data_5HNQ # _entry.id 5HNQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5HNQ pdb_00005hnq 10.2210/pdb5hnq/pdb WWPDB D_1000217388 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5HNJ _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5HNQ _pdbx_database_status.recvd_initial_deposition_date 2016-01-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Luo, Z.' 1 'Sheng, J.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 4968 _citation.page_last 4977 _citation.title 'Base pairing and structural insights into the 5-formylcytosine in RNA duplex.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkw235 _citation.pdbx_database_id_PubMed 27079978 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, R.' 1 ? primary 'Luo, Z.' 2 ? primary 'He, K.' 3 ? primary 'Delaney, M.O.' 4 ? primary 'Chen, D.' 5 ? primary 'Sheng, J.' 6 ? # _cell.entry_id 5HNQ _cell.length_a 138.901 _cell.length_b 44.323 _cell.length_c 50.586 _cell.angle_alpha 90.00 _cell.angle_beta 102.76 _cell.angle_gamma 90.00 _cell.Z_PDB 52 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HNQ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '5fC modified RNA' 2554.571 13 ? ? ? ? 2 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GUA(RSQ)GUAC' _entity_poly.pdbx_seq_one_letter_code_can GUAXGUAC _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K,L,M _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 A n 1 4 RSQ n 1 5 G n 1 6 U n 1 7 A n 1 8 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.db_code 5HNQ _struct_ref.db_name PDB _struct_ref.details ? _struct_ref.entity_id 1 _struct_ref.id 1 _struct_ref.seq_align ? _struct_ref.seq_dif ? _struct_ref.pdbx_db_accession 5HNQ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_align_end ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5HNQ A 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 2 1 5HNQ B 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 3 1 5HNQ C 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 4 1 5HNQ D 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 5 1 5HNQ E 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 6 1 5HNQ F 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 7 1 5HNQ G 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 8 1 5HNQ H 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 9 1 5HNQ I 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 10 1 5HNQ J 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 11 1 5HNQ K 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 12 1 5HNQ L 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 13 1 5HNQ M 1 ? 8 ? 5HNQ 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 RSQ 'RNA linking' n ;5-formylcytidine 5'-(dihydrogen phosphate) ; ? 'C10 H14 N3 O9 P' 351.207 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5HNQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10% MPD, 40 mM Na cacodylate (pH 6.0), 12 mM Spermine tetrahydrochloride, 80 mM NaCl, 12 mM KCl, 20mM MgCl2' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-10-28 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5HNQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 50.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12285 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.7 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.70 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5HNQ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11304 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.72 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.69 _refine.ls_R_factor_obs 0.22358 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22144 _refine.ls_R_factor_R_free 0.26109 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 619 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 103.509 _refine.aniso_B[1][1] 23.51 _refine.aniso_B[2][2] 28.82 _refine.aniso_B[3][3] -52.33 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -4.45 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 5FC1 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.108 _refine.pdbx_overall_ESU_R_Free 0.060 _refine.overall_SU_ML 0.213 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 20.540 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2197 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 2203 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 28.72 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.013 ? 2444 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.408 1.469 ? 3679 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.145 0.200 ? 429 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.016 0.020 ? 1079 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 9.822 12.889 ? 2443 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined 14.835 57.700 ? 11209 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.number_reflns_R_work 829 _refine_ls_shell.R_factor_R_work 0.383 _refine_ls_shell.percent_reflns_obs 98.96 _refine_ls_shell.R_factor_R_free 0.458 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5HNQ _struct.title 'Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5HNQ _struct_keywords.text 'RNA, 5-formylcytosine' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 2 ? O N N 2 ? P N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 3 "O3'" ? ? ? 1_555 A RSQ 4 P ? ? A A 3 A RSQ 4 1_555 ? ? ? ? ? ? ? 1.485 ? ? covale2 covale one ? A RSQ 4 "O3'" ? ? ? 1_555 A G 5 P ? ? A RSQ 4 A G 5 1_555 ? ? ? ? ? ? ? 1.497 ? ? covale3 covale both ? B A 3 "O3'" ? ? ? 1_555 B RSQ 4 P ? ? B A 3 B RSQ 4 1_555 ? ? ? ? ? ? ? 1.457 ? ? covale4 covale one ? B RSQ 4 "O3'" ? ? ? 1_555 B G 5 P ? ? B RSQ 4 B G 5 1_555 ? ? ? ? ? ? ? 1.466 ? ? covale5 covale both ? C A 3 "O3'" ? ? ? 1_555 C RSQ 4 P ? ? C A 3 C RSQ 4 1_555 ? ? ? ? ? ? ? 1.507 ? ? covale6 covale one ? C RSQ 4 "O3'" ? ? ? 1_555 C G 5 P ? ? C RSQ 4 C G 5 1_555 ? ? ? ? ? ? ? 1.505 ? ? covale7 covale both ? D A 3 "O3'" ? ? ? 1_555 D RSQ 4 P ? ? D A 3 D RSQ 4 1_555 ? ? ? ? ? ? ? 1.464 ? ? covale8 covale one ? D RSQ 4 "O3'" ? ? ? 1_555 D G 5 P ? ? D RSQ 4 D G 5 1_555 ? ? ? ? ? ? ? 1.505 ? ? covale9 covale both ? E A 3 "O3'" ? ? ? 1_555 E RSQ 4 P ? ? E A 3 E RSQ 4 1_555 ? ? ? ? ? ? ? 1.486 ? ? covale10 covale one ? E RSQ 4 "O3'" ? ? ? 1_555 E G 5 P ? ? E RSQ 4 E G 5 1_555 ? ? ? ? ? ? ? 1.500 ? ? covale11 covale both ? F A 3 "O3'" ? ? ? 1_555 F RSQ 4 P ? ? F A 3 F RSQ 4 1_555 ? ? ? ? ? ? ? 1.469 ? ? covale12 covale one ? F RSQ 4 "O3'" ? ? ? 1_555 F G 5 P ? ? F RSQ 4 F G 5 1_555 ? ? ? ? ? ? ? 1.450 ? ? covale13 covale both ? G A 3 "O3'" ? ? ? 1_555 G RSQ 4 P ? ? G A 3 G RSQ 4 1_555 ? ? ? ? ? ? ? 1.499 ? ? covale14 covale one ? G RSQ 4 "O3'" ? ? ? 1_555 G G 5 P ? ? G RSQ 4 G G 5 1_555 ? ? ? ? ? ? ? 1.503 ? ? covale15 covale both ? H A 3 "O3'" ? ? ? 1_555 H RSQ 4 P ? ? H A 3 H RSQ 4 1_555 ? ? ? ? ? ? ? 1.506 ? ? covale16 covale one ? H RSQ 4 "O3'" ? ? ? 1_555 H G 5 P ? ? H RSQ 4 H G 5 1_555 ? ? ? ? ? ? ? 1.498 ? ? covale17 covale both ? I A 3 "O3'" ? ? ? 1_555 I RSQ 4 P ? ? I A 3 I RSQ 4 1_555 ? ? ? ? ? ? ? 1.497 ? ? covale18 covale one ? I RSQ 4 "O3'" ? ? ? 1_555 I G 5 P ? ? I RSQ 4 I G 5 1_555 ? ? ? ? ? ? ? 1.487 ? ? covale19 covale both ? J A 3 "O3'" ? ? ? 1_555 J RSQ 4 P ? ? J A 3 J RSQ 4 1_555 ? ? ? ? ? ? ? 1.517 ? ? covale20 covale one ? J RSQ 4 "O3'" ? ? ? 1_555 J G 5 P ? ? J RSQ 4 J G 5 1_555 ? ? ? ? ? ? ? 1.482 ? ? covale21 covale both ? K A 3 "O3'" ? ? ? 1_555 K RSQ 4 P ? ? K A 3 K RSQ 4 1_555 ? ? ? ? ? ? ? 1.516 ? ? covale22 covale one ? K RSQ 4 "O3'" ? ? ? 1_555 K G 5 P ? ? K RSQ 4 K G 5 1_555 ? ? ? ? ? ? ? 1.520 ? ? covale23 covale both ? L A 3 "O3'" ? ? ? 1_555 L RSQ 4 P ? ? L A 3 L RSQ 4 1_555 ? ? ? ? ? ? ? 1.524 ? ? covale24 covale one ? L RSQ 4 "O3'" ? ? ? 1_555 L G 5 P ? ? L RSQ 4 L G 5 1_555 ? ? ? ? ? ? ? 1.474 ? ? covale25 covale both ? M A 3 "O3'" ? ? ? 1_555 M RSQ 4 P ? ? M A 3 M RSQ 4 1_555 ? ? ? ? ? ? ? 1.490 ? ? covale26 covale one ? M RSQ 4 "O3'" ? ? ? 1_555 M G 5 P ? ? M RSQ 4 M G 5 1_555 ? ? ? ? ? ? ? 1.497 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 7 N1 ? ? A U 2 B A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 7 N6 ? ? A U 2 B A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 3 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 3 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A RSQ 4 N3 ? ? ? 1_555 B G 5 N1 ? ? A RSQ 4 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A RSQ 4 N4 ? ? ? 1_555 B G 5 O6 ? ? A RSQ 4 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A RSQ 4 O2 ? ? ? 1_555 B G 5 N2 ? ? A RSQ 4 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 B RSQ 4 N3 ? ? A G 5 B RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 B RSQ 4 O2 ? ? A G 5 B RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 B RSQ 4 N4 ? ? A G 5 B RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 6 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 6 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 B U 2 N3 ? ? A A 7 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 B U 2 O4 ? ? A A 7 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 8 N3 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 8 O2 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 8 N4 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C U 2 N3 ? ? ? 1_555 D A 7 N1 ? ? C U 2 D A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C U 2 O4 ? ? ? 1_555 D A 7 N6 ? ? C U 2 D A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C A 3 N1 ? ? ? 1_555 D U 6 N3 ? ? C A 3 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C A 3 N6 ? ? ? 1_555 D U 6 O4 ? ? C A 3 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C RSQ 4 N3 ? ? ? 1_555 D G 5 N1 ? ? C RSQ 4 D G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C RSQ 4 N4 ? ? ? 1_555 D G 5 O6 ? ? C RSQ 4 D G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C RSQ 4 O2 ? ? ? 1_555 D G 5 N2 ? ? C RSQ 4 D G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 5 N1 ? ? ? 1_555 D RSQ 4 N3 ? ? C G 5 D RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 5 N2 ? ? ? 1_555 D RSQ 4 O2 ? ? C G 5 D RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C G 5 O6 ? ? ? 1_555 D RSQ 4 N4 ? ? C G 5 D RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C U 6 N3 ? ? ? 1_555 D A 3 N1 ? ? C U 6 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C U 6 O4 ? ? ? 1_555 D A 3 N6 ? ? C U 6 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C A 7 N1 ? ? ? 1_555 D U 2 N3 ? ? C A 7 D U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C A 7 N6 ? ? ? 1_555 D U 2 O4 ? ? C A 7 D U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C 8 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C C 8 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C C 8 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E G 1 N1 ? ? ? 1_555 F C 8 O2 ? ? E G 1 F C 8 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog42 hydrog ? ? E U 2 N3 ? ? ? 1_555 F A 7 N1 ? ? E U 2 F A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E U 2 O4 ? ? ? 1_555 F A 7 N6 ? ? E U 2 F A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E A 3 N1 ? ? ? 1_555 F U 6 N3 ? ? E A 3 F U 6 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog45 hydrog ? ? E RSQ 4 N3 ? ? ? 1_555 F G 5 N1 ? ? E RSQ 4 F G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E RSQ 4 N4 ? ? ? 1_555 F G 5 O6 ? ? E RSQ 4 F G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E RSQ 4 O2 ? ? ? 1_555 F G 5 N2 ? ? E RSQ 4 F G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E G 5 N1 ? ? ? 1_555 F RSQ 4 N3 ? ? E G 5 F RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E G 5 N2 ? ? ? 1_555 F RSQ 4 O2 ? ? E G 5 F RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E G 5 O6 ? ? ? 1_555 F RSQ 4 N4 ? ? E G 5 F RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E U 6 N3 ? ? ? 1_555 F A 3 N1 ? ? E U 6 F A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E U 6 O4 ? ? ? 1_555 F A 3 N6 ? ? E U 6 F A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E A 7 N1 ? ? ? 1_555 F U 2 N3 ? ? E A 7 F U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E A 7 N6 ? ? ? 1_555 F U 2 O4 ? ? E A 7 F U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E C 8 N3 ? ? ? 1_555 F G 1 N1 ? ? E C 8 F G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E C 8 N4 ? ? ? 1_555 F G 1 O6 ? ? E C 8 F G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E C 8 O2 ? ? ? 1_555 F G 1 N2 ? ? E C 8 F G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? G U 2 N3 ? ? ? 1_555 H A 7 N1 ? ? G U 2 H A 7 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog59 hydrog ? ? G A 3 N1 ? ? ? 1_555 H U 6 N3 ? ? G A 3 H U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? G A 3 N6 ? ? ? 1_555 H U 6 O4 ? ? G A 3 H U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? G RSQ 4 N3 ? ? ? 1_555 H G 5 N1 ? ? G RSQ 4 H G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? G RSQ 4 N4 ? ? ? 1_555 H G 5 O6 ? ? G RSQ 4 H G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? G RSQ 4 O2 ? ? ? 1_555 H G 5 N2 ? ? G RSQ 4 H G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? G G 5 N1 ? ? ? 1_555 H RSQ 4 N3 ? ? G G 5 H RSQ 4 1_555 ? ? ? ? ? ? 'G-RSQ MISPAIR' ? ? ? hydrog65 hydrog ? ? G U 6 N3 ? ? ? 1_555 H A 3 N1 ? ? G U 6 H A 3 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog66 hydrog ? ? G A 7 N1 ? ? ? 1_555 H U 2 N3 ? ? G A 7 H U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? G A 7 N6 ? ? ? 1_555 H U 2 O4 ? ? G A 7 H U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? G C 8 O2 ? ? ? 1_555 H G 1 N2 ? ? G C 8 H G 1 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog69 hydrog ? ? I G 1 N1 ? ? ? 1_555 J C 8 N3 ? ? I G 1 J C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? I G 1 N2 ? ? ? 1_555 J C 8 O2 ? ? I G 1 J C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? I G 1 O6 ? ? ? 1_555 J C 8 N4 ? ? I G 1 J C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? I U 2 N3 ? ? ? 1_555 J A 7 N1 ? ? I U 2 J A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? I U 2 O4 ? ? ? 1_555 J A 7 N6 ? ? I U 2 J A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? I A 3 N1 ? ? ? 1_555 J U 6 N3 ? ? I A 3 J U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? I A 3 N6 ? ? ? 1_555 J U 6 O4 ? ? I A 3 J U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? I RSQ 4 O2 ? ? ? 1_555 J G 5 N2 ? ? I RSQ 4 J G 5 1_555 ? ? ? ? ? ? 'RSQ-G MISPAIR' ? ? ? hydrog77 hydrog ? ? I G 5 N1 ? ? ? 1_555 J RSQ 4 N3 ? ? I G 5 J RSQ 4 1_555 ? ? ? ? ? ? 'G-RSQ MISPAIR' ? ? ? hydrog78 hydrog ? ? I U 6 N3 ? ? ? 1_555 J A 3 N1 ? ? I U 6 J A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? I U 6 O4 ? ? ? 1_555 J A 3 N6 ? ? I U 6 J A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? I A 7 N1 ? ? ? 1_555 J U 2 N3 ? ? I A 7 J U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? I A 7 N6 ? ? ? 1_555 J U 2 O4 ? ? I A 7 J U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? I C 8 N3 ? ? ? 1_555 J G 1 N1 ? ? I C 8 J G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? I C 8 N4 ? ? ? 1_555 J G 1 O6 ? ? I C 8 J G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? I C 8 O2 ? ? ? 1_555 J G 1 N2 ? ? I C 8 J G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? K G 1 N1 ? ? ? 1_555 L C 8 N3 ? ? K G 1 L C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? K G 1 N2 ? ? ? 1_555 L C 8 O2 ? ? K G 1 L C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? K G 1 O6 ? ? ? 1_555 L C 8 N4 ? ? K G 1 L C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? K U 2 N3 ? ? ? 1_555 L A 7 N1 ? ? K U 2 L A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? K U 2 O4 ? ? ? 1_555 L A 7 N6 ? ? K U 2 L A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? K A 3 N1 ? ? ? 1_555 L U 6 N3 ? ? K A 3 L U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? K A 3 N6 ? ? ? 1_555 L U 6 O4 ? ? K A 3 L U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? K RSQ 4 N3 ? ? ? 1_555 L G 5 N1 ? ? K RSQ 4 L G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? K RSQ 4 N4 ? ? ? 1_555 L G 5 O6 ? ? K RSQ 4 L G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? K RSQ 4 O2 ? ? ? 1_555 L G 5 N2 ? ? K RSQ 4 L G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? K G 5 N1 ? ? ? 1_555 L RSQ 4 N3 ? ? K G 5 L RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? K G 5 N2 ? ? ? 1_555 L RSQ 4 O2 ? ? K G 5 L RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? K G 5 O6 ? ? ? 1_555 L RSQ 4 N4 ? ? K G 5 L RSQ 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? K U 6 N3 ? ? ? 1_555 L A 3 N1 ? ? K U 6 L A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? K U 6 O4 ? ? ? 1_555 L A 3 N6 ? ? K U 6 L A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? K A 7 N1 ? ? ? 1_555 L U 2 N3 ? ? K A 7 L U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? K A 7 N6 ? ? ? 1_555 L U 2 O4 ? ? K A 7 L U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? K C 8 N3 ? ? ? 1_555 L G 1 N1 ? ? K C 8 L G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? K C 8 N4 ? ? ? 1_555 L G 1 O6 ? ? K C 8 L G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? K C 8 O2 ? ? ? 1_555 L G 1 N2 ? ? K C 8 L G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? M G 1 N1 ? ? ? 1_555 M C 8 O2 ? ? M G 1 M C 8 2_658 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog106 hydrog ? ? M U 2 N3 ? ? ? 1_555 M A 7 N1 ? ? M U 2 M A 7 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? M U 2 O4 ? ? ? 1_555 M A 7 N6 ? ? M U 2 M A 7 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? M A 3 N1 ? ? ? 1_555 M U 6 N3 ? ? M A 3 M U 6 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? M A 3 N6 ? ? ? 1_555 M U 6 O4 ? ? M A 3 M U 6 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? M RSQ 4 N3 ? ? ? 1_555 M G 5 N1 ? ? M RSQ 4 M G 5 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? M RSQ 4 N4 ? ? ? 1_555 M G 5 O6 ? ? M RSQ 4 M G 5 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? M RSQ 4 O2 ? ? ? 1_555 M G 5 N2 ? ? M RSQ 4 M G 5 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? M G 5 N1 ? ? ? 1_555 M RSQ 4 N3 ? ? M G 5 M RSQ 4 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? M G 5 N2 ? ? ? 1_555 M RSQ 4 O2 ? ? M G 5 M RSQ 4 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? M G 5 O6 ? ? ? 1_555 M RSQ 4 N4 ? ? M G 5 M RSQ 4 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? M U 6 N3 ? ? ? 1_555 M A 3 N1 ? ? M U 6 M A 3 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? M U 6 O4 ? ? ? 1_555 M A 3 N6 ? ? M U 6 M A 3 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? M A 7 N1 ? ? ? 1_555 M U 2 N3 ? ? M A 7 M U 2 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? M A 7 N6 ? ? ? 1_555 M U 2 O4 ? ? M A 7 M U 2 2_658 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? M C 8 N4 ? ? ? 1_555 M G 1 O6 ? ? M C 8 M G 1 2_658 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog121 hydrog ? ? M C 8 O2 ? ? ? 1_555 M G 1 N1 ? ? M C 8 M G 1 2_658 ? ? ? ? ? ? 'C-G PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 5HNQ _atom_sites.fract_transf_matrix[1][1] 0.007199 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001631 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022562 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020269 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 U 2 2 2 U U A . n A 1 3 A 3 3 3 A A A . n A 1 4 RSQ 4 4 4 RSQ RSQ A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 U 2 2 2 U U B . n B 1 3 A 3 3 3 A A B . n B 1 4 RSQ 4 4 4 RSQ RSQ B . n B 1 5 G 5 5 5 G G B . n B 1 6 U 6 6 6 U U B . n B 1 7 A 7 7 7 A A B . n B 1 8 C 8 8 8 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 U 2 2 2 U U C . n C 1 3 A 3 3 3 A A C . n C 1 4 RSQ 4 4 4 RSQ RSQ C . n C 1 5 G 5 5 5 G G C . n C 1 6 U 6 6 6 U U C . n C 1 7 A 7 7 7 A A C . n C 1 8 C 8 8 8 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 U 2 2 2 U U D . n D 1 3 A 3 3 3 A A D . n D 1 4 RSQ 4 4 4 RSQ RSQ D . n D 1 5 G 5 5 5 G G D . n D 1 6 U 6 6 6 U U D . n D 1 7 A 7 7 7 A A D . n D 1 8 C 8 8 8 C C D . n E 1 1 G 1 1 1 G G E . n E 1 2 U 2 2 2 U U E . n E 1 3 A 3 3 3 A A E . n E 1 4 RSQ 4 4 4 RSQ RSQ E . n E 1 5 G 5 5 5 G G E . n E 1 6 U 6 6 6 U U E . n E 1 7 A 7 7 7 A A E . n E 1 8 C 8 8 8 C C E . n F 1 1 G 1 1 1 G G F . n F 1 2 U 2 2 2 U U F . n F 1 3 A 3 3 3 A A F . n F 1 4 RSQ 4 4 4 RSQ RSQ F . n F 1 5 G 5 5 5 G G F . n F 1 6 U 6 6 6 U U F . n F 1 7 A 7 7 7 A A F . n F 1 8 C 8 8 8 C C F . n G 1 1 G 1 1 1 G G G . n G 1 2 U 2 2 2 U U G . n G 1 3 A 3 3 3 A A G . n G 1 4 RSQ 4 4 4 RSQ RSQ G . n G 1 5 G 5 5 5 G G G . n G 1 6 U 6 6 6 U U G . n G 1 7 A 7 7 7 A A G . n G 1 8 C 8 8 8 C C G . n H 1 1 G 1 1 1 G G H . n H 1 2 U 2 2 2 U U H . n H 1 3 A 3 3 3 A A H . n H 1 4 RSQ 4 4 4 RSQ RSQ H . n H 1 5 G 5 5 5 G G H . n H 1 6 U 6 6 6 U U H . n H 1 7 A 7 7 7 A A H . n H 1 8 C 8 8 8 C C H . n I 1 1 G 1 1 1 G G I . n I 1 2 U 2 2 2 U U I . n I 1 3 A 3 3 3 A A I . n I 1 4 RSQ 4 4 4 RSQ RSQ I . n I 1 5 G 5 5 5 G G I . n I 1 6 U 6 6 6 U U I . n I 1 7 A 7 7 7 A A I . n I 1 8 C 8 8 8 C C I . n J 1 1 G 1 1 1 G G J . n J 1 2 U 2 2 2 U U J . n J 1 3 A 3 3 3 A A J . n J 1 4 RSQ 4 4 4 RSQ RSQ J . n J 1 5 G 5 5 5 G G J . n J 1 6 U 6 6 6 U U J . n J 1 7 A 7 7 7 A A J . n J 1 8 C 8 8 8 C C J . n K 1 1 G 1 1 1 G G K . n K 1 2 U 2 2 2 U U K . n K 1 3 A 3 3 3 A A K . n K 1 4 RSQ 4 4 4 RSQ RSQ K . n K 1 5 G 5 5 5 G G K . n K 1 6 U 6 6 6 U U K . n K 1 7 A 7 7 7 A A K . n K 1 8 C 8 8 8 C C K . n L 1 1 G 1 1 1 G G L . n L 1 2 U 2 2 2 U U L . n L 1 3 A 3 3 3 A A L . n L 1 4 RSQ 4 4 4 RSQ RSQ L . n L 1 5 G 5 5 5 G G L . n L 1 6 U 6 6 6 U U L . n L 1 7 A 7 7 7 A A L . n L 1 8 C 8 8 8 C C L . n M 1 1 G 1 1 1 G G M . n M 1 2 U 2 2 2 U U M . n M 1 3 A 3 3 3 A A M . n M 1 4 RSQ 4 4 4 RSQ RSQ M . n M 1 5 G 5 5 5 G G M . n M 1 6 U 6 6 6 U U M . n M 1 7 A 7 7 7 A A M . n M 1 8 C 8 8 8 C C M . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code N 2 HOH 1 101 1 HOH HOH D . O 2 HOH 1 101 5 HOH HOH K . O 2 HOH 2 102 4 HOH HOH K . P 2 HOH 1 101 6 HOH HOH L . P 2 HOH 2 102 2 HOH HOH L . P 2 HOH 3 103 3 HOH HOH L . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 4 author_and_software_defined_assembly PISA dimeric 2 5 author_and_software_defined_assembly PISA dimeric 2 6 author_and_software_defined_assembly PISA dimeric 2 7 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1 C,D,N 3 1 E,F 4 1 G,H 5 1 I,J 6 1 K,L,O,P 7 1,2 M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 740 ? 1 MORE -2 ? 1 'SSA (A^2)' 3080 ? 2 'ABSA (A^2)' 770 ? 2 MORE -2 ? 2 'SSA (A^2)' 3090 ? 3 'ABSA (A^2)' 750 ? 3 MORE -1 ? 3 'SSA (A^2)' 3060 ? 4 'ABSA (A^2)' 740 ? 4 MORE -0 ? 4 'SSA (A^2)' 3070 ? 5 'ABSA (A^2)' 750 ? 5 MORE -1 ? 5 'SSA (A^2)' 3050 ? 6 'ABSA (A^2)' 740 ? 6 MORE -1 ? 6 'SSA (A^2)' 3090 ? 7 'ABSA (A^2)' 730 ? 7 MORE -2 ? 7 'SSA (A^2)' 3070 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_658 -x+1,y,-z+3 -1.0000000000 0.0000000000 0.0000000000 105.3613858212 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 147.9925965523 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-04-27 2 'Structure model' 1 1 2016-06-15 3 'Structure model' 1 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' citation 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 39.2459 6.9450 35.6679 0.1545 0.1802 0.3151 -0.0994 -0.0347 -0.0621 1.3680 1.4375 2.7135 0.0506 0.3619 0.2804 0.2389 -0.3272 -0.1316 0.0748 0.1489 -0.4711 -0.4078 0.2967 -0.3878 'X-RAY DIFFRACTION' 2 ? refined 9.3915 8.4055 27.8362 0.2466 0.5901 0.5264 -0.0149 -0.1002 0.0085 1.1450 1.2301 7.3553 -0.2464 1.1787 1.3444 0.1189 0.2657 -0.4789 -0.3028 -0.0896 0.5481 0.0644 -1.1472 -0.0293 'X-RAY DIFFRACTION' 3 ? refined 51.7282 1.9951 76.6350 0.9388 0.7782 1.1408 0.0822 -0.0702 -0.0502 0.8374 0.2226 11.8546 -0.2183 2.0727 -0.7857 -0.4572 -0.5658 0.0907 -0.0240 0.2763 -0.3803 0.7962 -1.3978 0.1809 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 8 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 B 1 ? ? B 8 ? ? ? ? 'X-RAY DIFFRACTION' 3 1 C 1 ? ? C 8 ? ? ? ? 'X-RAY DIFFRACTION' 4 1 D 1 ? ? D 8 ? ? ? ? 'X-RAY DIFFRACTION' 5 1 E 1 ? ? E 8 ? ? ? ? 'X-RAY DIFFRACTION' 6 1 F 1 ? ? F 8 ? ? ? ? 'X-RAY DIFFRACTION' 7 2 G 1 ? ? G 8 ? ? ? ? 'X-RAY DIFFRACTION' 8 2 H 1 ? ? H 8 ? ? ? ? 'X-RAY DIFFRACTION' 9 2 I 1 ? ? I 8 ? ? ? ? 'X-RAY DIFFRACTION' 10 2 J 1 ? ? J 8 ? ? ? ? 'X-RAY DIFFRACTION' 11 2 K 1 ? ? K 8 ? ? ? ? 'X-RAY DIFFRACTION' 12 2 L 1 ? ? L 8 ? ? ? ? 'X-RAY DIFFRACTION' 13 3 M 1 ? ? M 8 ? ? ? ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0107 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N2 _pdbx_validate_symm_contact.auth_asym_id_1 M _pdbx_validate_symm_contact.auth_comp_id_1 G _pdbx_validate_symm_contact.auth_seq_id_1 1 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O2 _pdbx_validate_symm_contact.auth_asym_id_2 M _pdbx_validate_symm_contact.auth_comp_id_2 C _pdbx_validate_symm_contact.auth_seq_id_2 8 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_658 _pdbx_validate_symm_contact.dist 2.03 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A A 3 ? ? P A RSQ 4 ? ? 1.485 1.607 -0.122 0.012 Y 2 1 "O3'" A RSQ 4 ? ? P A G 5 ? ? 1.497 1.607 -0.110 0.012 Y 3 1 "O3'" B A 3 ? ? P B RSQ 4 ? ? 1.457 1.607 -0.150 0.012 Y 4 1 "O3'" B RSQ 4 ? ? P B G 5 ? ? 1.466 1.607 -0.141 0.012 Y 5 1 "O3'" B G 5 ? ? P B U 6 ? ? 1.534 1.607 -0.073 0.012 Y 6 1 "O3'" C A 3 ? ? P C RSQ 4 ? ? 1.507 1.607 -0.100 0.012 Y 7 1 "O3'" C RSQ 4 ? ? P C G 5 ? ? 1.505 1.607 -0.102 0.012 Y 8 1 "O3'" D A 3 ? ? P D RSQ 4 ? ? 1.464 1.607 -0.143 0.012 Y 9 1 "O3'" D RSQ 4 ? ? P D G 5 ? ? 1.505 1.607 -0.102 0.012 Y 10 1 "O3'" E A 3 ? ? P E RSQ 4 ? ? 1.486 1.607 -0.121 0.012 Y 11 1 "O3'" E RSQ 4 ? ? P E G 5 ? ? 1.500 1.607 -0.107 0.012 Y 12 1 "O3'" E A 7 ? ? P E C 8 ? ? 1.529 1.607 -0.078 0.012 Y 13 1 "O3'" F A 3 ? ? P F RSQ 4 ? ? 1.469 1.607 -0.138 0.012 Y 14 1 "O3'" F RSQ 4 ? ? P F G 5 ? ? 1.450 1.607 -0.157 0.012 Y 15 1 "O3'" G A 3 ? ? P G RSQ 4 ? ? 1.499 1.607 -0.108 0.012 Y 16 1 "O3'" G RSQ 4 ? ? P G G 5 ? ? 1.503 1.607 -0.104 0.012 Y 17 1 "O3'" G A 7 ? ? P G C 8 ? ? 1.524 1.607 -0.083 0.012 Y 18 1 "O3'" H A 3 ? ? P H RSQ 4 ? ? 1.506 1.607 -0.101 0.012 Y 19 1 "O3'" H RSQ 4 ? ? P H G 5 ? ? 1.498 1.607 -0.109 0.012 Y 20 1 "O3'" I A 3 ? ? P I RSQ 4 ? ? 1.497 1.607 -0.110 0.012 Y 21 1 "O3'" I RSQ 4 ? ? P I G 5 ? ? 1.487 1.607 -0.120 0.012 Y 22 1 "O3'" J A 3 ? ? P J RSQ 4 ? ? 1.517 1.607 -0.090 0.012 Y 23 1 "O3'" J RSQ 4 ? ? P J G 5 ? ? 1.482 1.607 -0.125 0.012 Y 24 1 "O3'" K A 3 ? ? P K RSQ 4 ? ? 1.516 1.607 -0.091 0.012 Y 25 1 "O3'" K RSQ 4 ? ? P K G 5 ? ? 1.520 1.607 -0.087 0.012 Y 26 1 "O3'" L A 3 ? ? P L RSQ 4 ? ? 1.524 1.607 -0.083 0.012 Y 27 1 "O3'" L RSQ 4 ? ? P L G 5 ? ? 1.474 1.607 -0.133 0.012 Y 28 1 "O3'" M A 3 ? ? P M RSQ 4 ? ? 1.490 1.607 -0.117 0.012 Y 29 1 "O3'" M RSQ 4 ? ? P M G 5 ? ? 1.497 1.607 -0.110 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A A 3 ? ? P A RSQ 4 ? ? OP2 A RSQ 4 ? ? 118.57 110.50 8.07 1.10 Y 2 1 "C3'" A RSQ 4 ? ? "O3'" A RSQ 4 ? ? P A G 5 ? ? 131.91 119.70 12.21 1.20 Y 3 1 "O5'" A U 6 ? ? P A U 6 ? ? OP2 A U 6 ? ? 98.97 105.70 -6.73 0.90 N 4 1 "O5'" B A 3 ? ? P B A 3 ? ? OP2 B A 3 ? ? 99.37 105.70 -6.33 0.90 N 5 1 "O3'" C A 3 ? ? P C RSQ 4 ? ? OP1 C RSQ 4 ? ? 89.97 105.20 -15.23 2.20 Y 6 1 "C3'" C RSQ 4 ? ? "O3'" C RSQ 4 ? ? P C G 5 ? ? 139.88 119.70 20.18 1.20 Y 7 1 "O5'" D G 5 ? ? P D G 5 ? ? OP2 D G 5 ? ? 93.70 105.70 -12.00 0.90 N 8 1 "C3'" E RSQ 4 ? ? "O3'" E RSQ 4 ? ? P E G 5 ? ? 138.77 119.70 19.07 1.20 Y 9 1 "O3'" E RSQ 4 ? ? P E G 5 ? ? OP1 E G 5 ? ? 123.61 110.50 13.11 1.10 Y 10 1 "O3'" F A 3 ? ? P F RSQ 4 ? ? OP2 F RSQ 4 ? ? 124.20 110.50 13.70 1.10 Y 11 1 "C3'" F RSQ 4 ? ? "O3'" F RSQ 4 ? ? P F G 5 ? ? 135.68 119.70 15.98 1.20 Y 12 1 "O3'" F RSQ 4 ? ? P F G 5 ? ? OP1 F G 5 ? ? 124.46 110.50 13.96 1.10 Y 13 1 "O3'" G A 3 ? ? P G RSQ 4 ? ? "O5'" G RSQ 4 ? ? 90.36 104.00 -13.64 1.90 Y 14 1 "C3'" G RSQ 4 ? ? "O3'" G RSQ 4 ? ? P G G 5 ? ? 132.78 119.70 13.08 1.20 Y 15 1 "C3'" J A 3 ? ? "O3'" J A 3 ? ? P J RSQ 4 ? ? 128.08 119.70 8.38 1.20 Y 16 1 "O3'" J RSQ 4 ? ? P J G 5 ? ? OP2 J G 5 ? ? 117.61 110.50 7.11 1.10 Y 17 1 "C3'" L A 3 ? ? "O3'" L A 3 ? ? P L RSQ 4 ? ? 106.95 119.70 -12.75 1.20 Y 18 1 "O3'" L A 3 ? ? P L RSQ 4 ? ? OP2 L RSQ 4 ? ? 121.09 110.50 10.59 1.10 Y 19 1 "O3'" L RSQ 4 ? ? P L G 5 ? ? OP1 L G 5 ? ? 91.68 105.20 -13.52 2.20 Y 20 1 "O5'" L U 6 ? ? P L U 6 ? ? OP2 L U 6 ? ? 98.40 105.70 -7.30 0.90 N 21 1 P L C 8 ? ? "O5'" L C 8 ? ? "C5'" L C 8 ? ? 110.96 120.90 -9.94 1.60 N 22 1 "C3'" M RSQ 4 ? ? "O3'" M RSQ 4 ? ? P M G 5 ? ? 130.17 119.70 10.47 1.20 Y 23 1 "O3'" M RSQ 4 ? ? P M G 5 ? ? OP1 M G 5 ? ? 121.20 110.50 10.70 1.10 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 RSQ P P N N 114 RSQ N1 N N N 115 RSQ C2 C N N 116 RSQ O2 O N N 117 RSQ N3 N N N 118 RSQ C4 C N N 119 RSQ N4 N N N 120 RSQ C5 C N N 121 RSQ C6 C N N 122 RSQ "C1'" C N R 123 RSQ C10 C N N 124 RSQ "C2'" C N R 125 RSQ "O2'" O N N 126 RSQ "C3'" C N S 127 RSQ "O3'" O N N 128 RSQ O30 O N N 129 RSQ "C4'" C N R 130 RSQ "O4'" O N N 131 RSQ "C5'" C N N 132 RSQ "O5'" O N N 133 RSQ OP1 O N N 134 RSQ OP2 O N N 135 RSQ OP3 O N N 136 RSQ H6 H N N 137 RSQ "H5'" H N N 138 RSQ "H1'" H N N 139 RSQ "H2'" H N N 140 RSQ "HO2'" H N N 141 RSQ H10 H N N 142 RSQ "H3'" H N N 143 RSQ "H4'" H N N 144 RSQ HN4 H N N 145 RSQ HN4A H N N 146 RSQ "H5'A" H N N 147 RSQ "HO3'" H N N 148 RSQ HOP2 H N N 149 RSQ HOP3 H N N 150 U OP3 O N N 151 U P P N N 152 U OP1 O N N 153 U OP2 O N N 154 U "O5'" O N N 155 U "C5'" C N N 156 U "C4'" C N R 157 U "O4'" O N N 158 U "C3'" C N S 159 U "O3'" O N N 160 U "C2'" C N R 161 U "O2'" O N N 162 U "C1'" C N R 163 U N1 N N N 164 U C2 C N N 165 U O2 O N N 166 U N3 N N N 167 U C4 C N N 168 U O4 O N N 169 U C5 C N N 170 U C6 C N N 171 U HOP3 H N N 172 U HOP2 H N N 173 U "H5'" H N N 174 U "H5''" H N N 175 U "H4'" H N N 176 U "H3'" H N N 177 U "HO3'" H N N 178 U "H2'" H N N 179 U "HO2'" H N N 180 U "H1'" H N N 181 U H3 H N N 182 U H5 H N N 183 U H6 H N N 184 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 RSQ OP1 P doub N N 118 RSQ "O5'" P sing N N 119 RSQ P OP2 sing N N 120 RSQ P OP3 sing N N 121 RSQ "C1'" N1 sing N N 122 RSQ N1 C2 sing N N 123 RSQ N1 C6 sing N N 124 RSQ O2 C2 doub N N 125 RSQ C2 N3 sing N N 126 RSQ N3 C4 doub N N 127 RSQ C5 C4 sing N N 128 RSQ C4 N4 sing N N 129 RSQ N4 HN4A sing N N 130 RSQ N4 HN4 sing N N 131 RSQ C6 C5 doub N N 132 RSQ C5 C10 sing N N 133 RSQ H6 C6 sing N N 134 RSQ "C2'" "C1'" sing N N 135 RSQ "H1'" "C1'" sing N N 136 RSQ "C1'" "O4'" sing N N 137 RSQ H10 C10 sing N N 138 RSQ C10 O30 doub N N 139 RSQ "O2'" "C2'" sing N N 140 RSQ "C2'" "C3'" sing N N 141 RSQ "C2'" "H2'" sing N N 142 RSQ "HO2'" "O2'" sing N N 143 RSQ "O3'" "C3'" sing N N 144 RSQ "C3'" "C4'" sing N N 145 RSQ "C3'" "H3'" sing N N 146 RSQ "O3'" "HO3'" sing N N 147 RSQ "H4'" "C4'" sing N N 148 RSQ "C4'" "O4'" sing N N 149 RSQ "C4'" "C5'" sing N N 150 RSQ "H5'" "C5'" sing N N 151 RSQ "C5'" "H5'A" sing N N 152 RSQ "C5'" "O5'" sing N N 153 RSQ OP2 HOP2 sing N N 154 RSQ OP3 HOP3 sing N N 155 U OP3 P sing N N 156 U OP3 HOP3 sing N N 157 U P OP1 doub N N 158 U P OP2 sing N N 159 U P "O5'" sing N N 160 U OP2 HOP2 sing N N 161 U "O5'" "C5'" sing N N 162 U "C5'" "C4'" sing N N 163 U "C5'" "H5'" sing N N 164 U "C5'" "H5''" sing N N 165 U "C4'" "O4'" sing N N 166 U "C4'" "C3'" sing N N 167 U "C4'" "H4'" sing N N 168 U "O4'" "C1'" sing N N 169 U "C3'" "O3'" sing N N 170 U "C3'" "C2'" sing N N 171 U "C3'" "H3'" sing N N 172 U "O3'" "HO3'" sing N N 173 U "C2'" "O2'" sing N N 174 U "C2'" "C1'" sing N N 175 U "C2'" "H2'" sing N N 176 U "O2'" "HO2'" sing N N 177 U "C1'" N1 sing N N 178 U "C1'" "H1'" sing N N 179 U N1 C2 sing N N 180 U N1 C6 sing N N 181 U C2 O2 doub N N 182 U C2 N3 sing N N 183 U N3 C4 sing N N 184 U N3 H3 sing N N 185 U C4 O4 doub N N 186 U C4 C5 sing N N 187 U C5 C6 doub N N 188 U C5 H5 sing N N 189 U C6 H6 sing N N 190 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5HNQ 'double helix' 5HNQ 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 A C 8 1_555 -0.007 -0.004 -0.154 -2.536 -15.034 -0.525 1 B_G1:C8_A B 1 ? A 8 ? 19 1 1 B U 2 1_555 A A 7 1_555 0.295 -0.097 0.219 -2.650 -14.094 2.534 2 B_U2:A7_A B 2 ? A 7 ? 20 1 1 B A 3 1_555 A U 6 1_555 -0.022 -0.044 0.101 -4.663 -12.618 3.342 3 B_A3:U6_A B 3 ? A 6 ? 20 1 1 B RSQ 4 1_555 A G 5 1_555 0.244 -0.252 0.317 -0.629 -15.477 -2.546 4 B_RSQ4:G5_A B 4 ? A 5 ? 19 1 1 B G 5 1_555 A RSQ 4 1_555 -0.473 0.072 0.167 -4.114 -13.696 2.374 5 B_G5:RSQ4_A B 5 ? A 4 ? 19 1 1 B U 6 1_555 A A 3 1_555 0.443 -0.143 0.105 -1.923 -14.686 -2.789 6 B_U6:A3_A B 6 ? A 3 ? 20 1 1 B A 7 1_555 A U 2 1_555 -0.096 -0.116 -0.008 -2.553 -18.227 3.379 7 B_A7:U2_A B 7 ? A 2 ? 20 1 1 B C 8 1_555 A G 1 1_555 0.280 -0.038 -0.177 7.440 -9.786 4.165 8 B_C8:G1_A B 8 ? A 1 ? 19 1 1 D G 1 1_555 C C 8 1_555 -0.280 -0.292 0.079 -1.368 -12.065 -1.449 9 D_G1:C8_C D 1 ? C 8 ? 19 1 1 D U 2 1_555 C A 7 1_555 -0.081 -0.280 0.085 6.906 -15.837 3.368 10 D_U2:A7_C D 2 ? C 7 ? 20 1 1 D A 3 1_555 C U 6 1_555 -0.017 0.015 -0.182 -3.869 -11.519 6.597 11 D_A3:U6_C D 3 ? C 6 ? 20 1 1 D RSQ 4 1_555 C G 5 1_555 -0.067 0.007 -0.255 2.037 -14.126 -2.480 12 D_RSQ4:G5_C D 4 ? C 5 ? 19 1 1 D G 5 1_555 C RSQ 4 1_555 -0.054 -0.192 -0.133 -7.419 -17.871 -1.201 13 D_G5:RSQ4_C D 5 ? C 4 ? 19 1 1 D U 6 1_555 C A 3 1_555 0.252 -0.253 0.064 -3.840 -16.643 -0.172 14 D_U6:A3_C D 6 ? C 3 ? 20 1 1 D A 7 1_555 C U 2 1_555 0.725 -0.078 0.050 -4.031 -10.493 11.494 15 D_A7:U2_C D 7 ? C 2 ? 20 1 1 D C 8 1_555 C G 1 1_555 0.675 -0.067 0.113 1.992 -12.030 4.443 16 D_C8:G1_C D 8 ? C 1 ? 19 1 1 F G 1 1_555 E C 8 1_555 -0.419 0.093 0.161 -3.419 -10.901 6.158 17 F_G1:C8_E F 1 ? E 8 ? 19 1 1 F U 2 1_555 E A 7 1_555 0.349 -0.284 -0.194 1.531 -13.800 7.466 18 F_U2:A7_E F 2 ? E 7 ? 20 1 1 F A 3 1_555 E U 6 1_555 -0.006 0.011 -0.020 -0.713 -12.925 -2.173 19 F_A3:U6_E F 3 ? E 6 ? 20 1 1 F RSQ 4 1_555 E G 5 1_555 0.037 -0.036 0.255 0.116 -15.289 2.037 20 F_RSQ4:G5_E F 4 ? E 5 ? 19 1 1 F G 5 1_555 E RSQ 4 1_555 0.279 -0.026 -0.171 -6.025 -15.985 5.813 21 F_G5:RSQ4_E F 5 ? E 4 ? 19 1 1 F U 6 1_555 E A 3 1_555 0.482 0.161 0.059 -3.946 -7.544 10.886 22 F_U6:A3_E F 6 ? E 3 ? ? 1 1 F A 7 1_555 E U 2 1_555 -0.328 -0.279 -0.399 -10.872 -7.192 3.855 23 F_A7:U2_E F 7 ? E 2 ? 20 1 1 F C 8 1_555 E G 1 1_555 1.116 -0.346 -0.299 1.901 -3.000 -13.452 24 F_C8:G1_E F 8 ? E 1 ? ? 1 1 G U 2 1_555 H A 7 1_555 -0.690 0.090 -0.037 5.557 -11.770 13.277 25 G_U2:A7_H G 2 ? H 7 ? ? ? 1 G A 3 1_555 H U 6 1_555 -0.658 -0.265 -0.147 -0.037 -12.287 -0.481 26 G_A3:U6_H G 3 ? H 6 ? 20 1 1 G RSQ 4 1_555 H G 5 1_555 0.523 -0.316 0.137 -5.896 -11.601 -6.963 27 G_RSQ4:G5_H G 4 ? H 5 ? 19 1 1 G G 5 1_555 H RSQ 4 1_555 1.162 -0.091 -0.213 -5.673 -20.737 -16.161 28 G_G5:RSQ4_H G 5 ? H 4 ? ? 1 1 G U 6 1_555 H A 3 1_555 -0.543 0.486 0.137 -3.847 -18.997 13.580 29 G_U6:A3_H G 6 ? H 3 ? ? ? 1 G A 7 1_555 H U 2 1_555 -0.359 -0.262 -0.425 -11.580 -19.985 4.046 30 G_A7:U2_H G 7 ? H 2 ? 20 1 1 G C 8 1_555 H G 1 1_555 0.655 0.755 0.286 -4.601 -17.850 28.324 31 G_C8:G1_H G 8 ? H 1 ? ? 1 1 J G 1 1_555 I C 8 1_555 0.293 -0.209 0.478 4.410 -14.615 1.347 32 J_G1:C8_I J 1 ? I 8 ? 19 1 1 J U 2 1_555 I A 7 1_555 0.376 0.040 0.532 -2.015 1.681 10.089 33 J_U2:A7_I J 2 ? I 7 ? 20 1 1 J A 3 1_555 I U 6 1_555 0.968 -0.345 0.643 10.931 -3.683 -5.752 34 J_A3:U6_I J 3 ? I 6 ? 20 1 1 J RSQ 4 1_555 I G 5 1_555 0.276 0.438 -0.078 3.802 -15.011 14.464 35 J_RSQ4:G5_I J 4 ? I 5 ? ? 1 1 J G 5 1_555 I RSQ 4 1_555 -0.081 0.217 0.279 -9.600 -22.814 7.870 36 J_G5:RSQ4_I J 5 ? I 4 ? ? 1 1 J U 6 1_555 I A 3 1_555 0.027 -0.220 -0.509 2.756 -18.570 1.240 37 J_U6:A3_I J 6 ? I 3 ? 20 1 1 J A 7 1_555 I U 2 1_555 0.749 -0.282 0.303 4.600 -11.209 -3.967 38 J_A7:U2_I J 7 ? I 2 ? 20 1 1 J C 8 1_555 I G 1 1_555 -0.141 -0.100 -0.028 9.554 -10.641 -9.068 39 J_C8:G1_I J 8 ? I 1 ? 19 1 1 K G 1 1_555 L C 8 1_555 -0.060 0.188 0.027 -3.203 -18.414 7.244 40 K_G1:C8_L K 1 ? L 8 ? 19 1 1 K U 2 1_555 L A 7 1_555 -0.063 0.032 0.099 -5.737 -15.599 0.480 41 K_U2:A7_L K 2 ? L 7 ? 20 1 1 K A 3 1_555 L U 6 1_555 0.339 0.012 0.141 -4.698 -17.418 4.665 42 K_A3:U6_L K 3 ? L 6 ? 20 1 1 K RSQ 4 1_555 L G 5 1_555 -0.136 -0.048 0.516 -3.546 -16.202 0.744 43 K_RSQ4:G5_L K 4 ? L 5 ? 19 1 1 K G 5 1_555 L RSQ 4 1_555 -0.264 -0.007 0.175 -0.418 -17.656 8.772 44 K_G5:RSQ4_L K 5 ? L 4 ? 19 1 1 K U 6 1_555 L A 3 1_555 -0.835 -0.424 0.040 -1.393 -13.949 -5.586 45 K_U6:A3_L K 6 ? L 3 ? 20 1 1 K A 7 1_555 L U 2 1_555 -0.577 -0.152 -0.273 -1.106 -20.549 0.298 46 K_A7:U2_L K 7 ? L 2 ? 20 1 1 K C 8 1_555 L G 1 1_555 0.071 0.367 -0.220 9.041 -14.446 1.629 47 K_C8:G1_L K 8 ? L 1 ? 19 1 1 M G 1 1_555 M C 8 2_658 -0.914 -0.256 -0.210 -18.467 -15.071 16.457 48 M_G1:C8_M M 1 ? M 8 ? ? 1 1 M U 2 1_555 M A 7 2_658 -0.821 -0.409 0.520 -7.394 -2.069 15.957 49 M_U2:A7_M M 2 ? M 7 ? 20 1 1 M A 3 1_555 M U 6 2_658 -0.536 0.228 0.641 1.526 -14.160 -6.947 50 M_A3:U6_M M 3 ? M 6 ? 20 1 1 M RSQ 4 1_555 M G 5 2_658 0.673 -0.756 0.705 -8.817 -14.522 -4.952 51 M_RSQ4:G5_M M 4 ? M 5 ? 19 1 1 M G 5 1_555 M RSQ 4 2_658 -0.673 -0.756 0.705 8.817 -14.522 -4.952 52 M_G5:RSQ4_M M 5 ? M 4 ? 19 1 1 M U 6 1_555 M A 3 2_658 0.536 0.228 0.641 -1.526 -14.160 -6.947 53 M_U6:A3_M M 6 ? M 3 ? 20 1 1 M A 7 1_555 M U 2 2_658 0.821 -0.409 0.520 7.394 -2.069 15.957 54 M_A7:U2_M M 7 ? M 2 ? 20 1 1 M C 8 1_555 M G 1 2_658 0.914 -0.256 -0.210 18.467 -15.071 16.457 55 M_C8:G1_M M 8 ? M 1 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 A C 8 1_555 B U 2 1_555 A A 7 1_555 -0.365 -1.387 3.107 -3.593 4.726 36.211 -2.805 0.123 2.931 7.541 5.734 36.679 1 BB_G1U2:A7C8_AA B 1 ? A 8 ? B 2 ? A 7 ? 1 B U 2 1_555 A A 7 1_555 B A 3 1_555 A U 6 1_555 0.020 -1.304 3.132 0.775 14.456 31.145 -4.203 0.073 2.318 25.283 -1.355 34.269 2 BB_U2A3:U6A7_AA B 2 ? A 7 ? B 3 ? A 6 ? 1 B A 3 1_555 A U 6 1_555 B RSQ 4 1_555 A G 5 1_555 -0.406 -1.369 3.189 -1.530 10.472 32.232 -3.891 0.471 2.644 18.259 2.667 33.882 3 BB_A3RSQ4:G5U6_AA B 3 ? A 6 ? B 4 ? A 5 ? 1 B RSQ 4 1_555 A G 5 1_555 B G 5 1_555 A RSQ 4 1_555 0.756 -1.874 3.134 2.612 14.805 28.382 -5.621 -0.977 1.996 27.861 -4.914 32.045 4 BB_RSQ4G5:RSQ4G5_AA B 4 ? A 5 ? B 5 ? A 4 ? 1 B G 5 1_555 A RSQ 4 1_555 B U 6 1_555 A A 3 1_555 -0.190 -1.406 3.247 0.261 1.630 35.863 -2.511 0.345 3.180 2.645 -0.424 35.900 5 BB_G5U6:A3RSQ4_AA B 5 ? A 4 ? B 6 ? A 3 ? 1 B U 6 1_555 A A 3 1_555 B A 7 1_555 A U 2 1_555 0.097 -1.394 3.110 1.514 10.337 30.185 -4.198 0.066 2.510 19.143 -2.803 31.902 6 BB_U6A7:U2A3_AA B 6 ? A 3 ? B 7 ? A 2 ? 1 B A 7 1_555 A U 2 1_555 B C 8 1_555 A G 1 1_555 0.420 -1.014 3.095 2.344 -0.450 33.984 -1.662 -0.362 3.129 -0.769 -4.004 34.065 7 BB_A7C8:G1U2_AA B 7 ? A 2 ? B 8 ? A 1 ? 1 B C 8 1_555 A G 1 1_555 D G 1 1_555 C C 8 1_555 -0.076 -3.668 3.534 -2.858 11.907 -11.848 0.540 -3.100 5.008 -44.832 -10.762 -17.024 8 BD_C8G1:C8G1_CA B 8 ? A 1 ? D 1 ? C 8 ? 1 D G 1 1_555 C C 8 1_555 D U 2 1_555 C A 7 1_555 0.218 -1.365 3.046 0.931 0.930 34.975 -2.400 -0.232 3.015 1.547 -1.548 34.999 9 DD_G1U2:A7C8_CC D 1 ? C 8 ? D 2 ? C 7 ? 1 D U 2 1_555 C A 7 1_555 D A 3 1_555 C U 6 1_555 -0.449 -1.471 3.399 0.444 20.837 31.362 -4.783 0.751 2.055 34.226 -0.729 37.510 10 DD_U2A3:U6A7_CC D 2 ? C 7 ? D 3 ? C 6 ? 1 D A 3 1_555 C U 6 1_555 D RSQ 4 1_555 C G 5 1_555 -0.573 -1.409 3.127 0.241 8.870 29.924 -4.134 1.107 2.608 16.721 -0.453 31.183 11 DD_A3RSQ4:G5U6_CC D 3 ? C 6 ? D 4 ? C 5 ? 1 D RSQ 4 1_555 C G 5 1_555 D G 5 1_555 C RSQ 4 1_555 0.725 -1.418 3.493 -0.004 14.492 32.001 -4.490 -1.204 2.627 24.762 0.007 35.052 12 DD_RSQ4G5:RSQ4G5_CC D 4 ? C 5 ? D 5 ? C 4 ? 1 D G 5 1_555 C RSQ 4 1_555 D U 6 1_555 C A 3 1_555 0.437 -2.248 3.137 0.383 2.653 33.610 -4.279 -0.696 2.961 4.579 -0.662 33.713 13 DD_G5U6:A3RSQ4_CC D 5 ? C 4 ? D 6 ? C 3 ? 1 D U 6 1_555 C A 3 1_555 D A 7 1_555 C U 2 1_555 -0.148 -1.297 3.174 2.896 9.364 37.356 -3.032 0.554 2.763 14.319 -4.429 38.576 14 DD_U6A7:U2A3_CC D 6 ? C 3 ? D 7 ? C 2 ? 1 D A 7 1_555 C U 2 1_555 D C 8 1_555 C G 1 1_555 0.440 -0.881 3.162 2.945 6.114 30.673 -2.716 -0.289 2.963 11.384 -5.483 31.398 15 DD_A7C8:G1U2_CC D 7 ? C 2 ? D 8 ? C 1 ? 1 D C 8 1_555 C G 1 1_555 F G 1 1_555 E C 8 1_555 0.049 -4.114 3.399 -2.353 6.264 -20.621 7.898 -1.014 4.418 -16.932 -6.360 -21.668 16 DF_C8G1:C8G1_EC D 8 ? C 1 ? F 1 ? E 8 ? 1 F G 1 1_555 E C 8 1_555 F U 2 1_555 E A 7 1_555 -0.433 -1.528 3.112 1.892 5.195 35.937 -3.113 0.935 2.846 8.359 -3.044 36.346 17 FF_G1U2:A7C8_EE F 1 ? E 8 ? F 2 ? E 7 ? 1 F U 2 1_555 E A 7 1_555 F A 3 1_555 E U 6 1_555 -0.292 -1.453 3.126 -1.222 12.874 27.800 -4.954 0.345 2.257 25.144 2.386 30.607 18 FF_U2A3:U6A7_EE F 2 ? E 7 ? F 3 ? E 6 ? 1 F A 3 1_555 E U 6 1_555 F RSQ 4 1_555 E G 5 1_555 -0.330 -1.497 3.175 -2.112 9.222 34.376 -3.676 0.258 2.711 15.250 3.493 35.616 19 FF_A3RSQ4:G5U6_EE F 3 ? E 6 ? F 4 ? E 5 ? 1 F RSQ 4 1_555 E G 5 1_555 F G 5 1_555 E RSQ 4 1_555 0.233 -1.611 3.344 2.828 12.024 30.147 -4.844 0.047 2.544 21.993 -5.172 32.525 20 FF_RSQ4G5:RSQ4G5_EE F 4 ? E 5 ? F 5 ? E 4 ? 1 F G 5 1_555 E RSQ 4 1_555 F U 6 1_555 E A 3 1_555 0.342 -1.326 3.205 -1.354 7.012 35.746 -3.036 -0.724 2.888 11.285 2.178 36.430 21 FF_G5U6:A3RSQ4_EE F 5 ? E 4 ? F 6 ? E 3 ? 1 F U 6 1_555 E A 3 1_555 F A 7 1_555 E U 2 1_555 -0.330 -1.779 3.347 2.243 12.063 21.743 -7.309 1.356 2.045 29.179 -5.425 24.930 22 FF_U6A7:U2A3_EE F 6 ? E 3 ? F 7 ? E 2 ? 1 F A 7 1_555 E U 2 1_555 F C 8 1_555 E G 1 1_555 -0.619 -1.140 2.847 -0.914 7.792 50.029 -1.801 0.669 2.663 9.148 1.073 50.602 23 FF_A7C8:G1U2_EE F 7 ? E 2 ? F 8 ? E 1 ? 1 G U 2 1_555 H A 7 1_555 G A 3 1_555 H U 6 1_555 0.388 -0.899 3.573 -1.665 15.568 32.218 -3.790 -0.881 2.833 26.210 2.803 35.730 24 GG_U2A3:U6A7_HH G 2 ? H 7 ? G 3 ? H 6 ? 1 G A 3 1_555 H U 6 1_555 G RSQ 4 1_555 H G 5 1_555 -0.816 -1.521 3.363 -4.387 9.701 36.808 -3.522 0.701 2.958 14.983 6.775 38.265 25 GG_A3RSQ4:G5U6_HH G 3 ? H 6 ? G 4 ? H 5 ? 1 G RSQ 4 1_555 H G 5 1_555 G G 5 1_555 H RSQ 4 1_555 -0.932 -1.437 3.270 -0.496 7.126 40.081 -2.828 1.288 2.993 10.298 0.717 40.686 26 GG_RSQ4G5:RSQ4G5_HH G 4 ? H 5 ? G 5 ? H 4 ? 1 G G 5 1_555 H RSQ 4 1_555 G U 6 1_555 H A 3 1_555 1.013 -2.244 2.981 0.899 10.923 16.689 -10.157 -2.623 1.324 33.354 -2.744 19.944 27 GG_G5U6:A3RSQ4_HH G 5 ? H 4 ? G 6 ? H 3 ? 1 G U 6 1_555 H A 3 1_555 G A 7 1_555 H U 2 1_555 -0.399 -1.384 3.404 -0.879 16.996 36.490 -3.871 0.486 2.548 25.508 1.319 40.141 28 GG_U6A7:U2A3_HH G 6 ? H 3 ? G 7 ? H 2 ? 1 G A 7 1_555 H U 2 1_555 G C 8 1_555 H G 1 1_555 1.104 -0.725 3.179 -1.321 7.292 32.519 -2.406 -2.132 2.907 12.815 2.322 33.331 29 GG_A7C8:G1U2_HH G 7 ? H 2 ? G 8 ? H 1 ? 1 J G 1 1_555 I C 8 1_555 J U 2 1_555 I A 7 1_555 -0.085 -1.118 3.453 -6.790 5.201 25.080 -3.857 -1.662 3.079 11.555 15.086 26.476 30 JJ_G1U2:A7C8_II J 1 ? I 8 ? J 2 ? I 7 ? 1 J U 2 1_555 I A 7 1_555 J A 3 1_555 I U 6 1_555 -0.462 -1.875 2.323 0.525 11.575 42.580 -3.195 0.647 1.773 15.597 -0.707 44.058 31 JJ_U2A3:U6A7_II J 2 ? I 7 ? J 3 ? I 6 ? 1 J A 3 1_555 I U 6 1_555 J RSQ 4 1_555 I G 5 1_555 0.299 -1.049 3.395 7.799 7.131 25.456 -3.971 1.304 2.960 15.366 -16.805 27.529 32 JJ_A3RSQ4:G5U6_II J 3 ? I 6 ? J 4 ? I 5 ? 1 J RSQ 4 1_555 I G 5 1_555 J G 5 1_555 I RSQ 4 1_555 -0.402 -1.310 3.473 -3.793 13.651 32.989 -4.082 0.111 2.762 22.776 6.329 35.825 33 JJ_RSQ4G5:RSQ4G5_II J 4 ? I 5 ? J 5 ? I 4 ? 1 J G 5 1_555 I RSQ 4 1_555 J U 6 1_555 I A 3 1_555 -0.017 -1.156 2.865 6.298 4.623 29.699 -2.957 1.084 2.601 8.828 -12.026 30.687 34 JJ_G5U6:A3RSQ4_II J 5 ? I 4 ? J 6 ? I 3 ? 1 J U 6 1_555 I A 3 1_555 J A 7 1_555 I U 2 1_555 0.075 -1.182 3.322 -5.240 7.418 35.195 -2.911 -0.837 2.979 12.022 8.492 36.312 35 JJ_U6A7:U2A3_II J 6 ? I 3 ? J 7 ? I 2 ? 1 J A 7 1_555 I U 2 1_555 J C 8 1_555 I G 1 1_555 0.387 -1.539 3.094 4.086 1.819 25.786 -3.864 0.187 3.004 4.037 -9.068 26.165 36 JJ_A7C8:G1U2_II J 7 ? I 2 ? J 8 ? I 1 ? 1 J C 8 1_555 I G 1 1_555 K G 1 1_555 L C 8 1_555 0.609 -3.643 3.718 0.378 10.748 -12.815 1.454 2.483 5.173 -40.122 1.412 -16.716 37 JK_C8G1:C8G1_LI J 8 ? I 1 ? K 1 ? L 8 ? 1 K G 1 1_555 L C 8 1_555 K U 2 1_555 L A 7 1_555 -1.111 -1.352 3.126 -3.093 12.025 32.628 -3.906 1.431 2.575 20.501 5.273 34.850 38 KK_G1U2:A7C8_LL K 1 ? L 8 ? K 2 ? L 7 ? 1 K U 2 1_555 L A 7 1_555 K A 3 1_555 L U 6 1_555 0.596 -1.699 3.070 0.447 15.762 32.879 -4.543 -0.903 2.075 26.062 -0.739 36.370 39 KK_U2A3:U6A7_LL K 2 ? L 7 ? K 3 ? L 6 ? 1 K A 3 1_555 L U 6 1_555 K RSQ 4 1_555 L G 5 1_555 -0.397 -1.785 3.227 -2.646 3.455 27.149 -4.569 0.212 3.006 7.301 5.592 27.489 40 KK_A3RSQ4:G5U6_LL K 3 ? L 6 ? K 4 ? L 5 ? 1 K RSQ 4 1_555 L G 5 1_555 K G 5 1_555 L RSQ 4 1_555 -0.403 -1.524 3.073 0.147 11.151 28.783 -4.729 0.783 2.332 21.443 -0.283 30.825 41 KK_RSQ4G5:RSQ4G5_LL K 4 ? L 5 ? K 5 ? L 4 ? 1 K G 5 1_555 L RSQ 4 1_555 K U 6 1_555 L A 3 1_555 -0.267 -1.099 3.330 -0.355 4.590 28.655 -3.197 0.455 3.122 9.199 0.712 29.015 42 KK_G5U6:A3RSQ4_LL K 5 ? L 4 ? K 6 ? L 3 ? 1 K U 6 1_555 L A 3 1_555 K A 7 1_555 L U 2 1_555 0.319 -1.292 3.267 1.119 13.756 30.866 -4.285 -0.381 2.492 24.376 -1.984 33.743 43 KK_U6A7:U2A3_LL K 6 ? L 3 ? K 7 ? L 2 ? 1 K A 7 1_555 L U 2 1_555 K C 8 1_555 L G 1 1_555 0.211 -1.079 2.987 0.930 0.080 36.659 -1.724 -0.219 2.989 0.128 -1.479 36.670 44 KK_A7C8:G1U2_LL K 7 ? L 2 ? K 8 ? L 1 ? 1 M G 1 1_555 M C 8 2_658 M U 2 1_555 M A 7 2_658 -0.699 -1.226 3.073 -12.959 6.400 31.870 -2.963 -0.696 2.846 10.978 22.227 34.917 45 MM_G1U2:A7C8_MM M 1 ? M 8 ? M 2 ? M 7 ? 1 M U 2 1_555 M A 7 2_658 M A 3 1_555 M U 6 2_658 -0.920 -1.506 2.917 -0.427 3.631 29.139 -3.648 1.736 2.726 7.181 0.845 29.362 46 MM_U2A3:U6A7_MM M 2 ? M 7 ? M 3 ? M 6 ? 1 M A 3 1_555 M U 6 2_658 M RSQ 4 1_555 M G 5 2_658 0.103 -1.190 3.613 0.180 5.925 41.162 -2.355 -0.125 3.418 8.375 -0.254 41.569 47 MM_A3RSQ4:G5U6_MM M 3 ? M 6 ? M 4 ? M 5 ? 1 M RSQ 4 1_555 M G 5 2_658 M G 5 1_555 M RSQ 4 2_658 0.000 -2.515 2.424 0.000 14.440 23.774 -7.090 0.000 0.792 31.593 0.000 27.762 48 MM_RSQ4G5:RSQ4G5_MM M 4 ? M 5 ? M 5 ? M 4 ? 1 M G 5 1_555 M RSQ 4 2_658 M U 6 1_555 M A 3 2_658 -0.103 -1.190 3.613 -0.180 5.925 41.162 -2.355 0.125 3.418 8.375 0.254 41.569 49 MM_G5U6:A3RSQ4_MM M 5 ? M 4 ? M 6 ? M 3 ? 1 M U 6 1_555 M A 3 2_658 M A 7 1_555 M U 2 2_658 0.920 -1.506 2.917 0.427 3.631 29.139 -3.648 -1.736 2.726 7.181 -0.845 29.362 50 MM_U6A7:U2A3_MM M 6 ? M 3 ? M 7 ? M 2 ? 1 M A 7 1_555 M U 2 2_658 M C 8 1_555 M G 1 2_658 0.699 -1.226 3.073 12.959 6.400 31.870 -2.963 0.696 2.846 10.978 -22.227 34.917 51 MM_A7C8:G1U2_MM M 7 ? M 2 ? M 8 ? M 1 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5FC1 _pdbx_initial_refinement_model.details ? #