116 )) OR ( REMARK 3 CHAIN 'S' AND RESID 122 ) OR ( CHAIN 'S' AND RESID REMARK 3 146 ) OR ( CHAIN 'S' AND RESID 147 )) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3288 3.4069 -0.1708 REMARK 3 T TENSOR REMARK 3 T11: 0.5644 T22: 0.4380 REMARK 3 T33: 0.3081 T12: 0.0970 REMARK 3 T13: 0.0004 T23: -0.1435 REMARK 3 L TENSOR REMARK 3 L11: 1.3545 L22: 3.1420 REMARK 3 L33: 6.0520 L12: 0.7771 REMARK 3 L13: 0.6936 L23: -3.5220 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: -0.8853 S13: 0.4931 REMARK 3 S21: 0.6547 S22: -0.1090 S23: 0.4299 REMARK 3 S31: -0.4985 S32: -0.0361 S33: 0.0602 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 117 THROUGH 141 )) OR ( REMARK 3 CHAIN 'S' AND RESID 41 ) OR ( CHAIN 'S' AND RESID 43 REMARK 3 ) OR ( CHAIN 'S' AND RESID 44 ) OR ( CHAIN 'S' AND REMARK 3 RESID 66 ) OR ( CHAIN 'S' AND RESID 68 ) OR ( CHAIN ' REMARK 3 S' AND RESID 78 ) OR ( CHAIN 'S' AND RESID 100 ) OR REMARK 3 ( CHAIN 'S' AND RESID 115 ) OR ( CHAIN 'S' AND RESID REMARK 3 148 )) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0887 -8.0816 -3.5019 REMARK 3 T TENSOR REMARK 3 T11: 0.4369 T22: 0.3488 REMARK 3 T33: 0.3263 T12: 0.0883 REMARK 3 T13: 0.0272 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 2.3126 L22: 1.5293 REMARK 3 L33: 1.8316 L12: 0.7195 REMARK 3 L13: -0.6076 L23: 0.8798 REMARK 3 S TENSOR REMARK 3 S11: -0.1722 S12: -0.3416 S13: 0.2911 REMARK 3 S21: 0.4554 S22: 0.0358 S23: 0.1954 REMARK 3 S31: 0.0937 S32: -0.3795 S33: 0.1268 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 142 THROUGH 155 )) OR ( REMARK 3 CHAIN 'S' AND RESID 53 ) OR ( CHAIN 'S' AND RESID 76 REMARK 3 ) OR ( CHAIN 'S' AND RESID 88 ) OR ( CHAIN 'S' AND REMARK 3 RESID 92 ) OR ( CHAIN 'S' AND RESID 136 ) OR ( CHAIN REMARK 3 'S' AND RESID 139 ) OR ( CHAIN 'S' AND RESID 149 )) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0984 -24.1791 -13.8113 REMARK 3 T TENSOR REMARK 3 T11: 0.4050 T22: 0.1600 REMARK 3 T33: 0.3754 T12: 0.0369 REMARK 3 T13: 0.0188 T23: 0.0717 REMARK 3 L TENSOR REMARK 3 L11: 5.5683 L22: 1.5267 REMARK 3 L33: 2.1751 L12: -0.7893 REMARK 3 L13: -0.0960 L23: -0.1743 REMARK 3 S TENSOR REMARK 3 S11: -0.1600 S12: 0.0890 S13: -1.1359 REMARK 3 S21: 0.0769 S22: -0.0477 S23: 0.1504 REMARK 3 S31: 0.6852 S32: -0.0307 S33: -0.1777 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 156 THROUGH 210 )) OR ( REMARK 3 CHAIN 'A' AND RESID 998 ) OR ( CHAIN 'A' AND RESID REMARK 3 999 ) OR ( CHAIN 'S' AND RESID 4 ) OR ( CHAIN 'S' REMARK 3 AND RESID 5 ) OR ( CHAIN 'S' AND RESID 8 ) OR ( REMARK 3 CHAIN 'S' AND RESID 9 ) OR ( CHAIN 'S' AND RESID 11 ) REMARK 3 OR ( CHAIN 'S' AND RESID 13 ) OR ( CHAIN 'S' AND REMARK 3 RESID 15 ) OR ( CHAIN 'S' AND RESID 18 ) OR ( CHAIN ' REMARK 3 S' AND RESID 20 ) OR ( CHAIN 'S' AND RESID 21 ) OR ( REMARK 3 CHAIN 'S' AND RESID 23 ) OR ( CHAIN 'S' AND RESID 24 REMARK 3 ) OR ( CHAIN 'S' AND RESID 27 ) OR ( CHAIN 'S' AND REMARK 3 RESID 36 ) OR ( CHAIN 'S' AND RESID 45 ) OR ( CHAIN ' REMARK 3 S' AND RESID 47 ) OR ( CHAIN 'S' AND RESID 48 ) OR ( REMARK 3 CHAIN 'S' AND RESID 49 ) OR ( CHAIN 'S' AND RESID 51 REMARK 3 ) OR ( CHAIN 'S' AND RESID 52 ) OR ( CHAIN 'S' AND REMARK 3 RESID 64 ) OR ( CHAIN 'S' AND RESID 75 ) OR ( CHAIN ' REMARK 3 S' AND RESID 80 ) OR ( CHAIN 'S' AND RESID 83 ) OR ( REMARK 3 CHAIN 'S' AND RESID 90 ) OR ( CHAIN 'S' AND RESID REMARK 3 106 ) OR ( CHAIN 'S' AND RESID 108 ) OR ( CHAIN 'S' REMARK 3 AND RESID 109 ) OR ( CHAIN 'S' AND RESID 128 ) OR ( REMARK 3 CHAIN 'S' AND RESID 132 ) OR ( CHAIN 'S' AND RESID REMARK 3 150 ) OR ( CHAIN 'S' AND RESID 151 )) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1465 -8.6267 -14.7971 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.2080 REMARK 3 T33: 0.2184 T12: 0.0300 REMARK 3 T13: -0.0673 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.9158 L22: 1.6078 REMARK 3 L33: 1.4319 L12: 0.0821 REMARK 3 L13: -0.4183 L23: 0.3349 REMARK 3 S TENSOR REMARK 3 S11: -0.0714 S12: -0.1310 S13: -0.0701 REMARK 3 S21: 0.3187 S22: 0.0700 S23: -0.1397 REMARK 3 S31: 0.0288 S32: 0.1766 S33: 0.0065 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 211 THROUGH 254 )) OR ( REMARK 3 CHAIN 'S' AND RESID 1 ) OR ( CHAIN 'S' AND RESID 2 ) REMARK 3 OR ( CHAIN 'S' AND RESID 7 ) OR ( CHAIN 'S' AND REMARK 3 RESID 14 ) OR ( CHAIN 'S' AND RESID 17 ) OR ( CHAIN ' REMARK 3 S' AND RESID 22 ) OR ( CHAIN 'S' AND RESID 25 ) OR ( REMARK 3 CHAIN 'S' AND RESID 26 ) OR ( CHAIN 'S' AND RESID 30 REMARK 3 ) OR ( CHAIN 'S' AND RESID 31 ) OR ( CHAIN 'S' AND REMARK 3 RESID 34 ) OR ( CHAIN 'S' AND RESID 37 ) OR ( CHAIN ' REMARK 3 S' AND RESID 39 ) OR ( CHAIN 'S' AND RESID 40 ) OR ( REMARK 3 CHAIN 'S' AND RESID 55 ) OR ( CHAIN 'S' AND RESID 56 REMARK 3 ) OR ( CHAIN 'S' AND RESID 57 ) OR ( CHAIN 'S' AND REMARK 3 RESID 58 ) OR ( CHAIN 'S' AND RESID 69 ) OR ( CHAIN ' REMARK 3 S' AND RESID 71 ) OR ( CHAIN 'S' AND RESID 79 ) OR ( REMARK 3 CHAIN 'S' AND RESID 93 ) OR ( CHAIN 'S' AND RESID 95 REMARK 3 ) OR ( CHAIN 'S' AND RESID 104 ) OR ( CHAIN 'S' AND REMARK 3 RESID 111 ) OR ( CHAIN 'S' AND RESID 117 ) OR ( REMARK 3 CHAIN 'S' AND RESID 129 ) OR ( CHAIN 'S' AND RESID REMARK 3 130 )) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8221 -4.1051 -20.4699 REMARK 3 T TENSOR REMARK 3 T11: 0.2554 T22: 0.2558 REMARK 3 T33: 0.2228 T12: 0.0067 REMARK 3 T13: -0.0483 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.7378 L22: 1.6820 REMARK 3 L33: 0.6129 L12: 1.4439 REMARK 3 L13: -0.2184 L23: 0.3784 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: 0.1205 S13: 0.0455 REMARK 3 S21: 0.0638 S22: 0.0867 S23: -0.0462 REMARK 3 S31: -0.0622 S32: 0.2245 S33: -0.0087 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 255 THROUGH 278 )) OR ( REMARK 3 CHAIN 'S' AND RESID 19 ) OR ( CHAIN 'S' AND RESID 97 REMARK 3 ) OR ( CHAIN 'S' AND RESID 103 ) OR ( CHAIN 'S' AND REMARK 3 RESID 105 ) OR ( CHAIN 'S' AND RESID 120 ) OR ( REMARK 3 CHAIN 'S' AND RESID 131 )) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2152 11.2151 -14.0877 REMARK 3 T TENSOR REMARK 3 T11: 0.7213 T22: 0.3794 REMARK 3 T33: 0.6911 T12: 0.0275 REMARK 3 T13: -0.0848 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.9454 L22: 0.3726 REMARK 3 L33: 1.5644 L12: -0.4471 REMARK 3 L13: 0.3906 L23: -0.2523 REMARK 3 S TENSOR REMARK 3 S11: 0.1310 S12: -0.2230 S13: 0.7538 REMARK 3 S21: -0.0720 S22: -0.1591 S23: 0.0943 REMARK 3 S31: -0.5887 S32: -0.2492 S33: 0.0253 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (( CHAIN 'A' AND (RESID 279 THROUGH 299 )) OR ( REMARK 3 CHAIN 'S' AND RESID 94 ) OR ( CHAIN 'S' AND RESID REMARK 3 152 )) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4618 6.6935 -6.5454 REMARK 3 T TENSOR REMARK 3 T11: 0.5348 T22: 0.3776 REMARK 3 T33: 0.3793 T12: -0.0784 REMARK 3 T13: -0.1041 T23: -0.1023 REMARK 3 L TENSOR REMARK 3 L11: 0.9412 L22: 2.3989 REMARK 3 L33: 2.5909 L12: 0.0938 REMARK 3 L13: 0.2181 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.2563 S13: 0.3315 REMARK 3 S21: -0.0767 S22: 0.0167 S23: 0.2145 REMARK 3 S31: -0.0816 S32: -0.0035 S33: 0.0257 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.763 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.19500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 1.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2Q0I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 200 MM MGCL2, 31% REMARK 280 PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.47467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.73733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.73733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.47467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 300 REMARK 465 ASP A 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 94 CD OE1 OE2 REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 125 CB CG CD OE1 OE2 REMARK 470 GLU A 199 CD OE1 OE2 REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 287 CZ NH1 NH2 REMARK 470 ARG A 288 NE CZ NH1 NH2 REMARK 470 LEU A 298 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 33 O HOH A 511 1.58 REMARK 500 HE2 HIS A 69 FE FE A 401 1.59 REMARK 500 OD1 ASP A 12 O HOH A 501 2.09 REMARK 500 O HOH A 605 O HOH A 623 2.12 REMARK 500 OD1 ASP A 19 O HOH A 502 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 54 O LEU A 211 6454 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 132 C PRO A 133 N 0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 38 141.65 79.26 REMARK 500 CYS A 75 10.46 -152.96 REMARK 500 ALA A 156 59.37 -142.18 REMARK 500 ASP A 196 -62.43 -138.63 REMARK 500 ALA A 297 75.81 -174.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 658 DISTANCE = 7.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 HIS A 71 ND1 76.0 REMARK 620 3 HIS A 159 NE2 92.4 81.5 REMARK 620 4 ASP A 178 OD2 100.6 172.8 92.5 REMARK 620 5 60Q A 403 O08 177.9 104.6 85.8 78.6 REMARK 620 6 HOH A 508 O 111.1 90.6 152.7 96.5 70.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 73 OD2 REMARK 620 2 HIS A 74 NE2 84.7 REMARK 620 3 ASP A 178 OD2 169.4 87.3 REMARK 620 4 HIS A 221 NE2 84.2 86.0 102.3 REMARK 620 5 60Q A 403 O09 88.3 167.7 100.7 83.2 REMARK 620 6 HOH A 508 O 75.0 100.3 99.6 157.4 87.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 60Q A 403 DBREF 5HIQ A 1 301 UNP P20581 Y1000_PSEAE 1 301 SEQADV 5HIQ GLY A -1 UNP P20581 EXPRESSION TAG SEQADV 5HIQ HIS A 0 UNP P20581 EXPRESSION TAG SEQRES 1 A 303 GLY HIS MET LEU ARG LEU SER ALA PRO GLY GLN LEU ASP SEQRES 2 A 303 ASP ASP LEU CYS LEU LEU GLY ASP VAL GLN VAL PRO VAL SEQRES 3 A 303 PHE LEU LEU ARG LEU GLY GLU ALA SER TRP ALA LEU VAL SEQRES 4 A 303 GLU GLY GLY ILE SER ARG ASP ALA GLU LEU VAL TRP ALA SEQRES 5 A 303 ASP LEU CYS ARG TRP VAL ALA ASP PRO SER GLN VAL HIS SEQRES 6 A 303 TYR TRP LEU ILE THR HIS LYS HIS TYR ASP HIS CYS GLY SEQRES 7 A 303 LEU LEU PRO TYR LEU CYS PRO ARG LEU PRO ASN VAL GLN SEQRES 8 A 303 VAL LEU ALA SER GLU ARG THR CYS GLN ALA TRP LYS SER SEQRES 9 A 303 GLU SER ALA VAL ARG VAL VAL GLU ARG LEU ASN ARG GLN SEQRES 10 A 303 LEU LEU ARG ALA GLU GLN ARG LEU PRO GLU ALA CYS ALA SEQRES 11 A 303 TRP ASP ALA LEU PRO VAL ARG ALA VAL ALA ASP GLY GLU SEQRES 12 A 303 TRP LEU GLU LEU GLY PRO ARG HIS ARG LEU GLN VAL ILE SEQRES 13 A 303 GLU ALA HIS GLY HIS SER ASP ASP HIS VAL VAL PHE TYR SEQRES 14 A 303 ASP VAL ARG ARG ARG ARG LEU PHE CYS GLY ASP ALA LEU SEQRES 15 A 303 GLY GLU PHE ASP GLU ALA GLU GLY VAL TRP ARG PRO LEU SEQRES 16 A 303 VAL PHE ASP ASP MET GLU ALA TYR LEU GLU SER LEU GLU SEQRES 17 A 303 ARG LEU GLN ARG LEU PRO THR LEU LEU GLN LEU ILE PRO SEQRES 18 A 303 GLY HIS GLY GLY LEU LEU ARG GLY ARG LEU ALA ALA ASP SEQRES 19 A 303 GLY ALA GLU SER ALA TYR THR GLU CYS LEU ARG LEU CYS SEQRES 20 A 303 ARG ARG LEU LEU TRP ARG GLN SER MET GLY GLU SER LEU SEQRES 21 A 303 ASP GLU LEU SER GLU GLU LEU HIS ARG ALA TRP GLY GLY SEQRES 22 A 303 GLN SER VAL ASP PHE LEU PRO GLY GLU LEU HIS LEU GLY SEQRES 23 A 303 SER MET ARG ARG MET LEU GLU ILE LEU SER ARG GLN ALA SEQRES 24 A 303 LEU PRO LEU ASP HET FE A 401 1 HET FE A 402 1 HET 60Q A 403 22 HETNAM FE FE (III) ION HETNAM 60Q 2-PYRROL-1-YLBENZOIC ACID FORMUL 2 FE 2(FE 3+) FORMUL 4 60Q C11 H9 N O2 FORMUL 5 HOH *158(H2 O) HELIX 1 AA1 ILE A 41 ARG A 43 5 3 HELIX 2 AA2 ASP A 44 VAL A 56 1 13 HELIX 3 AA3 ASP A 58 SER A 60 5 3 HELIX 4 AA4 HIS A 71 CYS A 75 5 5 HELIX 5 AA5 LEU A 77 CYS A 82 1 6 HELIX 6 AA6 PRO A 83 LEU A 85 5 3 HELIX 7 AA7 GLU A 94 LYS A 101 1 8 HELIX 8 AA8 SER A 102 GLN A 115 1 14 HELIX 9 AA9 ALA A 128 LEU A 132 5 5 HELIX 10 AB1 ASP A 197 ARG A 210 1 14 HELIX 11 AB2 GLY A 227 ASP A 232 1 6 HELIX 12 AB3 ASP A 232 MET A 254 1 23 HELIX 13 AB4 SER A 257 GLY A 270 1 14 HELIX 14 AB5 PRO A 278 GLN A 296 1 19 SHEET 1 AA1 7 ARG A 3 LEU A 4 0 SHEET 2 AA1 7 LEU A 224 ARG A 226 -1 O LEU A 224 N LEU A 4 SHEET 3 AA1 7 GLN A 216 PRO A 219 -1 N LEU A 217 O LEU A 225 SHEET 4 AA1 7 ARG A 173 GLY A 177 1 N LEU A 174 O ILE A 218 SHEET 5 AA1 7 VAL A 164 ASP A 168 -1 N ASP A 168 O ARG A 173 SHEET 6 AA1 7 HIS A 149 GLU A 155 -1 N ILE A 154 O VAL A 165 SHEET 7 AA1 7 TRP A 142 GLY A 146 -1 N LEU A 143 O LEU A 151 SHEET 1 AA2 7 GLY A 8 ASP A 11 0 SHEET 2 AA2 7 LEU A 14 LEU A 17 -1 O LEU A 16 N GLY A 8 SHEET 3 AA2 7 VAL A 24 GLY A 30 -1 O VAL A 24 N LEU A 17 SHEET 4 AA2 7 SER A 33 VAL A 37 -1 O ALA A 35 N LEU A 27 SHEET 5 AA2 7 VAL A 62 LEU A 66 1 O LEU A 66 N LEU A 36 SHEET 6 AA2 7 GLN A 89 SER A 93 1 O LEU A 91 N TRP A 65 SHEET 7 AA2 7 VAL A 134 VAL A 137 1 O ARG A 135 N VAL A 90 SHEET 1 AA3 2 GLU A 182 PHE A 183 0 SHEET 2 AA3 2 TRP A 190 ARG A 191 -1 O ARG A 191 N GLU A 182 LINK NE2 HIS A 69 FE FE A 401 1555 1555 2.40 LINK ND1 HIS A 71 FE FE A 401 1555 1555 2.22 LINK OD2 ASP A 73 FE FE A 402 1555 1555 2.23 LINK NE2 HIS A 74 FE FE A 402 1555 1555 2.16 LINK NE2 HIS A 159 FE FE A 401 1555 1555 2.20 LINK OD2 ASP A 178 FE FE A 401 1555 1555 2.20 LINK OD2 ASP A 178 FE FE A 402 1555 1555 2.08 LINK NE2 HIS A 221 FE FE A 402 1555 1555 2.44 LINK FE FE A 401 O08 60Q A 403 1555 1555 2.38 LINK FE FE A 401 O HOH A 508 1555 1555 2.07 LINK FE FE A 402 O09 60Q A 403 1555 1555 2.14 LINK FE FE A 402 O HOH A 508 1555 1555 2.09 SITE 1 AC1 8 HIS A 69 HIS A 71 HIS A 74 HIS A 159 SITE 2 AC1 8 ASP A 178 FE A 402 60Q A 403 HOH A 508 SITE 1 AC2 7 ASP A 73 HIS A 74 ASP A 178 HIS A 221 SITE 2 AC2 7 FE A 401 60Q A 403 HOH A 508 SITE 1 AC3 13 HIS A 71 TYR A 72 ASP A 73 HIS A 159 SITE 2 AC3 13 ASP A 178 LEU A 193 PHE A 195 HIS A 221 SITE 3 AC3 13 LEU A 277 SER A 285 FE A 401 FE A 402 SITE 4 AC3 13 HOH A 508 CRYST1 60.880 60.880 146.212 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016426 0.009483 0.000000 0.00000 SCALE2 0.000000 0.018967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006839 0.00000