HEADER METAL TRANSPORT 19-JAN-16 5HO5 TITLE MAMB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAGNETOSOME PROTEIN MAMB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRA SP. QH-2; SOURCE 3 ORGANISM_TAXID: 1288970; SOURCE 4 GENE: MAMB, MGMAQ_1061; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS C-TERMINAL DOMAIN, MAGNETOTACTIC BACTERIA, METALLOCHAPERONE LIKE KEYWDS 2 DOMAIN, CATION DIFFUSION FACILITATOR, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.ZEYTUNI,N.KEREN,G.DAVIDOV,R.ZARIVACH REVDAT 4 10-JAN-24 5HO5 1 LINK REVDAT 3 16-OCT-19 5HO5 1 REMARK REVDAT 2 14-FEB-18 5HO5 1 JRNL REVDAT 1 01-FEB-17 5HO5 0 JRNL AUTH R.UEBE,N.KEREN-KHADMY,N.ZEYTUNI,E.KATZMANN,Y.NAVON, JRNL AUTH 2 G.DAVIDOV,R.BITTON,J.M.PLITZKO,D.SCHULER,R.ZARIVACH JRNL TITL THE DUAL ROLE OF MAMB IN MAGNETOSOME MEMBRANE ASSEMBLY AND JRNL TITL 2 MAGNETITE BIOMINERALIZATION. JRNL REF MOL. MICROBIOL. V. 107 542 2018 JRNL REFN ESSN 1365-2958 JRNL PMID 29243866 JRNL DOI 10.1111/MMI.13899 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 21510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1163 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1587 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2631 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2735 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2636 ; 0.013 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3731 ; 1.904 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6013 ; 2.083 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 6.367 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;35.872 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;13.583 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3162 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 659 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1344 ; 3.659 ; 1.369 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1343 ; 3.651 ; 1.368 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1678 ; 4.600 ; 2.021 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1679 ; 4.599 ; 2.022 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1391 ; 6.951 ; 2.084 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1392 ; 6.949 ; 2.085 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2044 ; 9.386 ; 2.857 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3118 ;10.839 ;12.958 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3044 ;10.893 ;12.528 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 210 291 B 210 291 9202 0.13 0.05 REMARK 3 2 A 210 289 C 210 289 8926 0.14 0.05 REMARK 3 3 A 210 291 D 210 291 9190 0.13 0.05 REMARK 3 4 B 210 289 C 210 289 8826 0.12 0.05 REMARK 3 5 B 209 292 D 209 292 9142 0.14 0.05 REMARK 3 6 C 210 289 D 210 289 8998 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0120 -2.9280 -12.1480 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0690 REMARK 3 T33: 0.0374 T12: -0.0083 REMARK 3 T13: -0.0022 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.4067 L22: 3.6273 REMARK 3 L33: 2.7855 L12: -1.2193 REMARK 3 L13: -0.5422 L23: -0.9853 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: -0.1108 S13: 0.2233 REMARK 3 S21: 0.0473 S22: -0.1009 S23: -0.2716 REMARK 3 S31: 0.0469 S32: 0.0813 S33: -0.0117 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 209 B 292 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6620 -3.1730 -34.6510 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.0792 REMARK 3 T33: 0.0519 T12: 0.0179 REMARK 3 T13: 0.0403 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 1.9303 L22: 1.9879 REMARK 3 L33: 1.7707 L12: 0.4789 REMARK 3 L13: -0.0650 L23: -0.0642 REMARK 3 S TENSOR REMARK 3 S11: 0.1135 S12: 0.0913 S13: 0.0212 REMARK 3 S21: -0.0189 S22: -0.0602 S23: 0.0763 REMARK 3 S31: -0.0094 S32: 0.0200 S33: -0.0533 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 210 C 290 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4750 11.0310 -40.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.0572 T22: 0.0799 REMARK 3 T33: 0.0342 T12: -0.0053 REMARK 3 T13: 0.0160 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 2.3087 L22: 2.8585 REMARK 3 L33: 2.9519 L12: 0.7904 REMARK 3 L13: -0.6378 L23: -1.0926 REMARK 3 S TENSOR REMARK 3 S11: 0.0736 S12: -0.2267 S13: -0.2272 REMARK 3 S21: 0.1534 S22: -0.1371 S23: -0.0883 REMARK 3 S31: -0.0759 S32: 0.1915 S33: 0.0635 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 209 D 292 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0210 -12.4700 -54.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0898 REMARK 3 T33: 0.1235 T12: 0.0088 REMARK 3 T13: -0.0203 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.4431 L22: 3.0239 REMARK 3 L33: 2.9077 L12: -0.6727 REMARK 3 L13: 0.7164 L23: -1.0771 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 0.0383 S13: 0.0291 REMARK 3 S21: -0.0446 S22: -0.0765 S23: -0.1444 REMARK 3 S31: 0.1413 S32: 0.2113 S33: 0.0196 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24550 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 68.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3W5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% 4-BUTYROLACTONE, 22.5% PEG 3350, REMARK 280 0.1M MG FORMATE, PH 8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.58250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.45650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.33150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.45650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.58250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.33150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 18.58250 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -48.45650 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 18.58250 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 48.45650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 209 REMARK 465 ALA A 293 REMARK 465 ALA B 293 REMARK 465 GLY C 209 REMARK 465 ILE C 291 REMARK 465 ALA C 292 REMARK 465 ALA C 293 REMARK 465 ALA D 293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 311 O HOH D 320 2.11 REMARK 500 O HOH D 311 O HOH D 339 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 253 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 270 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 238 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 238 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 253 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG B 269 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 269 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 290 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 270 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG C 280 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG C 280 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP D 253 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP D 253 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG D 270 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 280 -62.37 -106.56 REMARK 500 HIS C 278 2.42 81.85 REMARK 500 HIS D 228 -2.17 78.57 REMARK 500 ARG D 280 -80.52 -106.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 210 HIS A 211 33.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 273 O REMARK 620 2 HOH B 437 O 79.5 REMARK 620 3 GLU C 273 O 57.3 23.1 REMARK 620 4 HOH C 324 O 105.0 172.9 162.2 REMARK 620 5 HOH C 341 O 86.2 83.1 88.6 91.6 REMARK 620 6 HOH C 345 O 96.6 98.3 93.8 86.8 177.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 DBREF 5HO5 A 213 292 UNP W6KHH6 W6KHH6_9PROT 213 292 DBREF 5HO5 B 213 292 UNP W6KHH6 W6KHH6_9PROT 213 292 DBREF 5HO5 C 213 292 UNP W6KHH6 W6KHH6_9PROT 213 292 DBREF 5HO5 D 213 292 UNP W6KHH6 W6KHH6_9PROT 213 292 SEQADV 5HO5 GLY A 209 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 SER A 210 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 HIS A 211 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 MET A 212 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 ALA A 293 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 GLY B 209 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 SER B 210 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 HIS B 211 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 MET B 212 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 ALA B 293 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 GLY C 209 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 SER C 210 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 HIS C 211 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 MET C 212 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 ALA C 293 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 GLY D 209 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 SER D 210 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 HIS D 211 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 MET D 212 UNP W6KHH6 EXPRESSION TAG SEQADV 5HO5 ALA D 293 UNP W6KHH6 EXPRESSION TAG SEQRES 1 A 85 GLY SER HIS MET ASN ASP VAL LEU VAL ASP ALA TYR ASN SEQRES 2 A 85 ILE ALA LYS ASP SER GLN HIS VAL HIS GLY VAL HIS TYR SEQRES 3 A 85 ILE ARG GLY ARG ASN VAL GLY GLU ASP VAL HIS LEU ASP SEQRES 4 A 85 ILE ASN ILE TYR VAL ASP ALA ASP LEU LYS VAL PHE GLU SEQRES 5 A 85 SER ASP LEU VAL ALA ASP ALA ILE ARG ARG LYS ILE GLU SEQRES 6 A 85 ALA GLU VAL ASP HIS VAL ARG ASP VAL HIS VAL GLY VAL SEQRES 7 A 85 THR PRO VAL ARG ILE ALA ALA SEQRES 1 B 85 GLY SER HIS MET ASN ASP VAL LEU VAL ASP ALA TYR ASN SEQRES 2 B 85 ILE ALA LYS ASP SER GLN HIS VAL HIS GLY VAL HIS TYR SEQRES 3 B 85 ILE ARG GLY ARG ASN VAL GLY GLU ASP VAL HIS LEU ASP SEQRES 4 B 85 ILE ASN ILE TYR VAL ASP ALA ASP LEU LYS VAL PHE GLU SEQRES 5 B 85 SER ASP LEU VAL ALA ASP ALA ILE ARG ARG LYS ILE GLU SEQRES 6 B 85 ALA GLU VAL ASP HIS VAL ARG ASP VAL HIS VAL GLY VAL SEQRES 7 B 85 THR PRO VAL ARG ILE ALA ALA SEQRES 1 C 85 GLY SER HIS MET ASN ASP VAL LEU VAL ASP ALA TYR ASN SEQRES 2 C 85 ILE ALA LYS ASP SER GLN HIS VAL HIS GLY VAL HIS TYR SEQRES 3 C 85 ILE ARG GLY ARG ASN VAL GLY GLU ASP VAL HIS LEU ASP SEQRES 4 C 85 ILE ASN ILE TYR VAL ASP ALA ASP LEU LYS VAL PHE GLU SEQRES 5 C 85 SER ASP LEU VAL ALA ASP ALA ILE ARG ARG LYS ILE GLU SEQRES 6 C 85 ALA GLU VAL ASP HIS VAL ARG ASP VAL HIS VAL GLY VAL SEQRES 7 C 85 THR PRO VAL ARG ILE ALA ALA SEQRES 1 D 85 GLY SER HIS MET ASN ASP VAL LEU VAL ASP ALA TYR ASN SEQRES 2 D 85 ILE ALA LYS ASP SER GLN HIS VAL HIS GLY VAL HIS TYR SEQRES 3 D 85 ILE ARG GLY ARG ASN VAL GLY GLU ASP VAL HIS LEU ASP SEQRES 4 D 85 ILE ASN ILE TYR VAL ASP ALA ASP LEU LYS VAL PHE GLU SEQRES 5 D 85 SER ASP LEU VAL ALA ASP ALA ILE ARG ARG LYS ILE GLU SEQRES 6 D 85 ALA GLU VAL ASP HIS VAL ARG ASP VAL HIS VAL GLY VAL SEQRES 7 D 85 THR PRO VAL ARG ILE ALA ALA HET MG B 301 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG MG 2+ FORMUL 6 HOH *206(H2 O) HELIX 1 AA1 HIS A 211 ASP A 225 1 15 HELIX 2 AA2 LYS A 257 VAL A 276 1 20 HELIX 3 AA3 HIS B 211 ASP B 225 1 15 HELIX 4 AA4 LYS B 257 VAL B 276 1 20 HELIX 5 AA5 HIS C 211 ASP C 225 1 15 HELIX 6 AA6 LYS C 257 VAL C 276 1 20 HELIX 7 AA7 HIS D 211 ASP D 225 1 15 HELIX 8 AA8 LYS D 257 VAL D 276 1 20 SHEET 1 AA1 3 GLY A 231 VAL A 240 0 SHEET 2 AA1 3 ASP A 243 ASP A 253 -1 O TYR A 251 N GLY A 231 SHEET 3 AA1 3 VAL A 279 VAL A 289 1 O THR A 287 N ILE A 250 SHEET 1 AA2 6 VAL B 279 VAL B 289 0 SHEET 2 AA2 6 ASP B 243 ASP B 253 1 N ILE B 250 O THR B 287 SHEET 3 AA2 6 GLY B 231 VAL B 240 -1 N GLY B 231 O TYR B 251 SHEET 4 AA2 6 GLY C 231 VAL C 240 -1 O ILE C 235 N GLY B 237 SHEET 5 AA2 6 ASP C 243 ASP C 253 -1 O TYR C 251 N GLY C 231 SHEET 6 AA2 6 VAL C 279 VAL C 289 1 O THR C 287 N ILE C 250 SHEET 1 AA3 3 GLY D 231 VAL D 240 0 SHEET 2 AA3 3 ASP D 243 ASP D 253 -1 O TYR D 251 N GLY D 231 SHEET 3 AA3 3 VAL D 279 VAL D 289 1 O ARG D 280 N VAL D 244 LINK O GLU B 273 MG MG B 301 1555 1555 2.28 LINK MG MG B 301 O HOH B 437 1555 1555 2.28 LINK MG MG B 301 O GLU C 273 1655 1555 2.27 LINK MG MG B 301 O HOH C 324 1555 1455 2.26 LINK MG MG B 301 O HOH C 341 1555 1455 2.24 LINK MG MG B 301 O HOH C 345 1555 1455 2.04 SITE 1 AC1 6 GLU B 273 HOH B 437 GLU C 273 HOH C 324 SITE 2 AC1 6 HOH C 341 HOH C 345 CRYST1 37.165 96.663 96.913 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026907 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010319 0.00000