HEADER VIRAL PROTEIN 27-JAN-16 5HUG TITLE THE CRYSTAL STRUCTURE OF NEURAMINIDASE FROM A/AMERICAN GREEN-WINGED TITLE 2 TEAL/WASHINGTON/195750/2014 INFLUENZA VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/AMERICAN GREEN-WINGED SOURCE 3 TEAL/WASHINGTON/195750/2014(H5N1)); SOURCE 4 ORGANISM_TAXID: 1609053; SOURCE 5 STRAIN: A/AMERICAN GREEN-WINGED TEAL/WASHINGTON/195750/2014(H5N1); SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS NEURAMINIDASE, INFLUENZA VIRUS, H5NX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,P.J.CARNEY,Z.GUO,J.C.CHANG,J.STEVENS REVDAT 5 13-NOV-24 5HUG 1 HETSYN LINK REVDAT 4 29-JUL-20 5HUG 1 COMPND JRNL REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 08-JUN-16 5HUG 1 JRNL REVDAT 2 20-APR-16 5HUG 1 JRNL REVDAT 1 13-APR-16 5HUG 0 JRNL AUTH H.YANG,P.J.CARNEY,V.P.MISHIN,Z.GUO,J.C.CHANG,D.E.WENTWORTH, JRNL AUTH 2 L.V.GUBAREVA,J.STEVENS JRNL TITL MOLECULAR CHARACTERIZATIONS OF SURFACE PROTEINS JRNL TITL 2 HEMAGGLUTININ AND NEURAMINIDASE FROM RECENT H5NX AVIAN JRNL TITL 3 INFLUENZA VIRUSES. JRNL REF J.VIROL. V. 90 5770 2016 JRNL REFN ESSN 1098-5514 JRNL PMID 27053557 JRNL DOI 10.1128/JVI.00180-16 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2019 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.52000 REMARK 3 B22 (A**2) : -1.52000 REMARK 3 B33 (A**2) : 3.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.524 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3152 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2791 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4278 ; 2.035 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6426 ; 0.909 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 7.297 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;32.910 ;23.881 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 473 ;12.442 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;10.264 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3505 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 729 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1543 ; 1.276 ; 1.503 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1542 ; 1.273 ; 1.502 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1910 ; 1.778 ; 2.244 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1911 ; 1.778 ; 2.246 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1609 ; 2.366 ; 1.835 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1609 ; 2.362 ; 1.835 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2366 ; 3.375 ; 2.658 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3620 ; 4.231 ;13.296 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3575 ; 4.215 ;13.182 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 606 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7248 15.3584 31.2860 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0519 REMARK 3 T33: 0.0034 T12: -0.0017 REMARK 3 T13: 0.0002 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.3133 L22: 0.3924 REMARK 3 L33: 0.0731 L12: -0.0430 REMARK 3 L13: -0.0632 L23: -0.1431 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: -0.0170 S13: 0.0313 REMARK 3 S21: 0.0190 S22: 0.0027 S23: 0.0051 REMARK 3 S31: -0.0080 S32: 0.0098 S33: -0.0095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40498 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M REMARK 280 HEPES:NAOH PH 7.5, 30% (V/V ) PPG P400, MICROBATCH, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.82200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.82200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.82200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.82200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.82200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.82200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.82200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.82200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 91.64400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 45.82200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -45.82200 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 45.82200 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 45.82200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 GLY A 75 REMARK 465 ASP A 76 REMARK 465 SER A 77 REMARK 465 GLY A 78 REMARK 465 SER A 79 REMARK 465 PRO A 80 REMARK 465 GLY A 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 NAG C 1 O5 FUC C 2 1.49 REMARK 500 C6 NAG C 1 C1 FUC C 2 1.65 REMARK 500 O6 NAG C 1 C5 FUC C 2 1.99 REMARK 500 C6 NAG C 1 O5 FUC C 2 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 336 C GLY A 339 N 0.231 REMARK 500 PRO A 412B C GLU A 412C N 0.147 REMARK 500 GLU A 412C C LEU A 412D N 0.202 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 135 OG1 - CB - CG2 ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASN A 306 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 GLY A 333 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 CYS A 336 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 125 -160.53 -103.18 REMARK 500 ILE A 222 68.27 63.51 REMARK 500 THR A 225 -156.71 -137.98 REMARK 500 ALA A 250 -168.92 -127.55 REMARK 500 ASP A 283 114.49 -160.10 REMARK 500 HIS A 296 35.38 -158.74 REMARK 500 TYR A 347 -167.21 66.17 REMARK 500 SER A 404 -138.83 -115.87 REMARK 500 TRP A 458 77.65 -119.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 333 -11.73 REMARK 500 CYS A 336 -15.90 REMARK 500 GLU A 412C -11.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 O REMARK 620 2 GLY A 297 O 87.8 REMARK 620 3 ASP A 324 OD2 95.5 91.2 REMARK 620 4 GLY A 345 O 95.7 82.4 166.9 REMARK 620 5 TYR A 347 O 87.5 167.4 100.8 86.5 REMARK 620 6 HOH A 638 O 176.2 93.4 88.1 80.9 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 379 OD1 REMARK 620 2 ASP A 379 OD2 52.6 REMARK 620 3 ASN A 381 OD1 74.0 106.4 REMARK 620 4 ASP A 387 OD1 171.8 126.0 113.1 REMARK 620 5 SER A 389 O 86.0 78.9 148.0 85.8 REMARK 620 6 HOH A 604 O 112.0 74.1 86.2 73.4 124.9 REMARK 620 7 HOH A 710 O 87.4 134.5 76.8 90.3 77.6 149.8 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HUK RELATED DB: PDB REMARK 900 RELATED ID: 5HVB RELATED DB: PDB REMARK 900 RELATED ID: 5HUW RELATED DB: PDB DBREF 5HUG A 73 470 PDB 5HUG 5HUG 73 470 SEQRES 1 A 397 GLY SER GLY ASP SER GLY SER PRO GLY SER VAL ALA LEU SEQRES 2 A 397 ALA GLY ASN SER SER LEU CYS PRO ILE SER GLY TRP ALA SEQRES 3 A 397 ILE TYR SER LYS ASP ASN GLY ILE ARG ILE GLY SER LYS SEQRES 4 A 397 GLY ASP VAL PHE VAL ILE ARG GLU PRO PHE ILE SER CYS SEQRES 5 A 397 SER HIS LEU GLU CYS ARG THR PHE PHE LEU THR GLN GLY SEQRES 6 A 397 ALA LEU LEU ASN ASP LYS HIS SER ASN GLY THR VAL LYS SEQRES 7 A 397 ASP ARG SER PRO TYR ARG THR LEU MET SER CYS PRO VAL SEQRES 8 A 397 GLY GLU ALA PRO SER PRO TYR ASN SER ARG PHE GLU SER SEQRES 9 A 397 VAL ALA TRP SER ALA SER ALA CYS HIS ASP GLY ILE SER SEQRES 10 A 397 TRP LEU THR ILE GLY ILE SER GLY PRO ASP ASN GLY ALA SEQRES 11 A 397 VAL ALA VAL LEU LYS TYR ASN GLY ILE ILE THR ASP THR SEQRES 12 A 397 ILE LYS SER TRP ARG SER ASN ILE LEU ARG THR GLN GLU SEQRES 13 A 397 SER GLU CYS ALA CYS ILE ASN GLY SER CYS PHE THR ILE SEQRES 14 A 397 MET THR ASP GLY PRO SER ASN GLY GLN ALA SER TYR LYS SEQRES 15 A 397 ILE PHE LYS VAL GLU LYS GLY LYS VAL VAL LYS SER VAL SEQRES 16 A 397 GLU LEU ASN ALA PRO ASN TYR HIS TYR GLU GLU CYS SER SEQRES 17 A 397 CYS TYR PRO ASP ALA SER GLU VAL MET CYS VAL CYS ARG SEQRES 18 A 397 ASP ASN TRP HIS GLY SER ASN ARG PRO TRP VAL SER PHE SEQRES 19 A 397 ASN GLN ASN LEU GLU TYR GLN ILE GLY TYR ILE CYS SER SEQRES 20 A 397 GLY VAL PHE GLY ASP ASN PRO ARG PRO ASN ASP GLY THR SEQRES 21 A 397 GLY SER CYS GLY PRO VAL SER SER ASN GLY ALA TYR GLY SEQRES 22 A 397 VAL LYS GLY PHE SER PHE LYS TYR GLY ASN GLY VAL TRP SEQRES 23 A 397 ILE GLY ARG THR LYS SER THR SER SER ARG SER GLY PHE SEQRES 24 A 397 GLU MET ILE TRP ASP PRO ASN GLY TRP THR GLU THR ASP SEQRES 25 A 397 SER SER PHE SER VAL LYS GLN GLU ILE VAL ALA ILE THR SEQRES 26 A 397 ASP TRP SER GLY TYR SER GLY SER PHE VAL GLN HIS PRO SEQRES 27 A 397 GLU LEU THR GLY LEU ASP CYS MET ARG PRO CYS PHE TRP SEQRES 28 A 397 VAL GLU LEU ILE ARG GLY ARG PRO LYS GLU ASN THR ILE SEQRES 29 A 397 TRP THR SER GLY SER SER ILE SER PHE CYS GLY VAL ASN SEQRES 30 A 397 SER ASP THR VAL GLY TRP SER TRP PRO ASP GLY ALA GLU SEQRES 31 A 397 LEU PRO PHE THR ILE ASP LYS MODRES 5HUG NAG B 1 NAG -D MODRES 5HUG NAG B 2 NAG -D MODRES 5HUG FUC B 3 FUC -L MODRES 5HUG NAG C 1 NAG -D MODRES 5HUG FUC C 2 FUC -L MODRES 5HUG NAG A 508 NAG -D HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET NAG C 1 14 HET FUC C 2 10 HET CA A 501 1 HET CA A 502 1 HET NAG A 508 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 FUC 2(C6 H12 O5) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *168(H2 O) HELIX 1 AA1 ASN A 104 SER A 110 1 7 HELIX 2 AA2 ASP A 142 ASN A 146 5 5 HELIX 3 AA3 HIS A 412A GLY A 414 1 6 HELIX 4 AA4 PHE A 466 LYS A 470 5 5 SHEET 1 AA1 4 GLY A 96 LYS A 102 0 SHEET 2 AA1 4 THR A 439 VAL A 449 -1 O CYS A 447 N ALA A 98 SHEET 3 AA1 4 ARG A 419 GLY A 429 -1 N ARG A 428 O SER A 440 SHEET 4 AA1 4 SER A 407 GLN A 412 -1 N PHE A 410 O CYS A 421 SHEET 1 AA2 4 PHE A 115 CYS A 124 0 SHEET 2 AA2 4 CYS A 129 LEU A 139 -1 O PHE A 132 N PHE A 121 SHEET 3 AA2 4 THR A 157 PRO A 162 -1 O CYS A 161 N THR A 131 SHEET 4 AA2 4 ARG A 172 VAL A 176 -1 O SER A 175 N LEU A 158 SHEET 1 AA3 4 SER A 179 HIS A 184 0 SHEET 2 AA3 4 TRP A 189 SER A 195 -1 O LEU A 190 N CYS A 183 SHEET 3 AA3 4 VAL A 202 TYR A 207 -1 O VAL A 204 N GLY A 193 SHEET 4 AA3 4 ILE A 210 LYS A 216 -1 O ILE A 215 N ALA A 203 SHEET 1 AA4 4 ALA A 231 ILE A 233 0 SHEET 2 AA4 4 SER A 236 ASP A 243 -1 O SER A 236 N ILE A 233 SHEET 3 AA4 4 SER A 251 GLU A 258 -1 O VAL A 257 N CYS A 237 SHEET 4 AA4 4 LYS A 261 GLU A 267 -1 O VAL A 263 N LYS A 256 SHEET 1 AA5 4 GLU A 276 ASP A 283 0 SHEET 2 AA5 4 GLU A 286 ARG A 292 -1 O VAL A 290 N SER A 279 SHEET 3 AA5 4 PRO A 301 PHE A 305 -1 O PRO A 301 N CYS A 291 SHEET 4 AA5 4 TYR A 312 TYR A 316 -1 O GLY A 315 N TRP A 302 SHEET 1 AA6 4 SER A 353 TYR A 356 0 SHEET 2 AA6 4 GLY A 359 ARG A 364 -1 O GLY A 359 N TYR A 356 SHEET 3 AA6 4 SER A 372 ASP A 379 -1 O ILE A 377 N ILE A 362 SHEET 4 AA6 4 VAL A 392 TRP A 403 -1 O GLN A 395 N MET A 376 SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.12 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.14 SSBOND 3 CYS A 183 CYS A 230 1555 1555 2.07 SSBOND 4 CYS A 232 CYS A 237 1555 1555 2.13 SSBOND 5 CYS A 278 CYS A 291 1555 1555 2.18 SSBOND 6 CYS A 280 CYS A 289 1555 1555 2.08 SSBOND 7 CYS A 318 CYS A 336 1555 1555 2.07 SSBOND 8 CYS A 421 CYS A 447 1555 1555 2.18 LINK ND2 ASN A 88 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 146 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 234 C1 NAG A 508 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.47 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.33 LINK O ASP A 293 CA CA A 502 1555 1555 2.31 LINK O GLY A 297 CA CA A 502 1555 1555 2.39 LINK OD2 ASP A 324 CA CA A 502 1555 1555 2.32 LINK O GLY A 345 CA CA A 502 1555 1555 2.43 LINK O TYR A 347 CA CA A 502 1555 1555 2.35 LINK OD1 ASP A 379 CA CA A 501 1555 1555 2.35 LINK OD2 ASP A 379 CA CA A 501 1555 1555 2.63 LINK OD1 ASN A 381 CA CA A 501 1555 1555 2.24 LINK OD1 ASP A 387 CA CA A 501 1555 1555 2.40 LINK O SER A 389 CA CA A 501 1555 1555 2.27 LINK CA CA A 501 O HOH A 604 1555 1555 2.51 LINK CA CA A 501 O HOH A 710 1555 1555 2.37 LINK CA CA A 502 O HOH A 638 1555 1555 2.47 CISPEP 1 ASN A 325 PRO A 326 0 -0.68 CISPEP 2 ARG A 430 PRO A 431 0 3.70 CISPEP 3 LEU A 464 PRO A 465 0 0.01 CRYST1 91.644 91.644 108.965 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010912 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009177 0.00000