HEADER HYDROLASE 13-JAN-16 5HJ9 TITLE CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA ARGINASE IN COMPLEX WITH TITLE 2 INHIBITOR ABHPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 GENE: ARG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HAI,D.W.CHRISTIANSON REVDAT 5 27-SEP-23 5HJ9 1 LINK REVDAT 4 25-DEC-19 5HJ9 1 COMPND HETNAM REVDAT 3 18-APR-18 5HJ9 1 COMPND JRNL HETNAM REVDAT 2 13-SEP-17 5HJ9 1 REMARK REVDAT 1 13-APR-16 5HJ9 0 JRNL AUTH Y.HAI,D.W.CHRISTIANSON JRNL TITL CRYSTAL STRUCTURES OF LEISHMANIA MEXICANA ARGINASE COMPLEXED JRNL TITL 2 WITH ALPHA , ALPHA-DISUBSTITUTED BORONIC AMINO-ACID JRNL TITL 3 INHIBITORS. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 72 300 2016 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 27050264 JRNL DOI 10.1107/S2053230X16003630 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.3_1479 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 86034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 4338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 12.4187 - 3.4519 0.94 4062 215 0.0775 0.1238 REMARK 3 2 3.4519 - 2.7497 0.93 4020 308 0.1187 0.1240 REMARK 3 3 2.7497 - 2.4049 0.94 4056 271 0.1453 0.1528 REMARK 3 4 2.4049 - 2.1864 0.95 4109 202 0.1527 0.1541 REMARK 3 5 2.1864 - 2.0304 0.94 4047 257 0.1605 0.1721 REMARK 3 6 2.0304 - 1.9111 0.95 4156 213 0.1751 0.1756 REMARK 3 7 1.9111 - 1.8157 0.96 4113 190 0.1824 0.1755 REMARK 3 8 1.8157 - 1.7369 0.95 4121 200 0.1938 0.2018 REMARK 3 9 1.7369 - 1.6702 0.95 4115 221 0.1937 0.2260 REMARK 3 10 1.6702 - 1.6127 0.96 4151 178 0.1940 0.2260 REMARK 3 11 1.6127 - 1.5624 0.95 4132 208 0.2009 0.2047 REMARK 3 12 1.5624 - 1.5178 0.96 4129 153 0.2001 0.2127 REMARK 3 13 1.5178 - 1.4779 0.96 4171 188 0.2043 0.2406 REMARK 3 14 1.4779 - 1.4419 0.95 4042 227 0.2176 0.2284 REMARK 3 15 1.4419 - 1.4092 0.95 4118 233 0.2275 0.2372 REMARK 3 16 1.4092 - 1.3792 0.95 4124 228 0.2352 0.2528 REMARK 3 17 1.3792 - 1.3517 0.95 4083 213 0.2603 0.2773 REMARK 3 18 1.3517 - 1.3262 0.95 4063 233 0.3009 0.3085 REMARK 3 19 1.3262 - 1.3025 0.93 4036 206 0.3555 0.2996 REMARK 3 20 1.3025 - 1.2805 0.87 3756 185 0.3960 0.3645 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2541 REMARK 3 ANGLE : 1.302 3455 REMARK 3 CHIRALITY : 0.092 400 REMARK 3 PLANARITY : 0.005 440 REMARK 3 DIHEDRAL : 14.400 978 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.20200 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ITY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 25% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.54600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.71865 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.86667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 44.54600 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 25.71865 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.86667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 44.54600 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 25.71865 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.86667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.43729 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 75.73333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 51.43729 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 75.73333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 51.43729 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 75.73333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ARG A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 GLY A 10 REMARK 465 MET A 11 REMARK 465 ALA A 12 REMARK 465 HIS A 324 REMARK 465 THR A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 LYS A 328 REMARK 465 LEU A 329 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 84 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MN MN A 402 H14 X7A A 403 1.40 REMARK 500 HE22 GLN A 26 O HIS A 28 1.51 REMARK 500 HZ1 LYS A 221 O HOH A 506 1.59 REMARK 500 O HOH A 604 O HOH A 661 2.07 REMARK 500 O HOH A 624 O HOH A 632 2.08 REMARK 500 OE2 GLU A 57 O HOH A 501 2.09 REMARK 500 O HOH A 639 O HOH A 681 2.12 REMARK 500 O HOH A 534 O HOH A 684 2.13 REMARK 500 O PRO A 21 O HOH A 502 2.13 REMARK 500 OD2 ASP A 130 O HOH A 503 2.17 REMARK 500 O HOH A 533 O HOH A 590 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 215 O1 GOL A 404 3555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 191 3.90 -155.70 REMARK 500 LEU A 293 30.15 -79.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 700 DISTANCE = 6.37 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 409 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 ND1 REMARK 620 2 ASP A 137 OD2 92.5 REMARK 620 3 ASP A 141 OD2 86.8 83.3 REMARK 620 4 ASP A 243 OD2 101.0 89.7 169.8 REMARK 620 5 X7A A 403 O8 105.2 162.3 96.9 87.4 REMARK 620 6 X7A A 403 O9 176.3 90.2 91.0 81.5 72.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 137 OD1 REMARK 620 2 HIS A 139 ND1 98.3 REMARK 620 3 ASP A 243 OD2 87.8 169.8 REMARK 620 4 ASP A 245 OD1 79.8 100.9 88.2 REMARK 620 5 ASP A 245 OD2 132.4 91.7 90.2 52.6 REMARK 620 6 X7A A 403 O9 90.2 95.4 76.3 161.9 135.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X7A A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ITY RELATED DB: PDB REMARK 900 RELATED ID: 5HJA RELATED DB: PDB DBREF 5HJ9 A 13 329 UNP Q6TUJ5 Q6TUJ5_LEIME 13 329 SEQADV 5HJ9 MET A 0 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 ARG A 1 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 GLY A 2 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 SER A 3 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 HIS A 4 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 HIS A 5 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 HIS A 6 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 HIS A 7 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 HIS A 8 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 HIS A 9 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 GLY A 10 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 MET A 11 UNP Q6TUJ5 EXPRESSION TAG SEQADV 5HJ9 ALA A 12 UNP Q6TUJ5 EXPRESSION TAG SEQRES 1 A 330 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 330 LYS LYS MET SER ILE VAL LEU ALA PRO PHE SER GLY GLY SEQRES 3 A 330 GLN PRO HIS SER GLY VAL GLU LEU GLY PRO ASP TYR LEU SEQRES 4 A 330 LEU LYS GLN GLY LEU GLN GLN ASP MET GLU LYS LEU GLY SEQRES 5 A 330 TRP ASP THR ARG LEU GLU ARG VAL PHE ASP GLY LYS VAL SEQRES 6 A 330 VAL GLU ALA ARG LYS ALA SER ASP ASN GLY ASP ARG ILE SEQRES 7 A 330 GLY ARG VAL LYS ARG PRO ARG LEU THR ALA GLU CYS THR SEQRES 8 A 330 GLU LYS ILE TYR LYS CYS VAL ARG ARG VAL ALA GLU GLN SEQRES 9 A 330 GLY ARG PHE PRO LEU THR ILE GLY GLY ASP HIS SER ILE SEQRES 10 A 330 ALA LEU GLY THR VAL ALA GLY VAL LEU SER VAL HIS PRO SEQRES 11 A 330 ASP ALA GLY VAL ILE TRP VAL ASP ALA HIS ALA ASP ILE SEQRES 12 A 330 ASN THR MET SER GLY THR VAL SER GLY ASN LEU HIS GLY SEQRES 13 A 330 CYS PRO LEU SER ILE LEU LEU GLY LEU ASP ARG GLU ASN SEQRES 14 A 330 ILE PRO GLU CYS PHE SER TRP VAL PRO GLN VAL LEU LYS SEQRES 15 A 330 PRO ASN LYS ILE ALA TYR ILE GLY LEU ARG ALA VAL ASP SEQRES 16 A 330 ASP GLU GLU LYS LYS ILE LEU HIS ASP LEU ASN ILE ALA SEQRES 17 A 330 ALA PHE SER MET HIS HIS VAL ASP ARG TYR GLY ILE ASP SEQRES 18 A 330 LYS VAL VAL SER MET ALA ILE GLU ALA VAL SER PRO LYS SEQRES 19 A 330 GLY THR GLU PRO VAL MET VAL SER TYR ASP VAL ASP THR SEQRES 20 A 330 ILE ASP PRO LEU TYR VAL PRO ALA THR GLY THR PRO VAL SEQRES 21 A 330 ARG GLY GLY LEU SER PHE ARG GLU ALA LEU PHE LEU CYS SEQRES 22 A 330 GLU ARG ILE ALA GLU CYS GLY ARG LEU VAL ALA LEU ASP SEQRES 23 A 330 VAL VAL GLU CYS ASN PRO LEU LEU ALA ALA THR GLU SER SEQRES 24 A 330 HIS VAL ASN ASP THR ILE SER VAL GLY CYS ALA ILE ALA SEQRES 25 A 330 ARG CYS MET MET GLY GLU THR LEU LEU TYR THR PRO HIS SEQRES 26 A 330 THR SER SER LYS LEU HET MN A 401 1 HET MN A 402 1 HET X7A A 403 49 HET GOL A 404 14 HET SO4 A 405 5 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET PGE A 409 7 HET PGE A 410 10 HETNAM MN MANGANESE (II) ION HETNAM X7A [(5R)-5-AMINO-5-CARBOXY-7-(PIPERIDIN-1-YL) HETNAM 2 X7A HEPTYL](TRIHYDROXY)BORATE(1-) HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 2(MN 2+) FORMUL 4 X7A C13 H28 B N2 O5 1- FORMUL 5 GOL C3 H8 O3 FORMUL 6 SO4 O4 S 2- FORMUL 7 EDO 3(C2 H6 O2) FORMUL 10 PGE 2(C6 H14 O4) FORMUL 12 HOH *200(H2 O) HELIX 1 AA1 GLY A 30 GLU A 32 5 3 HELIX 2 AA2 LEU A 33 GLN A 41 1 9 HELIX 3 AA3 GLY A 42 LEU A 50 1 9 HELIX 4 AA4 ASP A 61 ASP A 72 1 12 HELIX 5 AA5 ARG A 82 GLN A 103 1 22 HELIX 6 AA6 ASP A 113 SER A 115 5 3 HELIX 7 AA7 ILE A 116 HIS A 128 1 13 HELIX 8 AA8 ASN A 152 GLY A 155 5 4 HELIX 9 AA9 CYS A 156 GLY A 163 1 8 HELIX 10 AB1 ASP A 165 ILE A 169 5 5 HELIX 11 AB2 PRO A 170 SER A 174 5 5 HELIX 12 AB3 LYS A 181 ASN A 183 5 3 HELIX 13 AB4 ASP A 194 LEU A 204 1 11 HELIX 14 AB5 MET A 211 GLY A 218 1 8 HELIX 15 AB6 GLY A 218 SER A 231 1 14 HELIX 16 AB7 ASP A 245 ILE A 247 5 3 HELIX 17 AB8 SER A 264 GLY A 279 1 16 HELIX 18 AB9 ASN A 290 ALA A 294 5 5 HELIX 19 AC1 THR A 296 MET A 315 1 20 SHEET 1 AA1 8 ASP A 53 ARG A 58 0 SHEET 2 AA1 8 LYS A 14 ALA A 20 1 N LEU A 19 O GLU A 57 SHEET 3 AA1 8 PHE A 106 GLY A 111 1 O PHE A 106 N LYS A 14 SHEET 4 AA1 8 LEU A 281 VAL A 287 1 O VAL A 286 N GLY A 111 SHEET 5 AA1 8 VAL A 238 ASP A 243 1 N VAL A 238 O VAL A 282 SHEET 6 AA1 8 GLY A 132 VAL A 136 1 N VAL A 136 O ASP A 243 SHEET 7 AA1 8 ILE A 185 LEU A 190 1 O ALA A 186 N TRP A 135 SHEET 8 AA1 8 ALA A 207 SER A 210 1 O ALA A 207 N TYR A 187 SHEET 1 AA2 2 ARG A 76 ILE A 77 0 SHEET 2 AA2 2 VAL A 80 LYS A 81 -1 O VAL A 80 N ILE A 77 LINK ND1 HIS A 114 MN MN A 401 1555 1555 2.30 LINK OD2 ASP A 137 MN MN A 401 1555 1555 2.06 LINK OD1 ASP A 137 MN MN A 402 1555 1555 2.07 LINK ND1 HIS A 139 MN MN A 402 1555 1555 2.34 LINK OD2 ASP A 141 MN MN A 401 1555 1555 2.17 LINK OD2 ASP A 243 MN MN A 401 1555 1555 2.16 LINK OD2 ASP A 243 MN MN A 402 1555 1555 2.48 LINK OD1 ASP A 245 MN MN A 402 1555 1555 2.65 LINK OD2 ASP A 245 MN MN A 402 1555 1555 2.15 LINK MN MN A 401 O8 X7A A 403 1555 1555 2.25 LINK MN MN A 401 O9 X7A A 403 1555 1555 2.14 LINK MN MN A 402 O9 X7A A 403 1555 1555 2.02 CISPEP 1 GLY A 111 GLY A 112 0 7.47 SITE 1 AC1 6 HIS A 114 ASP A 137 ASP A 141 ASP A 243 SITE 2 AC1 6 MN A 402 X7A A 403 SITE 1 AC2 6 ASP A 137 HIS A 139 ASP A 243 ASP A 245 SITE 2 AC2 6 MN A 401 X7A A 403 SITE 1 AC3 19 HIS A 114 ASP A 137 HIS A 139 ASP A 141 SITE 2 AC3 19 ASN A 143 SER A 150 HIS A 154 ASP A 194 SITE 3 AC3 19 ASP A 243 ASP A 245 THR A 257 GLU A 288 SITE 4 AC3 19 MN A 401 MN A 402 HOH A 540 HOH A 557 SITE 5 AC3 19 HOH A 578 HOH A 593 HOH A 594 SITE 1 AC4 6 MET A 211 HIS A 212 ASP A 215 PHE A 270 SITE 2 AC4 6 GLU A 273 HOH A 565 SITE 1 AC5 3 SER A 174 VAL A 176 PRO A 177 SITE 1 AC6 4 ALA A 309 ARG A 312 GLU A 317 HOH A 591 SITE 1 AC7 4 HIS A 212 GLU A 277 HOH A 572 HOH A 658 SITE 1 AC8 3 GLY A 218 HOH A 543 HOH A 617 SITE 1 AC9 9 ALA A 70 ASN A 73 LEU A 201 ASN A 205 SITE 2 AC9 9 ILE A 206 HOH A 504 HOH A 510 HOH A 511 SITE 3 AC9 9 HOH A 522 SITE 1 AD1 5 GLU A 196 LYS A 199 ILE A 200 ASP A 203 SITE 2 AD1 5 HOH A 548 CRYST1 89.092 89.092 113.600 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011224 0.006480 0.000000 0.00000 SCALE2 0.000000 0.012961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008803 0.00000