HEADER HYDROLASE 26-JAN-16 5HSW TITLE KSHV SOX RNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF 37; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'- COMPND 7 R(P*UP*CP*UP*UP*GP*AP*AP*GP*CP*AP*GP*CP*UP*UP*CP*CP*AP*G)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8 TYPE M; SOURCE 3 ORGANISM_TAXID: 435895; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; SOURCE 9 ORGANISM_TAXID: 37296 KEYWDS KSHV, EXONUCLEASE, ENDONUCLEASE, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.E.BARRETT REVDAT 5 10-JAN-24 5HSW 1 REMARK REVDAT 4 17-MAY-17 5HSW 1 JRNL REVDAT 3 15-FEB-17 5HSW 1 JRNL REVDAT 2 08-FEB-17 5HSW 1 JRNL REVDAT 1 01-FEB-17 5HSW 0 JRNL AUTH H.LEE,A.O.M.PATSCHULL,C.BAGNERIS,H.RYAN,C.M.SANDERSON, JRNL AUTH 2 B.EBRAHIMI,I.NOBELI,T.E.BARRETT JRNL TITL KSHV SOX MEDIATED HOST SHUTOFF: THE MOLECULAR MECHANISM JRNL TITL 2 UNDERLYING MRNA TRANSCRIPT PROCESSING. JRNL REF NUCLEIC ACIDS RES. V. 45 4756 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28132029 JRNL DOI 10.1093/NAR/GKW1340 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 454 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2629 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2265 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2496 REMARK 3 BIN R VALUE (WORKING SET) : 0.2214 REMARK 3 BIN FREE R VALUE : 0.3172 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3232 REMARK 3 NUCLEIC ACID ATOMS : 380 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -21.76490 REMARK 3 B22 (A**2) : -3.03710 REMARK 3 B33 (A**2) : 24.80200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 14.77590 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.450 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.524 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.898 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3743 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5175 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1105 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 59 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 518 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3743 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 516 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4141 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.04 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.58 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 31.5075 -12.9032 98.8108 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: -0.2673 REMARK 3 T33: -0.3202 T12: 0.0224 REMARK 3 T13: -0.0221 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.6189 L22: 2.5652 REMARK 3 L33: 5.3450 L12: 0.2424 REMARK 3 L13: -0.4382 L23: -1.2527 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.0671 S13: 0.0587 REMARK 3 S21: -0.0131 S22: 0.0869 S23: 0.1490 REMARK 3 S31: -0.0730 S32: -0.0948 S33: -0.0734 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 13.9169 -1.9524 81.3492 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.1282 REMARK 3 T33: 0.0692 T12: 0.0311 REMARK 3 T13: -0.0216 T23: -0.0583 REMARK 3 L TENSOR REMARK 3 L11: 0.2936 L22: 0.0000 REMARK 3 L33: 0.0075 L12: -4.9189 REMARK 3 L13: 2.1494 L23: -0.1731 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: 0.0884 S13: 0.1502 REMARK 3 S21: -0.0900 S22: 0.0281 S23: 0.0568 REMARK 3 S31: -0.0813 S32: -0.0607 S33: -0.0228 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9408 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3POV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE, 0.1 M MES, PH REMARK 280 6.5, 10% W/V PEG 10,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 99.10000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 99.10000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 TYR A 15 REMARK 465 LEU A 16 REMARK 465 VAL A 17 REMARK 465 ASP A 18 REMARK 465 THR A 19 REMARK 465 LEU A 20 REMARK 465 ASP A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 THR A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 ASP A 27 REMARK 465 GLN A 28 REMARK 465 GLN A 29 REMARK 465 THR A 157 REMARK 465 SER A 158 REMARK 465 LYS A 159 REMARK 465 TRP A 165 REMARK 465 PRO A 166 REMARK 465 ILE A 167 REMARK 465 THR A 168 REMARK 465 ASN A 169 REMARK 465 ASN A 170 REMARK 465 HIS A 171 REMARK 465 PHE A 172 REMARK 465 VAL A 173 REMARK 465 ALA A 174 REMARK 465 GLY A 175 REMARK 465 GLU A 231 REMARK 465 PRO A 315 REMARK 465 ARG A 316 REMARK 465 LYS A 317 REMARK 465 LYS A 318 REMARK 465 ARG A 319 REMARK 465 LYS A 320 REMARK 465 LEU A 321 REMARK 465 THR A 322 REMARK 465 PRO A 323 REMARK 465 LEU A 390 REMARK 465 ASP A 391 REMARK 465 SER A 392 REMARK 465 GLY A 393 REMARK 465 ILE A 394 REMARK 465 PRO A 395 REMARK 465 ARG A 396 REMARK 465 LEU A 397 REMARK 465 GLY A 398 REMARK 465 VAL A 482 REMARK 465 PRO A 483 REMARK 465 HIS A 484 REMARK 465 SER A 485 REMARK 465 PRO A 486 REMARK 465 G B 1 REMARK 465 A B 2 REMARK 465 G B 6 REMARK 465 A B 7 REMARK 465 G B 8 REMARK 465 C B 9 REMARK 465 C B 10 REMARK 465 A B 11 REMARK 465 U B 12 REMARK 465 A B 19 REMARK 465 A B 29 REMARK 465 U B 30 REMARK 465 C B 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 6 OG1 CG2 REMARK 470 LEU A 10 CG CD1 CD2 REMARK 470 ASP A 14 CG OD1 OD2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 LEU A 41 CG CD1 CD2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ASP A 89 CG OD1 OD2 REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 TRP A 150 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 150 CZ3 CH2 REMARK 470 GLN A 155 CG CD OE1 NE2 REMARK 470 ASN A 156 CG OD1 ND2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 ASP A 229 CG OD1 OD2 REMARK 470 THR A 230 OG1 CG2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 234 CG CD1 CD2 REMARK 470 GLN A 235 CG CD OE1 NE2 REMARK 470 ASN A 239 CG OD1 ND2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 LEU A 324 CG CD1 CD2 REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 352 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 354 CG CD OE1 NE2 REMARK 470 GLU A 385 CG CD OE1 OE2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 LEU A 427 CG CD1 CD2 REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 450 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 451 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 462 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 465 CG CD CE NZ REMARK 470 ASP A 466 CG OD1 OD2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 TYR A 477 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 481 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 34 33.85 -89.36 REMARK 500 GLN A 129 -60.68 -14.57 REMARK 500 SER A 130 43.33 -154.89 REMARK 500 ALA A 178 1.15 -62.54 REMARK 500 CYS A 183 -70.41 -130.59 REMARK 500 ASN A 213 -39.24 -132.32 REMARK 500 ARG A 233 -168.13 60.34 REMARK 500 LYS A 255 77.26 -69.30 REMARK 500 ASP A 259 126.57 -35.74 REMARK 500 ALA A 271 73.59 -160.36 REMARK 500 LEU A 294 51.40 -101.24 REMARK 500 LYS A 296 7.17 -49.81 REMARK 500 LEU A 297 128.29 81.98 REMARK 500 PRO A 298 -158.03 -95.72 REMARK 500 GLU A 300 23.38 -70.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 501 DBREF 5HSW A 1 486 UNP P88925 P88925_HHV8 1 486 DBREF 5HSW B 1 31 PDB 5HSW 5HSW 1 31 SEQADV 5HSW GLY A -1 UNP P88925 EXPRESSION TAG SEQADV 5HSW ALA A 0 UNP P88925 EXPRESSION TAG SEQADV 5HSW SER A 244 UNP P88925 GLU 244 ENGINEERED MUTATION SEQRES 1 A 488 GLY ALA MET GLU ALA THR PRO THR PRO ALA ASP LEU PHE SEQRES 2 A 488 SER GLU ASP TYR LEU VAL ASP THR LEU ASP GLY LEU THR SEQRES 3 A 488 VAL ASP ASP GLN GLN ALA VAL LEU ALA SER LEU SER PHE SEQRES 4 A 488 SER LYS PHE LEU LYS HIS ALA LYS VAL ARG ASP TRP CYS SEQRES 5 A 488 ALA GLN ALA LYS ILE GLN PRO SER MET PRO ALA LEU ARG SEQRES 6 A 488 MET ALA TYR ASN TYR PHE LEU PHE SER LYS VAL GLY GLU SEQRES 7 A 488 PHE ILE GLY SER GLU ASP VAL CYS ASN PHE PHE VAL ASP SEQRES 8 A 488 ARG VAL PHE GLY GLY VAL ARG LEU LEU ASP VAL ALA SER SEQRES 9 A 488 VAL TYR ALA ALA CYS SER GLN MET ASN ALA HIS GLN ARG SEQRES 10 A 488 HIS HIS ILE CYS CYS LEU VAL GLU ARG ALA THR SER SER SEQRES 11 A 488 GLN SER LEU ASN PRO VAL TRP ASP ALA LEU ARG ASP GLY SEQRES 12 A 488 ILE ILE SER SER SER LYS PHE HIS TRP ALA VAL LYS GLN SEQRES 13 A 488 GLN ASN THR SER LYS LYS ILE PHE SER PRO TRP PRO ILE SEQRES 14 A 488 THR ASN ASN HIS PHE VAL ALA GLY PRO LEU ALA PHE GLY SEQRES 15 A 488 LEU ARG CYS GLU GLU VAL VAL LYS THR LEU LEU ALA THR SEQRES 16 A 488 LEU LEU HIS PRO ASP GLU THR ASN CYS LEU ASP TYR GLY SEQRES 17 A 488 PHE MET GLN SER PRO GLN ASN GLY ILE PHE GLY VAL SER SEQRES 18 A 488 LEU ASP PHE ALA ALA ASN VAL LYS THR ASP THR GLU GLY SEQRES 19 A 488 ARG LEU GLN PHE ASP PRO ASN CYS LYS VAL TYR SER ILE SEQRES 20 A 488 LYS CYS ARG PHE LYS TYR THR PHE ALA LYS MET GLU CYS SEQRES 21 A 488 ASP PRO ILE TYR ALA ALA TYR GLN ARG LEU TYR GLU ALA SEQRES 22 A 488 PRO GLY LYS LEU ALA LEU LYS ASP PHE PHE TYR SER ILE SEQRES 23 A 488 SER LYS PRO ALA VAL GLU TYR VAL GLY LEU GLY LYS LEU SEQRES 24 A 488 PRO SER GLU SER ASP TYR LEU VAL ALA TYR ASP GLN GLU SEQRES 25 A 488 TRP GLU ALA CYS PRO ARG LYS LYS ARG LYS LEU THR PRO SEQRES 26 A 488 LEU HIS ASN LEU ILE ARG GLU CYS ILE LEU HIS ASN SER SEQRES 27 A 488 THR THR GLU SER ASP VAL TYR VAL LEU THR ASP PRO GLN SEQRES 28 A 488 ASP THR ARG GLY GLN ILE SER ILE LYS ALA ARG PHE LYS SEQRES 29 A 488 ALA ASN LEU PHE VAL ASN VAL ARG HIS SER TYR PHE TYR SEQRES 30 A 488 GLN VAL LEU LEU GLN SER SER ILE VAL GLU GLU TYR ILE SEQRES 31 A 488 GLY LEU ASP SER GLY ILE PRO ARG LEU GLY SER PRO LYS SEQRES 32 A 488 TYR TYR ILE ALA THR GLY PHE PHE ARG LYS ARG GLY TYR SEQRES 33 A 488 GLN ASP PRO VAL ASN CYS THR ILE GLY GLY ASP ALA LEU SEQRES 34 A 488 ASP PRO HIS VAL GLU ILE PRO THR LEU LEU ILE VAL THR SEQRES 35 A 488 PRO VAL TYR PHE PRO ARG GLY ALA LYS HIS ARG LEU LEU SEQRES 36 A 488 HIS GLN ALA ALA ASN PHE TRP SER ARG SER ALA LYS ASP SEQRES 37 A 488 THR PHE PRO TYR ILE LYS TRP ASP PHE SER TYR LEU SER SEQRES 38 A 488 ALA ASN VAL PRO HIS SER PRO SEQRES 1 B 31 G A U C U G A G C C A U U SEQRES 2 B 31 G A A G C A A G C U U C C SEQRES 3 B 31 A G A U C HET ACT A 501 4 HETNAM ACT ACETATE ION FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *9(H2 O) HELIX 1 AA1 SER A 36 HIS A 43 1 8 HELIX 2 AA2 HIS A 43 ALA A 51 1 9 HELIX 3 AA3 PRO A 60 ILE A 78 1 19 HELIX 4 AA4 GLU A 81 ARG A 90 1 10 HELIX 5 AA5 ASP A 99 GLN A 109 1 11 HELIX 6 AA6 ASN A 111 THR A 126 1 16 HELIX 7 AA7 PRO A 133 ASP A 140 1 8 HELIX 8 AA8 LYS A 147 GLN A 154 1 8 HELIX 9 AA9 CYS A 183 LEU A 195 1 13 HELIX 10 AB1 PHE A 249 THR A 252 5 4 HELIX 11 AB2 ASP A 259 GLU A 270 1 12 HELIX 12 AB3 GLY A 273 TYR A 282 1 10 HELIX 13 AB4 ASP A 308 GLU A 312 5 5 HELIX 14 AB5 HIS A 325 SER A 336 1 12 HELIX 15 AB6 HIS A 371 GLY A 389 1 19 HELIX 16 AB7 PRO A 445 PHE A 468 1 24 HELIX 17 AB8 TYR A 477 ASN A 481 5 5 SHEET 1 AA1 3 ILE A 143 SER A 144 0 SHEET 2 AA1 3 PHE A 216 VAL A 218 1 O GLY A 217 N ILE A 143 SHEET 3 AA1 3 MET A 208 GLN A 209 -1 N MET A 208 O VAL A 218 SHEET 1 AA2 7 ASN A 201 CYS A 202 0 SHEET 2 AA2 7 PHE A 222 ALA A 224 -1 O ALA A 223 N CYS A 202 SHEET 3 AA2 7 LYS A 241 CYS A 247 -1 O TYR A 243 N PHE A 222 SHEET 4 AA2 7 LYS A 401 ARG A 410 1 O TYR A 403 N SER A 244 SHEET 5 AA2 7 ILE A 433 VAL A 442 -1 O THR A 435 N PHE A 408 SHEET 6 AA2 7 SER A 340 LEU A 345 -1 N TYR A 343 O LEU A 437 SHEET 7 AA2 7 ILE A 357 ALA A 363 -1 O ALA A 359 N VAL A 344 SHEET 1 AA3 2 LYS A 227 THR A 228 0 SHEET 2 AA3 2 LEU A 234 GLN A 235 -1 O GLN A 235 N LYS A 227 SHEET 1 AA4 2 LEU A 304 VAL A 305 0 SHEET 2 AA4 2 PHE A 366 VAL A 367 -1 O PHE A 366 N VAL A 305 SHEET 1 AA5 3 GLN A 354 ILE A 355 0 SHEET 2 AA5 3 CYS A 420 ILE A 422 1 O THR A 421 N ILE A 355 SHEET 3 AA5 3 ASP A 425 LEU A 427 -1 O ASP A 425 N ILE A 422 SSBOND 1 CYS A 183 CYS A 247 1555 1555 2.04 CISPEP 1 MET A 59 PRO A 60 0 4.71 SITE 1 AC1 6 ARG A 139 SER A 144 SER A 145 SER A 146 SITE 2 AC1 6 PHE A 207 SER A 219 CRYST1 198.200 45.900 67.600 90.00 90.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005045 0.000000 0.000009 0.00000 SCALE2 0.000000 0.021786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014793 0.00000