HEADER METAL BINDING PROTEIN 13-JAN-16 5HJF TITLE THE APO FORM OF DPS4 FROM NOSTOC PUNCTIFORME COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRITIN, DPS FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DNA BINDING PROTEIN FROM STARVED CELLS (DPS); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC PUNCTIFORME; SOURCE 3 ORGANISM_TAXID: 272131; SOURCE 4 GENE: NPUN_R5799; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS METAL BINDING PROTEIN, FERREDOXIN, OXIDATIVE STRESS EXPDTA X-RAY DIFFRACTION AUTHOR C.HOWE,V.K.MOPARTHI,K.PERSSON,K.STENSJO REVDAT 2 08-MAY-24 5HJF 1 REMARK REVDAT 1 25-JAN-17 5HJF 0 JRNL AUTH C.HOWE,V.K.MOPARTHI,K.PERSSON,K.STENSJO JRNL TITL ON THE TRAIL OF IRON AND ZINC BINDNING TO DPS4 FROM N. JRNL TITL 2 PUNCTIFORME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 115074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.040 REMARK 3 FREE R VALUE TEST SET COUNT : 4654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 4.9349 1.00 3777 140 0.0000 0.0000 REMARK 3 2 4.9349 - 3.9175 1.00 3660 201 0.0000 0.0000 REMARK 3 3 3.9175 - 3.4225 1.00 3733 149 0.1312 0.1504 REMARK 3 4 3.4225 - 3.1096 1.00 3710 140 0.1349 0.1475 REMARK 3 5 3.1096 - 2.8867 1.00 3716 147 0.1345 0.1485 REMARK 3 6 2.8867 - 2.7166 1.00 3691 166 0.1290 0.1452 REMARK 3 7 2.7166 - 2.5805 1.00 3626 214 0.1239 0.1515 REMARK 3 8 2.5805 - 2.4682 1.00 3621 232 0.1179 0.1352 REMARK 3 9 2.4682 - 2.3732 1.00 3598 222 0.1210 0.1472 REMARK 3 10 2.3732 - 2.2913 1.00 3868 0 0.1197 0.0000 REMARK 3 11 2.2913 - 2.2197 1.00 3553 277 0.1225 0.1543 REMARK 3 12 2.2197 - 2.1562 1.00 3870 0 0.1241 0.0000 REMARK 3 13 2.1562 - 2.0994 1.00 3523 306 0.1197 0.1392 REMARK 3 14 2.0994 - 2.0482 1.00 3825 0 0.1244 0.0000 REMARK 3 15 2.0482 - 2.0017 1.00 3509 332 0.1303 0.1467 REMARK 3 16 2.0017 - 1.9591 1.00 3789 0 0.1318 0.0000 REMARK 3 17 1.9591 - 1.9199 1.00 3499 358 0.1366 0.1689 REMARK 3 18 1.9199 - 1.8836 1.00 3867 0 0.1455 0.0000 REMARK 3 19 1.8836 - 1.8500 1.00 3423 404 0.1414 0.1694 REMARK 3 20 1.8500 - 1.8186 1.00 3776 0 0.1424 0.0000 REMARK 3 21 1.8186 - 1.7893 1.00 3875 0 0.1346 0.0000 REMARK 3 22 1.7893 - 1.7618 1.00 3394 417 0.1377 0.1658 REMARK 3 23 1.7618 - 1.7359 1.00 3874 0 0.1395 0.0000 REMARK 3 24 1.7359 - 1.7114 1.00 3333 456 0.1384 0.1720 REMARK 3 25 1.7114 - 1.6883 1.00 3865 0 0.1369 0.0000 REMARK 3 26 1.6883 - 1.6664 1.00 3790 0 0.1406 0.0000 REMARK 3 27 1.6664 - 1.6455 1.00 3327 492 0.1414 0.1801 REMARK 3 28 1.6455 - 1.6257 1.00 3837 0 0.1491 0.0000 REMARK 3 29 1.6257 - 1.6068 0.99 3818 0 0.1577 0.0000 REMARK 3 30 1.6068 - 1.5887 0.97 3673 1 0.1734 0.3244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5974 REMARK 3 ANGLE : 1.170 8121 REMARK 3 CHIRALITY : 0.046 899 REMARK 3 PLANARITY : 0.007 1072 REMARK 3 DIHEDRAL : 14.464 2179 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 2.6966 30.3545 -13.2288 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.1356 REMARK 3 T33: 0.1648 T12: 0.0117 REMARK 3 T13: 0.0210 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.4717 L22: 0.2853 REMARK 3 L33: 0.5819 L12: 0.1183 REMARK 3 L13: -0.3438 L23: -0.1335 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: 0.0465 S13: -0.0526 REMARK 3 S21: 0.0208 S22: -0.0114 S23: -0.0096 REMARK 3 S31: 0.0802 S32: -0.0214 S33: 0.0047 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -15.4724 40.8586 -20.8934 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.1649 REMARK 3 T33: 0.1556 T12: -0.0165 REMARK 3 T13: -0.0011 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.5410 L22: 0.4235 REMARK 3 L33: 0.8668 L12: 0.2715 REMARK 3 L13: -0.3601 L23: -0.2459 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0203 S13: -0.0727 REMARK 3 S21: -0.0013 S22: -0.0296 S23: 0.0196 REMARK 3 S31: 0.0670 S32: -0.0761 S33: 0.0429 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 24.5048 40.9603 8.8026 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: 0.1881 REMARK 3 T33: 0.1724 T12: 0.0426 REMARK 3 T13: 0.0038 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.4266 L22: 0.7935 REMARK 3 L33: 0.4836 L12: 0.2134 REMARK 3 L13: 0.1421 L23: 0.2526 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0100 S13: -0.0340 REMARK 3 S21: 0.0258 S22: -0.0118 S23: -0.0215 REMARK 3 S31: 0.0943 S32: 0.1078 S33: 0.0217 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 10.7831 42.5789 25.3562 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.1327 REMARK 3 T33: 0.1248 T12: 0.0150 REMARK 3 T13: 0.0046 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.4314 L22: 0.5057 REMARK 3 L33: 0.5401 L12: 0.2419 REMARK 3 L13: 0.2063 L23: 0.1512 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: -0.0159 S13: -0.0282 REMARK 3 S21: 0.0588 S22: 0.0122 S23: -0.0049 REMARK 3 S31: 0.0704 S32: 0.0448 S33: 0.0263 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.14 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115112 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 48.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: LONG ROD-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% SOKALAN HP 66, 0.1 M HEPES PH 7.0 REMARK 280 AND 0.2 M NAOAC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.12500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.12500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.12500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 66020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -309.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 50.94200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 88.23413 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -50.94200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 88.23413 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 236 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 284 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 293 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 355 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 312 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 PRO C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 74 O HOH A 206 1.59 REMARK 500 HE21 GLN D 74 O HOH D 204 1.60 REMARK 500 NH1 ARG D 23 O HOH D 201 2.12 REMARK 500 O HOH C 212 O HOH C 295 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 115 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 115 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 15 -165.37 -120.28 REMARK 500 ALA A 93 -9.22 -146.49 REMARK 500 PHE A 178 10.25 -151.34 REMARK 500 GLN B 5 -95.81 -174.90 REMARK 500 TYR B 15 -166.10 -110.97 REMARK 500 ALA B 93 -9.02 -148.40 REMARK 500 PHE B 178 11.49 -153.19 REMARK 500 GLN C 5 -90.88 -175.54 REMARK 500 TYR C 15 -161.85 -111.02 REMARK 500 ALA C 93 -8.64 -146.85 REMARK 500 PHE C 178 11.51 -151.16 REMARK 500 GLN D 5 112.28 60.92 REMARK 500 TYR D 15 -169.11 -112.21 REMARK 500 ALA D 93 -9.30 -144.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 357 DISTANCE = 5.98 ANGSTROMS DBREF 5HJF A 1 182 UNP B2J981 B2J981_NOSP7 1 182 DBREF 5HJF B 1 182 UNP B2J981 B2J981_NOSP7 1 182 DBREF 5HJF C 1 182 UNP B2J981 B2J981_NOSP7 1 182 DBREF 5HJF D 1 182 UNP B2J981 B2J981_NOSP7 1 182 SEQADV 5HJF HIS A -2 UNP B2J981 EXPRESSION TAG SEQADV 5HJF HIS A -1 UNP B2J981 EXPRESSION TAG SEQADV 5HJF PRO A 0 UNP B2J981 EXPRESSION TAG SEQADV 5HJF ALA A 2 UNP B2J981 SER 2 ENGINEERED MUTATION SEQADV 5HJF HIS B -2 UNP B2J981 EXPRESSION TAG SEQADV 5HJF HIS B -1 UNP B2J981 EXPRESSION TAG SEQADV 5HJF PRO B 0 UNP B2J981 EXPRESSION TAG SEQADV 5HJF ALA B 2 UNP B2J981 SER 2 ENGINEERED MUTATION SEQADV 5HJF HIS C -2 UNP B2J981 EXPRESSION TAG SEQADV 5HJF HIS C -1 UNP B2J981 EXPRESSION TAG SEQADV 5HJF PRO C 0 UNP B2J981 EXPRESSION TAG SEQADV 5HJF ALA C 2 UNP B2J981 SER 2 ENGINEERED MUTATION SEQADV 5HJF HIS D -2 UNP B2J981 EXPRESSION TAG SEQADV 5HJF HIS D -1 UNP B2J981 EXPRESSION TAG SEQADV 5HJF PRO D 0 UNP B2J981 EXPRESSION TAG SEQADV 5HJF ALA D 2 UNP B2J981 SER 2 ENGINEERED MUTATION SEQRES 1 A 185 HIS HIS PRO MET ALA GLU THR GLN THR LEU LEU ARG ASN SEQRES 2 A 185 PHE GLY ASN VAL TYR ASP ASN PRO VAL LEU LEU ASP ARG SEQRES 3 A 185 SER VAL THR ALA PRO VAL THR GLU GLY PHE ASN VAL VAL SEQRES 4 A 185 LEU ALA SER PHE GLN ALA LEU TYR LEU GLN TYR GLN LYS SEQRES 5 A 185 HIS HIS PHE VAL VAL GLU GLY SER GLU PHE TYR SER LEU SEQRES 6 A 185 HIS GLU PHE PHE ASN GLU SER TYR ASN GLN VAL GLN ASP SEQRES 7 A 185 HIS ILE HIS GLU ILE GLY GLU ARG LEU ASP GLY LEU GLY SEQRES 8 A 185 GLY VAL PRO VAL ALA THR PHE SER LYS LEU ALA GLU LEU SEQRES 9 A 185 THR CYS PHE GLU GLN GLU SER GLU GLY VAL TYR SER SER SEQRES 10 A 185 ARG GLN MET VAL GLU ASN ASP LEU ALA ALA GLU GLN ALA SEQRES 11 A 185 ILE ILE GLY VAL ILE ARG ARG GLN ALA ALA GLN ALA GLU SEQRES 12 A 185 SER LEU GLY ASP ARG GLY THR ARG TYR LEU TYR GLU LYS SEQRES 13 A 185 ILE LEU LEU LYS THR GLU GLU ARG ALA TYR HIS LEU SER SEQRES 14 A 185 HIS PHE LEU ALA LYS ASP SER LEU THR LEU GLY PHE VAL SEQRES 15 A 185 GLN ALA ALA SEQRES 1 B 185 HIS HIS PRO MET ALA GLU THR GLN THR LEU LEU ARG ASN SEQRES 2 B 185 PHE GLY ASN VAL TYR ASP ASN PRO VAL LEU LEU ASP ARG SEQRES 3 B 185 SER VAL THR ALA PRO VAL THR GLU GLY PHE ASN VAL VAL SEQRES 4 B 185 LEU ALA SER PHE GLN ALA LEU TYR LEU GLN TYR GLN LYS SEQRES 5 B 185 HIS HIS PHE VAL VAL GLU GLY SER GLU PHE TYR SER LEU SEQRES 6 B 185 HIS GLU PHE PHE ASN GLU SER TYR ASN GLN VAL GLN ASP SEQRES 7 B 185 HIS ILE HIS GLU ILE GLY GLU ARG LEU ASP GLY LEU GLY SEQRES 8 B 185 GLY VAL PRO VAL ALA THR PHE SER LYS LEU ALA GLU LEU SEQRES 9 B 185 THR CYS PHE GLU GLN GLU SER GLU GLY VAL TYR SER SER SEQRES 10 B 185 ARG GLN MET VAL GLU ASN ASP LEU ALA ALA GLU GLN ALA SEQRES 11 B 185 ILE ILE GLY VAL ILE ARG ARG GLN ALA ALA GLN ALA GLU SEQRES 12 B 185 SER LEU GLY ASP ARG GLY THR ARG TYR LEU TYR GLU LYS SEQRES 13 B 185 ILE LEU LEU LYS THR GLU GLU ARG ALA TYR HIS LEU SER SEQRES 14 B 185 HIS PHE LEU ALA LYS ASP SER LEU THR LEU GLY PHE VAL SEQRES 15 B 185 GLN ALA ALA SEQRES 1 C 185 HIS HIS PRO MET ALA GLU THR GLN THR LEU LEU ARG ASN SEQRES 2 C 185 PHE GLY ASN VAL TYR ASP ASN PRO VAL LEU LEU ASP ARG SEQRES 3 C 185 SER VAL THR ALA PRO VAL THR GLU GLY PHE ASN VAL VAL SEQRES 4 C 185 LEU ALA SER PHE GLN ALA LEU TYR LEU GLN TYR GLN LYS SEQRES 5 C 185 HIS HIS PHE VAL VAL GLU GLY SER GLU PHE TYR SER LEU SEQRES 6 C 185 HIS GLU PHE PHE ASN GLU SER TYR ASN GLN VAL GLN ASP SEQRES 7 C 185 HIS ILE HIS GLU ILE GLY GLU ARG LEU ASP GLY LEU GLY SEQRES 8 C 185 GLY VAL PRO VAL ALA THR PHE SER LYS LEU ALA GLU LEU SEQRES 9 C 185 THR CYS PHE GLU GLN GLU SER GLU GLY VAL TYR SER SER SEQRES 10 C 185 ARG GLN MET VAL GLU ASN ASP LEU ALA ALA GLU GLN ALA SEQRES 11 C 185 ILE ILE GLY VAL ILE ARG ARG GLN ALA ALA GLN ALA GLU SEQRES 12 C 185 SER LEU GLY ASP ARG GLY THR ARG TYR LEU TYR GLU LYS SEQRES 13 C 185 ILE LEU LEU LYS THR GLU GLU ARG ALA TYR HIS LEU SER SEQRES 14 C 185 HIS PHE LEU ALA LYS ASP SER LEU THR LEU GLY PHE VAL SEQRES 15 C 185 GLN ALA ALA SEQRES 1 D 185 HIS HIS PRO MET ALA GLU THR GLN THR LEU LEU ARG ASN SEQRES 2 D 185 PHE GLY ASN VAL TYR ASP ASN PRO VAL LEU LEU ASP ARG SEQRES 3 D 185 SER VAL THR ALA PRO VAL THR GLU GLY PHE ASN VAL VAL SEQRES 4 D 185 LEU ALA SER PHE GLN ALA LEU TYR LEU GLN TYR GLN LYS SEQRES 5 D 185 HIS HIS PHE VAL VAL GLU GLY SER GLU PHE TYR SER LEU SEQRES 6 D 185 HIS GLU PHE PHE ASN GLU SER TYR ASN GLN VAL GLN ASP SEQRES 7 D 185 HIS ILE HIS GLU ILE GLY GLU ARG LEU ASP GLY LEU GLY SEQRES 8 D 185 GLY VAL PRO VAL ALA THR PHE SER LYS LEU ALA GLU LEU SEQRES 9 D 185 THR CYS PHE GLU GLN GLU SER GLU GLY VAL TYR SER SER SEQRES 10 D 185 ARG GLN MET VAL GLU ASN ASP LEU ALA ALA GLU GLN ALA SEQRES 11 D 185 ILE ILE GLY VAL ILE ARG ARG GLN ALA ALA GLN ALA GLU SEQRES 12 D 185 SER LEU GLY ASP ARG GLY THR ARG TYR LEU TYR GLU LYS SEQRES 13 D 185 ILE LEU LEU LYS THR GLU GLU ARG ALA TYR HIS LEU SER SEQRES 14 D 185 HIS PHE LEU ALA LYS ASP SER LEU THR LEU GLY PHE VAL SEQRES 15 D 185 GLN ALA ALA FORMUL 5 HOH *683(H2 O) HELIX 1 AA1 ASP A 22 VAL A 54 1 33 HELIX 2 AA2 GLU A 58 LEU A 87 1 30 HELIX 3 AA3 THR A 94 THR A 102 1 9 HELIX 4 AA4 SER A 113 GLY A 143 1 31 HELIX 5 AA5 ASP A 144 ALA A 170 1 27 HELIX 6 AA6 SER A 173 PHE A 178 5 6 HELIX 7 AA7 ASP B 22 VAL B 54 1 33 HELIX 8 AA8 GLU B 58 LEU B 87 1 30 HELIX 9 AA9 THR B 94 THR B 102 1 9 HELIX 10 AB1 SER B 113 GLY B 143 1 31 HELIX 11 AB2 ASP B 144 ALA B 170 1 27 HELIX 12 AB3 SER B 173 PHE B 178 5 6 HELIX 13 AB4 ASP C 22 VAL C 54 1 33 HELIX 14 AB5 GLU C 58 LEU C 87 1 30 HELIX 15 AB6 THR C 94 THR C 102 1 9 HELIX 16 AB7 SER C 113 GLY C 143 1 31 HELIX 17 AB8 ASP C 144 ALA C 170 1 27 HELIX 18 AB9 SER C 173 PHE C 178 5 6 HELIX 19 AC1 ASP D 22 VAL D 54 1 33 HELIX 20 AC2 GLU D 58 LEU D 87 1 30 HELIX 21 AC3 THR D 94 THR D 102 1 9 HELIX 22 AC4 SER D 113 GLY D 143 1 31 HELIX 23 AC5 ASP D 144 ALA D 170 1 27 HELIX 24 AC6 SER D 173 PHE D 178 5 6 CRYST1 101.884 101.884 146.250 90.00 90.00 120.00 P 63 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009815 0.005667 0.000000 0.00000 SCALE2 0.000000 0.011333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006838 0.00000