HEADER LYASE 25-JAN-16 5HSI TITLE CRYSTAL STRUCTURE OF TYROSINE DECARBOXYLASE AT 1.73 ANGSTROMS TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-TYROSINE DECARBOXYLASE,TYROSINE DECARBOXYLASE; COMPND 5 EC: 4.1.1.25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS BREVIS; SOURCE 3 ORGANISM_TAXID: 1580; SOURCE 4 GENE: TDC, N624_0219; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS L-TYROSINE DECARBOXYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NI,J.ZHOU,H.ZHU,K.ZHANG REVDAT 3 20-MAR-24 5HSI 1 LINK REVDAT 2 19-FEB-20 5HSI 1 REMARK REVDAT 1 21-SEP-16 5HSI 0 JRNL AUTH H.ZHU,G.XU,K.ZHANG,X.KONG,R.HAN,J.ZHOU,Y.NI JRNL TITL CRYSTAL STRUCTURE OF TYROSINE DECARBOXYLASE AND JRNL TITL 2 IDENTIFICATION OF KEY RESIDUES INVOLVED IN CONFORMATIONAL JRNL TITL 3 SWING AND SUBSTRATE BINDING JRNL REF SCI REP V. 6 27779 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27292129 JRNL DOI 10.1038/SREP27779 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 115238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.9341 - 5.3648 0.99 3982 209 0.1534 0.1814 REMARK 3 2 5.3648 - 4.2643 0.99 3903 192 0.1379 0.1645 REMARK 3 3 4.2643 - 3.7271 0.98 3842 220 0.1320 0.1435 REMARK 3 4 3.7271 - 3.3871 0.98 3839 207 0.1432 0.1953 REMARK 3 5 3.3871 - 3.1448 0.96 3770 179 0.1556 0.1698 REMARK 3 6 3.1448 - 2.9597 0.93 3618 192 0.1621 0.2058 REMARK 3 7 2.9597 - 2.8116 0.90 3533 182 0.1613 0.1985 REMARK 3 8 2.8116 - 2.6894 0.90 3558 179 0.1607 0.1939 REMARK 3 9 2.6894 - 2.5859 0.90 3492 165 0.1618 0.1964 REMARK 3 10 2.5859 - 2.4968 0.89 3532 190 0.1649 0.2090 REMARK 3 11 2.4968 - 2.4188 0.90 3522 172 0.1635 0.1861 REMARK 3 12 2.4188 - 2.3497 0.90 3552 178 0.1627 0.2155 REMARK 3 13 2.3497 - 2.2878 0.91 3531 200 0.1560 0.1904 REMARK 3 14 2.2878 - 2.2321 0.92 3617 194 0.1559 0.1738 REMARK 3 15 2.2321 - 2.1813 0.92 3602 204 0.1572 0.2051 REMARK 3 16 2.1813 - 2.1349 0.92 3567 208 0.1564 0.1981 REMARK 3 17 2.1349 - 2.0923 0.93 3634 217 0.1592 0.2125 REMARK 3 18 2.0923 - 2.0528 0.93 3623 179 0.1583 0.2248 REMARK 3 19 2.0528 - 2.0161 0.94 3624 213 0.1620 0.2129 REMARK 3 20 2.0161 - 1.9820 0.93 3613 194 0.1649 0.1959 REMARK 3 21 1.9820 - 1.9500 0.94 3662 201 0.1620 0.1984 REMARK 3 22 1.9500 - 1.9200 0.94 3631 189 0.1740 0.2124 REMARK 3 23 1.9200 - 1.8918 0.94 3706 194 0.1746 0.2411 REMARK 3 24 1.8918 - 1.8652 0.94 3671 184 0.1748 0.2282 REMARK 3 25 1.8652 - 1.8400 0.94 3668 183 0.1698 0.2307 REMARK 3 26 1.8400 - 1.8161 0.94 3676 194 0.1640 0.1929 REMARK 3 27 1.8161 - 1.7934 0.94 3690 193 0.1710 0.2148 REMARK 3 28 1.7934 - 1.7718 0.95 3710 171 0.1761 0.2264 REMARK 3 29 1.7718 - 1.7512 0.94 3656 201 0.1870 0.2353 REMARK 3 30 1.7512 - 1.7315 0.89 3436 194 0.2019 0.2614 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 9774 REMARK 3 ANGLE : 1.074 13238 REMARK 3 CHIRALITY : 0.074 1404 REMARK 3 PLANARITY : 0.006 1711 REMARK 3 DIHEDRAL : 13.578 3588 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-13; 27-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRF; PHOTON FACTORY REMARK 200 BEAMLINE : BL17U; BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178; 0.97908, 0.96406, REMARK 200 0.97929 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115321 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX V1.9 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1000, MAGNESIUM CHLORIDE, REMARK 280 CACODYLATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 63.08450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 ARG A 6 REMARK 465 THR A 419 REMARK 465 TYR A 420 REMARK 465 VAL A 421 REMARK 465 PHE A 422 REMARK 465 GLU A 423 REMARK 465 LYS A 424 REMARK 465 GLY A 425 REMARK 465 ALA A 426 REMARK 465 ASP A 427 REMARK 465 ILE A 428 REMARK 465 PRO A 429 REMARK 465 ALA A 430 REMARK 465 ASN A 621 REMARK 465 GLN A 622 REMARK 465 LYS A 623 REMARK 465 GLU A 624 REMARK 465 ASN A 625 REMARK 465 VAL A 626 REMARK 465 LEU A 627 REMARK 465 GLU A 628 REMARK 465 HIS A 629 REMARK 465 HIS A 630 REMARK 465 HIS A 631 REMARK 465 HIS A 632 REMARK 465 HIS A 633 REMARK 465 HIS A 634 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 TYR B 46 REMARK 465 ILE B 47 REMARK 465 PRO B 48 REMARK 465 ALA B 418 REMARK 465 THR B 419 REMARK 465 TYR B 420 REMARK 465 VAL B 421 REMARK 465 PHE B 422 REMARK 465 GLU B 423 REMARK 465 LYS B 424 REMARK 465 GLY B 425 REMARK 465 ALA B 426 REMARK 465 ASP B 427 REMARK 465 ILE B 428 REMARK 465 PRO B 429 REMARK 465 ALA B 430 REMARK 465 SER B 619 REMARK 465 VAL B 620 REMARK 465 ASN B 621 REMARK 465 GLN B 622 REMARK 465 LYS B 623 REMARK 465 GLU B 624 REMARK 465 ASN B 625 REMARK 465 VAL B 626 REMARK 465 LEU B 627 REMARK 465 GLU B 628 REMARK 465 HIS B 629 REMARK 465 HIS B 630 REMARK 465 HIS B 631 REMARK 465 HIS B 632 REMARK 465 HIS B 633 REMARK 465 HIS B 634 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 230 O HOH B 801 1.98 REMARK 500 O HOH A 821 O HOH A 1216 2.11 REMARK 500 OE2 GLU A 208 O HOH A 701 2.11 REMARK 500 OE2 GLU B 614 O HOH B 802 2.12 REMARK 500 O LYS A 226 O HOH A 702 2.14 REMARK 500 OE1 GLN B 314 O HOH B 803 2.14 REMARK 500 O HOH B 1049 O HOH B 1269 2.15 REMARK 500 O HOH B 951 O HOH B 1335 2.15 REMARK 500 O HOH B 906 O HOH B 1292 2.15 REMARK 500 O HOH B 1061 O HOH B 1221 2.15 REMARK 500 O HOH B 1246 O HOH B 1267 2.17 REMARK 500 OD1 ASP B 20 O HOH B 804 2.17 REMARK 500 O VAL A 535 OG SER A 538 2.18 REMARK 500 O HOH A 706 O HOH A 1172 2.18 REMARK 500 OD2 ASP A 50 O HOH A 703 2.18 REMARK 500 O HOH B 1155 O HOH B 1351 2.19 REMARK 500 O HOH A 793 O HOH B 852 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 88 C - N - CA ANGL. DEV. = 13.4 DEGREES REMARK 500 PRO A 88 C - N - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 19.92 59.22 REMARK 500 SER A 49 110.34 63.30 REMARK 500 ASP A 50 -167.58 85.96 REMARK 500 VAL A 87 59.75 -114.56 REMARK 500 PRO A 88 138.78 14.43 REMARK 500 SER A 127 48.14 -156.55 REMARK 500 TYR A 149 39.66 -142.25 REMARK 500 ASN A 183 83.41 -150.88 REMARK 500 LYS A 392 -105.23 -93.99 REMARK 500 PHE A 417 -118.17 -110.61 REMARK 500 PHE A 503 -113.70 -136.87 REMARK 500 ALA A 532 50.01 -96.95 REMARK 500 SER A 619 18.54 -68.98 REMARK 500 SER B 127 58.03 -159.01 REMARK 500 ASN B 183 90.00 -152.27 REMARK 500 LYS B 392 -101.51 -94.91 REMARK 500 PHE B 503 -114.03 -138.99 REMARK 500 ALA B 532 43.84 -106.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1442 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 822 O REMARK 620 2 HOH A 946 O 86.2 REMARK 620 3 HOH A1128 O 87.2 83.6 REMARK 620 4 HOH B 829 O 89.4 174.9 93.6 REMARK 620 5 HOH B1148 O 90.4 91.7 174.9 90.9 REMARK 620 6 HOH B1387 O 172.9 92.8 85.7 91.3 96.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HSJ RELATED DB: PDB DBREF 5HSI A 1 626 UNP J7GQ11 J7GQ11_LACBR 1 626 DBREF 5HSI B 1 626 UNP J7GQ11 J7GQ11_LACBR 1 626 SEQADV 5HSI LEU A 627 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI GLU A 628 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS A 629 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS A 630 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS A 631 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS A 632 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS A 633 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS A 634 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI LEU B 627 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI GLU B 628 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS B 629 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS B 630 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS B 631 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS B 632 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS B 633 UNP J7GQ11 EXPRESSION TAG SEQADV 5HSI HIS B 634 UNP J7GQ11 EXPRESSION TAG SEQRES 1 A 634 MET GLU LYS SER ASN ARG SER LEU LYS ASP LEU ASP LEU SEQRES 2 A 634 ASN ALA LEU PHE ILE GLY ASP LYS ALA GLU ASN GLY GLN SEQRES 3 A 634 LEU TYR LYS ASP LEU LEU ASN LYS LEU VAL ASP GLU HIS SEQRES 4 A 634 LEU GLY TRP ARG LYS ASN TYR ILE PRO SER ASP PRO ASN SEQRES 5 A 634 MET ILE GLY PRO GLU ASP GLN ASN SER PRO ALA PHE LYS SEQRES 6 A 634 LYS THR VAL GLY HIS MET LYS THR VAL LEU ASP GLN LEU SEQRES 7 A 634 SER GLU ARG ILE ARG THR GLU SER VAL PRO TRP HIS SER SEQRES 8 A 634 ALA GLY ARG TYR TRP GLY HIS MET ASN SER GLU THR LEU SEQRES 9 A 634 MET PRO ALA LEU LEU ALA TYR ASN TYR ALA MET LEU TRP SEQRES 10 A 634 ASN GLY ASN ASN VAL ALA TYR GLU SER SER PRO ALA THR SEQRES 11 A 634 SER GLN MET GLU GLU GLU VAL GLY GLN GLU PHE ALA ARG SEQRES 12 A 634 LEU MET GLY TYR ASP TYR GLY TRP GLY HIS ILE VAL ALA SEQRES 13 A 634 ASP GLY SER LEU ALA ASN LEU GLU GLY LEU TRP TYR ALA SEQRES 14 A 634 ARG ASN ILE LYS SER LEU PRO PHE ALA MET LYS GLU VAL SEQRES 15 A 634 ASN PRO GLU LEU VAL ALA GLY LYS SER ASP TRP GLU LEU SEQRES 16 A 634 LEU ASN MET PRO THR LYS GLU ILE MET ASP LEU LEU GLU SEQRES 17 A 634 ASN ALA GLY SER GLN ILE ASP GLU VAL LYS LYS ARG SER SEQRES 18 A 634 ALA ARG SER GLY LYS ASN LEU GLN ARG LEU GLY LYS TRP SEQRES 19 A 634 LEU VAL PRO GLN THR LYS HIS TYR SER TRP MET LYS ALA SEQRES 20 A 634 ALA ASP ILE ILE GLY ILE GLY LEU ASP GLN VAL VAL PRO SEQRES 21 A 634 VAL PRO ILE ASP SER ASN TYR ARG MET ASP ILE GLN ALA SEQRES 22 A 634 LEU GLU SER ILE ILE ARG LYS TYR ALA ALA GLU LYS THR SEQRES 23 A 634 PRO ILE LEU GLY VAL VAL GLY VAL ALA GLY SER THR GLU SEQRES 24 A 634 GLU GLY ALA VAL ASP GLY ILE ASP LYS ILE VAL ALA LEU SEQRES 25 A 634 ARG GLN LYS LEU GLN LYS GLU GLY ILE TYR PHE TYR LEU SEQRES 26 A 634 HIS VAL ASP ALA ALA TYR GLY GLY TYR ALA ARG ALA LEU SEQRES 27 A 634 PHE LEU ASP GLU ASP ASP GLN PHE ILE PRO TYR LYS ASN SEQRES 28 A 634 LEU GLN LYS VAL HIS ALA GLU ASN HIS VAL PHE THR GLU SEQRES 29 A 634 ASP LYS GLU TYR ILE LYS PRO GLU VAL TYR ALA ALA TYR SEQRES 30 A 634 LYS ALA PHE ASP GLN ALA GLU SER ILE THR ILE ASP PRO SEQRES 31 A 634 HIS LYS MET GLY TYR VAL PRO TYR SER ALA GLY GLY ILE SEQRES 32 A 634 VAL ILE GLN ASP ILE ARG MET ARG ASP THR ILE SER TYR SEQRES 33 A 634 PHE ALA THR TYR VAL PHE GLU LYS GLY ALA ASP ILE PRO SEQRES 34 A 634 ALA LEU LEU GLY ALA TYR ILE LEU GLU GLY SER LYS ALA SEQRES 35 A 634 GLY ALA THR ALA ALA SER VAL TRP ALA ALA HIS HIS THR SEQRES 36 A 634 LEU PRO LEU ASN VAL THR GLY TYR GLY LYS LEU GLU GLY SEQRES 37 A 634 ALA SER ILE GLU GLY ALA HIS ARG TYR TYR ASP PHE LEU SEQRES 38 A 634 LYS ASN LEU LYS PHE GLU VAL ALA GLY LYS ARG ILE SER SEQRES 39 A 634 VAL HIS PRO LEU ILE SER PRO ASP PHE ASN MET VAL ASP SEQRES 40 A 634 TYR VAL LEU LYS GLU ASP GLY ASN ASP ASP LEU ILE GLU SEQRES 41 A 634 MET ASN ARG LEU ASN HIS ALA PHE TYR GLU GLN ALA SER SEQRES 42 A 634 TYR VAL LYS GLY SER LEU TYR GLY LYS GLU TYR ILE VAL SEQRES 43 A 634 SER HIS THR ASP PHE ALA ILE PRO ASP TYR GLY ASP SER SEQRES 44 A 634 PRO LEU ALA PHE VAL GLU SER LEU GLY PHE SER GLU VAL SEQRES 45 A 634 GLU TRP ARG HIS ALA GLY LYS VAL THR ILE ILE ARG ALA SEQRES 46 A 634 SER VAL MET THR PRO TYR MET ASN GLN ARG GLU ASN PHE SEQRES 47 A 634 ASP TYR PHE ALA PRO ARG ILE LYS LYS ALA ILE GLN ALA SEQRES 48 A 634 ASP LEU GLU LYS VAL TYR ALA SER VAL ASN GLN LYS GLU SEQRES 49 A 634 ASN VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 634 MET GLU LYS SER ASN ARG SER LEU LYS ASP LEU ASP LEU SEQRES 2 B 634 ASN ALA LEU PHE ILE GLY ASP LYS ALA GLU ASN GLY GLN SEQRES 3 B 634 LEU TYR LYS ASP LEU LEU ASN LYS LEU VAL ASP GLU HIS SEQRES 4 B 634 LEU GLY TRP ARG LYS ASN TYR ILE PRO SER ASP PRO ASN SEQRES 5 B 634 MET ILE GLY PRO GLU ASP GLN ASN SER PRO ALA PHE LYS SEQRES 6 B 634 LYS THR VAL GLY HIS MET LYS THR VAL LEU ASP GLN LEU SEQRES 7 B 634 SER GLU ARG ILE ARG THR GLU SER VAL PRO TRP HIS SER SEQRES 8 B 634 ALA GLY ARG TYR TRP GLY HIS MET ASN SER GLU THR LEU SEQRES 9 B 634 MET PRO ALA LEU LEU ALA TYR ASN TYR ALA MET LEU TRP SEQRES 10 B 634 ASN GLY ASN ASN VAL ALA TYR GLU SER SER PRO ALA THR SEQRES 11 B 634 SER GLN MET GLU GLU GLU VAL GLY GLN GLU PHE ALA ARG SEQRES 12 B 634 LEU MET GLY TYR ASP TYR GLY TRP GLY HIS ILE VAL ALA SEQRES 13 B 634 ASP GLY SER LEU ALA ASN LEU GLU GLY LEU TRP TYR ALA SEQRES 14 B 634 ARG ASN ILE LYS SER LEU PRO PHE ALA MET LYS GLU VAL SEQRES 15 B 634 ASN PRO GLU LEU VAL ALA GLY LYS SER ASP TRP GLU LEU SEQRES 16 B 634 LEU ASN MET PRO THR LYS GLU ILE MET ASP LEU LEU GLU SEQRES 17 B 634 ASN ALA GLY SER GLN ILE ASP GLU VAL LYS LYS ARG SER SEQRES 18 B 634 ALA ARG SER GLY LYS ASN LEU GLN ARG LEU GLY LYS TRP SEQRES 19 B 634 LEU VAL PRO GLN THR LYS HIS TYR SER TRP MET LYS ALA SEQRES 20 B 634 ALA ASP ILE ILE GLY ILE GLY LEU ASP GLN VAL VAL PRO SEQRES 21 B 634 VAL PRO ILE ASP SER ASN TYR ARG MET ASP ILE GLN ALA SEQRES 22 B 634 LEU GLU SER ILE ILE ARG LYS TYR ALA ALA GLU LYS THR SEQRES 23 B 634 PRO ILE LEU GLY VAL VAL GLY VAL ALA GLY SER THR GLU SEQRES 24 B 634 GLU GLY ALA VAL ASP GLY ILE ASP LYS ILE VAL ALA LEU SEQRES 25 B 634 ARG GLN LYS LEU GLN LYS GLU GLY ILE TYR PHE TYR LEU SEQRES 26 B 634 HIS VAL ASP ALA ALA TYR GLY GLY TYR ALA ARG ALA LEU SEQRES 27 B 634 PHE LEU ASP GLU ASP ASP GLN PHE ILE PRO TYR LYS ASN SEQRES 28 B 634 LEU GLN LYS VAL HIS ALA GLU ASN HIS VAL PHE THR GLU SEQRES 29 B 634 ASP LYS GLU TYR ILE LYS PRO GLU VAL TYR ALA ALA TYR SEQRES 30 B 634 LYS ALA PHE ASP GLN ALA GLU SER ILE THR ILE ASP PRO SEQRES 31 B 634 HIS LYS MET GLY TYR VAL PRO TYR SER ALA GLY GLY ILE SEQRES 32 B 634 VAL ILE GLN ASP ILE ARG MET ARG ASP THR ILE SER TYR SEQRES 33 B 634 PHE ALA THR TYR VAL PHE GLU LYS GLY ALA ASP ILE PRO SEQRES 34 B 634 ALA LEU LEU GLY ALA TYR ILE LEU GLU GLY SER LYS ALA SEQRES 35 B 634 GLY ALA THR ALA ALA SER VAL TRP ALA ALA HIS HIS THR SEQRES 36 B 634 LEU PRO LEU ASN VAL THR GLY TYR GLY LYS LEU GLU GLY SEQRES 37 B 634 ALA SER ILE GLU GLY ALA HIS ARG TYR TYR ASP PHE LEU SEQRES 38 B 634 LYS ASN LEU LYS PHE GLU VAL ALA GLY LYS ARG ILE SER SEQRES 39 B 634 VAL HIS PRO LEU ILE SER PRO ASP PHE ASN MET VAL ASP SEQRES 40 B 634 TYR VAL LEU LYS GLU ASP GLY ASN ASP ASP LEU ILE GLU SEQRES 41 B 634 MET ASN ARG LEU ASN HIS ALA PHE TYR GLU GLN ALA SER SEQRES 42 B 634 TYR VAL LYS GLY SER LEU TYR GLY LYS GLU TYR ILE VAL SEQRES 43 B 634 SER HIS THR ASP PHE ALA ILE PRO ASP TYR GLY ASP SER SEQRES 44 B 634 PRO LEU ALA PHE VAL GLU SER LEU GLY PHE SER GLU VAL SEQRES 45 B 634 GLU TRP ARG HIS ALA GLY LYS VAL THR ILE ILE ARG ALA SEQRES 46 B 634 SER VAL MET THR PRO TYR MET ASN GLN ARG GLU ASN PHE SEQRES 47 B 634 ASP TYR PHE ALA PRO ARG ILE LYS LYS ALA ILE GLN ALA SEQRES 48 B 634 ASP LEU GLU LYS VAL TYR ALA SER VAL ASN GLN LYS GLU SEQRES 49 B 634 ASN VAL LEU GLU HIS HIS HIS HIS HIS HIS HET MG B 701 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *1201(H2 O) HELIX 1 AA1 ASP A 12 PHE A 17 5 6 HELIX 2 AA2 ASN A 24 TYR A 46 1 23 HELIX 3 AA3 GLY A 55 ASN A 60 1 6 HELIX 4 AA4 SER A 61 SER A 86 1 26 HELIX 5 AA5 LEU A 104 LEU A 116 1 13 HELIX 6 AA6 ALA A 123 SER A 126 5 4 HELIX 7 AA7 SER A 127 MET A 145 1 19 HELIX 8 AA8 ASP A 157 ASN A 183 1 27 HELIX 9 AA9 PRO A 184 ALA A 188 5 5 HELIX 10 AB1 SER A 191 LEU A 196 1 6 HELIX 11 AB2 PRO A 199 ALA A 210 1 12 HELIX 12 AB3 GLN A 213 ARG A 220 1 8 HELIX 13 AB4 SER A 221 GLY A 225 5 5 HELIX 14 AB5 ASN A 227 GLY A 232 5 6 HELIX 15 AB6 LYS A 240 ILE A 251 1 12 HELIX 16 AB7 GLY A 254 ASP A 256 5 3 HELIX 17 AB8 ASP A 270 GLU A 284 1 15 HELIX 18 AB9 GLY A 305 LYS A 318 1 14 HELIX 19 AC1 GLY A 332 LEU A 340 5 9 HELIX 20 AC2 PRO A 348 LYS A 350 5 3 HELIX 21 AC3 ASN A 351 ASN A 359 1 9 HELIX 22 AC4 LYS A 370 ALA A 379 1 10 HELIX 23 AC5 PHE A 380 ALA A 383 5 4 HELIX 24 AC6 ASP A 407 ILE A 414 5 8 HELIX 25 AC7 LEU A 431 ILE A 436 5 6 HELIX 26 AC8 ALA A 442 LEU A 456 1 15 HELIX 27 AC9 GLY A 462 LYS A 482 1 21 HELIX 28 AD1 ASP A 517 ALA A 532 1 16 HELIX 29 AD2 ILE A 553 GLY A 557 1 5 HELIX 30 AD3 PRO A 560 LEU A 567 1 8 HELIX 31 AD4 SER A 570 GLY A 578 1 9 HELIX 32 AD5 GLN A 594 SER A 619 1 26 HELIX 33 AD6 ASP B 12 PHE B 17 5 6 HELIX 34 AD7 ASN B 24 ASN B 45 1 22 HELIX 35 AD8 GLY B 55 ASN B 60 1 6 HELIX 36 AD9 SER B 61 GLU B 85 1 25 HELIX 37 AE1 LEU B 104 MET B 115 1 12 HELIX 38 AE2 ALA B 123 SER B 126 5 4 HELIX 39 AE3 SER B 127 MET B 145 1 19 HELIX 40 AE4 ASP B 157 ASN B 183 1 27 HELIX 41 AE5 PRO B 184 ALA B 188 5 5 HELIX 42 AE6 SER B 191 LEU B 196 1 6 HELIX 43 AE7 PRO B 199 ALA B 210 1 12 HELIX 44 AE8 GLN B 213 ARG B 220 1 8 HELIX 45 AE9 SER B 221 GLY B 225 5 5 HELIX 46 AF1 LEU B 228 GLY B 232 5 5 HELIX 47 AF2 LYS B 240 GLY B 252 1 13 HELIX 48 AF3 GLY B 254 ASP B 256 5 3 HELIX 49 AF4 ASP B 270 GLU B 284 1 15 HELIX 50 AF5 GLY B 305 LYS B 318 1 14 HELIX 51 AF6 GLY B 332 LEU B 340 5 9 HELIX 52 AF7 PRO B 348 LYS B 350 5 3 HELIX 53 AF8 ASN B 351 ASN B 359 1 9 HELIX 54 AF9 LYS B 370 ALA B 379 1 10 HELIX 55 AG1 PHE B 380 ALA B 383 5 4 HELIX 56 AG2 ASP B 407 ILE B 414 5 8 HELIX 57 AG3 LEU B 431 ILE B 436 5 6 HELIX 58 AG4 ALA B 442 LEU B 456 1 15 HELIX 59 AG5 GLY B 462 LYS B 482 1 21 HELIX 60 AG6 ASP B 517 ALA B 532 1 16 HELIX 61 AG7 ILE B 553 GLY B 557 1 5 HELIX 62 AG8 PRO B 560 LEU B 567 1 8 HELIX 63 AG9 SER B 570 GLY B 578 1 9 HELIX 64 AH1 GLN B 594 ALA B 618 1 25 SHEET 1 AA1 6 TYR A 95 TRP A 96 0 SHEET 2 AA1 6 ILE A 545 ALA A 552 1 O ILE A 545 N TRP A 96 SHEET 3 AA1 6 LYS A 579 SER A 586 -1 O ILE A 582 N THR A 549 SHEET 4 AA1 6 MET A 505 GLU A 512 -1 N TYR A 508 O ILE A 583 SHEET 5 AA1 6 LYS A 491 PRO A 497 -1 N HIS A 496 O VAL A 509 SHEET 6 AA1 6 LYS A 485 VAL A 488 -1 N PHE A 486 O ILE A 493 SHEET 1 AA2 7 TRP A 151 VAL A 155 0 SHEET 2 AA2 7 GLY A 401 ILE A 405 -1 O ILE A 405 N TRP A 151 SHEET 3 AA2 7 SER A 385 THR A 387 -1 N ILE A 386 O VAL A 404 SHEET 4 AA2 7 TYR A 324 ASP A 328 1 N VAL A 327 O SER A 385 SHEET 5 AA2 7 ILE A 288 VAL A 294 1 N GLY A 293 O ASP A 328 SHEET 6 AA2 7 LYS A 233 PRO A 237 1 N LEU A 235 O VAL A 292 SHEET 7 AA2 7 VAL A 258 VAL A 261 1 O VAL A 261 N VAL A 236 SHEET 1 AA3 6 TYR B 95 TRP B 96 0 SHEET 2 AA3 6 ILE B 545 ALA B 552 1 O ILE B 545 N TRP B 96 SHEET 3 AA3 6 LYS B 579 SER B 586 -1 O VAL B 580 N PHE B 551 SHEET 4 AA3 6 MET B 505 GLU B 512 -1 N TYR B 508 O ILE B 583 SHEET 5 AA3 6 LYS B 491 PRO B 497 -1 N HIS B 496 O VAL B 509 SHEET 6 AA3 6 LYS B 485 VAL B 488 -1 N PHE B 486 O ILE B 493 SHEET 1 AA4 7 TRP B 151 VAL B 155 0 SHEET 2 AA4 7 GLY B 401 ILE B 405 -1 O GLY B 401 N VAL B 155 SHEET 3 AA4 7 SER B 385 THR B 387 -1 N ILE B 386 O VAL B 404 SHEET 4 AA4 7 TYR B 324 ASP B 328 1 N VAL B 327 O SER B 385 SHEET 5 AA4 7 ILE B 288 VAL B 294 1 N GLY B 293 O ASP B 328 SHEET 6 AA4 7 LYS B 233 PRO B 237 1 N LEU B 235 O GLY B 290 SHEET 7 AA4 7 VAL B 258 VAL B 261 1 O VAL B 261 N VAL B 236 LINK O HOH A 822 MG MG B 701 1455 1555 2.05 LINK O HOH A 946 MG MG B 701 1455 1555 2.19 LINK O HOH A1128 MG MG B 701 1455 1555 2.04 LINK MG MG B 701 O HOH B 829 1555 1555 2.16 LINK MG MG B 701 O HOH B1148 1555 1555 1.96 LINK MG MG B 701 O HOH B1387 1555 1555 2.04 CISPEP 1 SER A 49 ASP A 50 0 10.08 CISPEP 2 ASP A 50 PRO A 51 0 10.75 CISPEP 3 TYR A 398 SER A 399 0 -2.57 CISPEP 4 TYR B 398 SER B 399 0 -4.03 SITE 1 AC1 6 HOH A 822 HOH A 946 HOH A1128 HOH B 829 SITE 2 AC1 6 HOH B1148 HOH B1387 CRYST1 61.787 126.169 82.728 90.00 109.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016185 0.000000 0.005855 0.00000 SCALE2 0.000000 0.007926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012855 0.00000