HEADER TRANSFERASE 28-JAN-16 5HV1 TITLE RIFAMPIN PHOSPHOTRANSFERASE IN COMPLEX WITH AMPPNP AND RIFAMPIN FROM TITLE 2 LISTERIA MONOCYTOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-867; COMPND 5 SYNONYM: RIFAMPIN PHOSPHOTRANSFERASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: ATE46_07415; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBIOTIC RESISTANCE, RIFAMPIN, PHOSPHOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHANG,X.QI REVDAT 6 20-MAR-24 5HV1 1 REMARK REVDAT 5 04-OCT-17 5HV1 1 REMARK REVDAT 4 27-SEP-17 5HV1 1 JRNL REMARK REVDAT 3 22-JUN-16 5HV1 1 JRNL REVDAT 2 06-APR-16 5HV1 1 JRNL REVDAT 1 30-MAR-16 5HV1 0 JRNL AUTH X.QI,W.LIN,M.MA,C.WANG,Y.HE,N.HE,J.GAO,H.ZHOU,Y.XIAO,Y.WANG, JRNL AUTH 2 P.ZHANG JRNL TITL STRUCTURAL BASIS OF RIFAMPIN INACTIVATION BY RIFAMPIN JRNL TITL 2 PHOSPHOTRANSFERASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 3803 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27001859 JRNL DOI 10.1073/PNAS.1523614113 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 21038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0199 - 9.1083 0.99 1541 150 0.1908 0.2355 REMARK 3 2 9.1083 - 7.2632 1.00 1549 155 0.2285 0.2741 REMARK 3 3 7.2632 - 6.3550 1.00 1552 147 0.2358 0.2953 REMARK 3 4 6.3550 - 5.7785 1.00 1557 145 0.2669 0.2692 REMARK 3 5 5.7785 - 5.3668 1.00 1567 147 0.2453 0.2981 REMARK 3 6 5.3668 - 5.0520 1.00 1532 154 0.2432 0.2709 REMARK 3 7 5.0520 - 4.8000 1.00 1567 149 0.2279 0.2670 REMARK 3 8 4.8000 - 4.5919 1.00 1536 147 0.2122 0.2214 REMARK 3 9 4.5919 - 4.4157 1.00 1569 149 0.2116 0.2062 REMARK 3 10 4.4157 - 4.2637 1.00 1531 155 0.2148 0.2558 REMARK 3 11 4.2637 - 4.1308 1.00 1564 152 0.2326 0.2860 REMARK 3 12 4.1308 - 4.0130 1.00 1536 149 0.2428 0.2641 REMARK 3 13 4.0130 - 3.9075 1.00 1566 147 0.2447 0.3132 REMARK 3 14 3.9075 - 3.8124 1.00 1543 145 0.2518 0.2831 REMARK 3 15 3.8124 - 3.7259 1.00 1550 147 0.2752 0.2726 REMARK 3 16 3.7259 - 3.6467 1.00 1537 142 0.2777 0.3109 REMARK 3 17 3.6467 - 3.5739 1.00 1575 149 0.2724 0.3286 REMARK 3 18 3.5739 - 3.5066 1.00 1545 148 0.2818 0.3136 REMARK 3 19 3.5066 - 3.4440 1.00 1545 146 0.3056 0.3663 REMARK 3 20 3.4440 - 3.3857 1.00 1559 151 0.2915 0.3131 REMARK 3 21 3.3857 - 3.3312 0.99 1544 143 0.3025 0.3547 REMARK 3 22 3.3312 - 3.2800 0.97 1491 140 0.3245 0.4360 REMARK 3 23 3.2800 - 3.2318 0.88 1391 130 0.3280 0.3446 REMARK 3 24 3.2318 - 3.1864 0.73 1125 108 0.3465 0.4599 REMARK 3 25 3.1864 - 3.1433 0.64 985 93 0.3354 0.3633 REMARK 3 26 3.1433 - 3.1026 0.54 850 81 0.3812 0.3713 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 6878 REMARK 3 ANGLE : 2.129 9320 REMARK 3 CHIRALITY : 0.342 1065 REMARK 3 PLANARITY : 0.007 1188 REMARK 3 DIHEDRAL : 19.929 2585 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 9.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23960 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.019 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 26.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18%(W/V) PEG3350, 100 MM BICINE, PH REMARK 280 9.2, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.76533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.88267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 95.82400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.94133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 159.70667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 127.76533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 63.88267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 31.94133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 95.82400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 159.70667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 ARG A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 ALA A -3 REMARK 465 CYS A -2 REMARK 465 GLU A -1 REMARK 465 LEU A 0 REMARK 465 PRO A 410 REMARK 465 LEU A 411 REMARK 465 PRO A 412 REMARK 465 THR A 413 REMARK 465 GLU A 414 REMARK 465 GLU A 415 REMARK 465 ASN A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 HIS A 419 REMARK 465 ALA A 420 REMARK 465 THR A 421 REMARK 465 VAL A 422 REMARK 465 SER A 423 REMARK 465 GLY A 424 REMARK 465 LYS A 425 REMARK 465 PRO A 426 REMARK 465 PRO A 427 REMARK 465 VAL A 428 REMARK 465 ARG A 429 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 328 OG1 THR A 371 2.02 REMARK 500 OG1 THR A 136 O2A ANP A 901 2.06 REMARK 500 N GLY A 753 O HOH A 1001 2.08 REMARK 500 O GLU A 287 N GLY A 291 2.14 REMARK 500 N ARG A 328 OG SER A 746 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 225 OG SER A 225 9555 2.08 REMARK 500 NH2 ARG A 50 OD2 ASP A 613 8565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 533 CB VAL A 533 CG1 -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 108 N - CA - C ANGL. DEV. = -20.7 DEGREES REMARK 500 GLY A 109 N - CA - C ANGL. DEV. = -27.1 DEGREES REMARK 500 PRO A 325 C - N - CD ANGL. DEV. = -28.6 DEGREES REMARK 500 MET A 382 CB - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 MET A 382 N - CA - C ANGL. DEV. = -28.2 DEGREES REMARK 500 VAL A 770 N - CA - C ANGL. DEV. = -20.2 DEGREES REMARK 500 GLU A 842 CB - CA - C ANGL. DEV. = -23.0 DEGREES REMARK 500 GLU A 842 N - CA - C ANGL. DEV. = -26.0 DEGREES REMARK 500 ASN A 843 C - N - CA ANGL. DEV. = 54.9 DEGREES REMARK 500 LEU A 866 CB - CG - CD2 ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 201 -61.58 70.00 REMARK 500 SER A 202 -2.95 76.10 REMARK 500 ASN A 203 122.87 -39.22 REMARK 500 GLU A 233 -72.83 -120.07 REMARK 500 ASN A 234 21.76 -141.69 REMARK 500 ARG A 311 128.20 -172.59 REMARK 500 MET A 339 -72.65 -130.53 REMARK 500 SER A 379 51.59 -118.65 REMARK 500 ARG A 380 -40.73 -139.11 REMARK 500 MET A 382 -74.43 -140.67 REMARK 500 LEU A 387 3.62 -65.74 REMARK 500 ASP A 391 88.82 -166.39 REMARK 500 ASN A 403 54.37 -119.65 REMARK 500 LYS A 404 -158.94 -119.55 REMARK 500 LYS A 405 71.27 -67.41 REMARK 500 ASP A 492 -38.62 -36.07 REMARK 500 TRP A 504 -69.76 -93.62 REMARK 500 GLU A 507 42.78 34.13 REMARK 500 ASN A 509 65.29 -103.87 REMARK 500 ASN A 597 71.70 -155.87 REMARK 500 ALA A 628 -9.26 -141.43 REMARK 500 LYS A 648 -38.14 -39.34 REMARK 500 GLU A 736 -53.42 73.69 REMARK 500 VAL A 770 -122.84 60.78 REMARK 500 ASP A 789 74.97 -107.81 REMARK 500 THR A 801 75.99 -162.51 REMARK 500 SER A 804 -29.92 -36.77 REMARK 500 PRO A 807 -14.70 -41.94 REMARK 500 HIS A 825 135.32 -39.59 REMARK 500 VAL A 839 -42.08 -131.72 REMARK 500 THR A 859 -71.24 -125.66 REMARK 500 LEU A 866 151.74 -44.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 107 GLY A 108 -56.43 REMARK 500 VAL A 770 SER A 771 -149.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 309 OE1 REMARK 620 2 ANP A 901 O1G 109.3 REMARK 620 3 ANP A 901 O1B 136.1 93.1 REMARK 620 4 ANP A 901 O3A 92.1 66.9 62.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RFP A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HV2 RELATED DB: PDB REMARK 900 RELATED ID: 5HV3 RELATED DB: PDB REMARK 900 RELATED ID: 5HV6 RELATED DB: PDB DBREF1 5HV1 A 1 867 UNP A0A0S2YLC8_LISMN DBREF2 5HV1 A A0A0S2YLC8 1 867 SEQADV 5HV1 MET A -15 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 ARG A -14 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 GLY A -13 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 SER A -12 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 HIS A -11 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 HIS A -10 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 HIS A -9 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 HIS A -8 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 HIS A -7 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 HIS A -6 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 GLY A -5 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 SER A -4 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 ALA A -3 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 CYS A -2 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 GLU A -1 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV1 LEU A 0 UNP A0A0S2YLC EXPRESSION TAG SEQRES 1 A 883 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 883 CYS GLU LEU MET LYS PRO TYR VAL LEU LYS PHE GLN GLU SEQRES 3 A 883 ILE ARG PRO HIS SER GLU ALA LEU VAL GLY GLY LYS GLY SEQRES 4 A 883 MET ASN LEU GLY ALA CYS SER ASN ILE GLU GLY VAL HIS SEQRES 5 A 883 VAL PRO ALA GLY PHE CYS LEU THR THR GLU ALA TYR LYS SEQRES 6 A 883 ARG THR LEU ALA GLU ASN ASN GLU PHE THR GLN LEU LEU SEQRES 7 A 883 GLN ARG LEU SER SER LEU LYS THR SER ASP MET ASP ALA SEQRES 8 A 883 ILE ARG GLU ILE SER GLU THR ILE ARG THR LEU ILE GLN SEQRES 9 A 883 HIS THR GLN ILE PRO SER GLU ILE ALA SER TYR MET ASP SEQRES 10 A 883 ALA THR LEU LEU ASP VAL GLY GLY TYR GLU MET PRO PHE SEQRES 11 A 883 ALA VAL ARG SER SER ALA THR ALA GLU ASP LEU PRO HIS SEQRES 12 A 883 ALA SER PHE ALA GLY GLN HIS ASP THR TYR LEU ASN ILE SEQRES 13 A 883 ILE GLY LYS ASP ALA LEU LEU GLN HIS ILE SER MET CYS SEQRES 14 A 883 TRP ALA SER LEU PHE THR GLU ARG ALA ILE ILE TYR ARG SEQRES 15 A 883 ILE GLN ASN GLN PHE ASP HIS ARG LYS VAL GLN LEU ALA SEQRES 16 A 883 VAL VAL ILE GLN GLN MET ILE SER PRO GLU ALA SER GLY SEQRES 17 A 883 ILE LEU PHE THR ALA ASP PRO ILE THR SER ASN ARG LYS SEQRES 18 A 883 SER LEU SER ILE ASP ALA SER PHE GLY LEU GLY GLU ALA SEQRES 19 A 883 LEU VAL SER GLY LEU VAL SER ALA ASP SER TYR THR VAL SEQRES 20 A 883 ARG GLU ASN THR ILE THR ASN LYS ILE ILE ALA THR LYS SEQRES 21 A 883 LYS LEU ALA ILE TYR SER LEU LYS GLU GLY GLY THR GLU SEQRES 22 A 883 THR ARG ILE LEU GLU LYS SER GLN GLN THR LYS GLN THR SEQRES 23 A 883 LEU THR ASP GLN GLN ILE ILE GLN LEU ALA LYS LEU GLY SEQRES 24 A 883 ARG LYS ILE GLU ALA TYR PHE GLY LYS PRO GLN ASP ILE SEQRES 25 A 883 GLU TRP CYS LEU ALA GLU GLY ALA PHE TYR ILE VAL GLN SEQRES 26 A 883 SER ARG PRO ILE THR THR LEU TYR PRO ILE PRO GLU VAL SEQRES 27 A 883 ASN GLU PRO GLY ASN ARG VAL TYR ILE SER VAL ALA HIS SEQRES 28 A 883 GLN GLN MET MET THR ASP ALA MET LYS PRO LEU GLY LEU SEQRES 29 A 883 SER PHE TYR LEU MET THR THR PRO ALA THR MET TYR THR SEQRES 30 A 883 ALA GLY GLY ARG LEU PHE VAL ASP ILE THR GLN SER LEU SEQRES 31 A 883 SER ALA LYS VAL SER ARG ASP MET MET VAL ASN SER LEU SEQRES 32 A 883 GLY GLN SER ASP PRO LEU ILE LYS ASP ALA LEU LEU THR SEQRES 33 A 883 VAL ILE ASN LYS LYS GLY PHE LEU PRO PRO LEU PRO THR SEQRES 34 A 883 GLU GLU ASN PRO SER HIS ALA THR VAL SER GLY LYS PRO SEQRES 35 A 883 PRO VAL ARG SER ILE PRO ASP SER SER SER VAL PHE GLU SEQRES 36 A 883 LEU VAL ARG ASN SER GLU ASN SER ILE LYS HIS LEU LYS SEQRES 37 A 883 GLN SER ILE GLU THR LYS SER GLY SER ASP LEU PHE ASP SEQRES 38 A 883 PHE ILE VAL GLU ASP LEU GLU GLU LEU LYS ARG VAL LEU SEQRES 39 A 883 PHE ASN PRO THR SER ILE ASP ALA ILE MET ALA GLY MET SEQRES 40 A 883 ASP ALA SER ALA TRP LEU ASN GLU HIS ILE TYR GLN TRP SEQRES 41 A 883 LEU GLY GLU LYS ASN VAL ALA ASP LYS LEU SER GLU SER SEQRES 42 A 883 ALA PRO ASN ASN ILE THR SER GLN MET GLY LEU GLU LEU SEQRES 43 A 883 LEU ASP VAL ALA ASP VAL ILE ARG PRO TYR PRO ALA VAL SEQRES 44 A 883 ARG ALA TYR LEU GLU GLN THR LYS ASN PRO ASP PHE MET SEQRES 45 A 883 ASN GLU LEU ALA THR LEU GLU GLY GLY ALA GLU THR LYS SEQRES 46 A 883 LYS ALA LEU GLU ASP TYR LEU GLN LYS TYR GLY MET ARG SEQRES 47 A 883 CYS ALA GLY GLU ILE ASP LEU THR LYS THR ARG TRP ILE SEQRES 48 A 883 GLU ASN PRO LEU THR LEU ILE PRO LEU ILE LEU SER ASN SEQRES 49 A 883 ILE LYS ASN PHE ASP SER SER ALA SER MET HIS LYS PHE SEQRES 50 A 883 ALA GLN GLY GLU LYS GLU ALA PHE HIS LYS GLU GLN GLU SEQRES 51 A 883 ILE LEU ARG ARG LEU GLN GLU LEU PRO ASP GLY GLU GLN SEQRES 52 A 883 LYS ALA MET GLU THR LYS GLU LYS ILE ASP ILE LEU ARG SEQRES 53 A 883 HIS PHE ILE GLY TYR ARG GLU TYR PRO LYS TYR GLY MET SEQRES 54 A 883 ILE ASN ARG TYR PHE ILE TYR LYS LEU ALA LEU LEU ARG SEQRES 55 A 883 ALA GLY GLU GLN LEU VAL LYS ASP GLY ILE LEU GLN GLU SEQRES 56 A 883 HIS GLU ASP ILE TYR PHE LEU TYR PHE GLU GLU LEU ARG SEQRES 57 A 883 GLU VAL VAL ARG THR GLY GLN VAL ASP TYR GLU LEU ILE SEQRES 58 A 883 ASN ALA ARG LYS ARG ASP PHE ALA THR PHE GLU LYS LEU SEQRES 59 A 883 THR PRO PRO ARG ILE LEU THR SER ASP GLY GLU MET ILE SEQRES 60 A 883 ASN GLY GLU TYR LYS ARG GLU ASN LEU PRO LYS ASP ALA SEQRES 61 A 883 ILE LEU GLY LEU PRO VAL SER SER GLY THR VAL GLU GLY SEQRES 62 A 883 ARG ALA ARG VAL ILE LEU GLU MET GLU LYS ALA ASP LEU SEQRES 63 A 883 GLU ASP GLY ASP ILE LEU VAL THR ALA TYR THR ASP PRO SEQRES 64 A 883 SER TRP THR PRO ALA PHE VAL SER ILE LYS GLY LEU VAL SEQRES 65 A 883 THR GLU VAL GLY GLY LEU MET THR HIS GLY ALA VAL ILE SEQRES 66 A 883 ALA ARG GLU TYR GLY LEU PRO ALA VAL VAL GLY VAL GLU SEQRES 67 A 883 ASN ALA THR THR ILE ILE LYS ASP GLY GLN GLN ILE ARG SEQRES 68 A 883 ILE ASN GLY THR GLU GLY TYR ILE GLU ILE LEU ASP HET ANP A 901 31 HET RFP A 902 59 HET MG A 903 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM RFP RIFAMPICIN HETNAM MG MAGNESIUM ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 RFP C43 H58 N4 O12 FORMUL 4 MG MG 2+ FORMUL 5 HOH *3(H2 O) HELIX 1 AA1 GLN A 9 ILE A 11 5 3 HELIX 2 AA2 SER A 15 SER A 30 1 16 HELIX 3 AA3 THR A 44 LEU A 52 1 9 HELIX 4 AA4 ASN A 55 SER A 66 1 12 HELIX 5 AA5 ASP A 72 THR A 90 1 19 HELIX 6 AA6 PRO A 93 ASP A 106 1 14 HELIX 7 AA7 GLY A 142 SER A 156 1 15 HELIX 8 AA8 THR A 159 ASN A 169 1 11 HELIX 9 AA9 ASP A 172 ARG A 174 5 3 HELIX 10 AB1 GLY A 216 GLY A 222 1 7 HELIX 11 AB2 GLU A 262 THR A 267 1 6 HELIX 12 AB3 THR A 272 GLY A 291 1 20 HELIX 13 AB4 VAL A 333 MET A 338 1 6 HELIX 14 AB5 LYS A 344 MET A 353 1 10 HELIX 15 AB6 ILE A 370 ALA A 376 1 7 HELIX 16 AB7 MET A 382 LEU A 387 1 6 HELIX 17 AB8 ASP A 391 ILE A 402 1 12 HELIX 18 AB9 SER A 435 ILE A 455 1 21 HELIX 19 AC1 SER A 459 PHE A 479 1 21 HELIX 20 AC2 ASN A 480 LEU A 505 1 26 HELIX 21 AC3 VAL A 510 SER A 515 1 6 HELIX 22 AC4 ASN A 521 ARG A 538 1 18 HELIX 23 AC5 TYR A 540 GLN A 549 1 10 HELIX 24 AC6 ASP A 554 LEU A 562 5 9 HELIX 25 AC7 GLY A 564 GLY A 580 1 17 HELIX 26 AC8 ARG A 593 THR A 600 5 8 HELIX 27 AC9 LEU A 601 ASN A 611 1 11 HELIX 28 AD1 SER A 615 LEU A 639 1 25 HELIX 29 AD2 ASP A 644 ILE A 663 1 20 HELIX 30 AD3 GLY A 664 ARG A 666 5 3 HELIX 31 AD4 GLU A 667 ASP A 694 1 28 HELIX 32 AD5 GLU A 701 LEU A 706 5 6 HELIX 33 AD6 TYR A 707 GLY A 718 1 12 HELIX 34 AD7 ASP A 721 PHE A 735 1 15 HELIX 35 AD8 GLU A 784 ALA A 788 5 5 HELIX 36 AD9 ASP A 802 PHE A 809 5 8 HELIX 37 AE1 GLY A 826 GLY A 834 1 9 HELIX 38 AE2 ASN A 843 ILE A 848 1 6 SHEET 1 AA1 5 VAL A 5 LYS A 7 0 SHEET 2 AA1 5 GLY A 40 LEU A 43 -1 O CYS A 42 N LEU A 6 SHEET 3 AA1 5 VAL A 176 GLN A 184 -1 O VAL A 180 N LEU A 43 SHEET 4 AA1 5 PHE A 114 ALA A 122 -1 N SER A 119 O ALA A 179 SHEET 5 AA1 5 THR A 136 ILE A 140 -1 O ILE A 140 N PHE A 114 SHEET 1 AA2 6 ASN A 238 LYS A 239 0 SHEET 2 AA2 6 ASP A 227 VAL A 231 -1 N THR A 230 O ASN A 238 SHEET 3 AA2 6 LEU A 207 PHE A 213 -1 N ALA A 211 O ASP A 227 SHEET 4 AA2 6 ALA A 190 PHE A 195 -1 N PHE A 195 O SER A 208 SHEET 5 AA2 6 GLN A 294 ALA A 301 -1 O LEU A 300 N ALA A 190 SHEET 6 AA2 6 ALA A 304 PRO A 312 -1 O TYR A 306 N CYS A 299 SHEET 1 AA3 2 LEU A 246 SER A 250 0 SHEET 2 AA3 2 THR A 256 ILE A 260 -1 O ARG A 259 N ALA A 247 SHEET 1 AA4 5 MET A 359 THR A 361 0 SHEET 2 AA4 5 LEU A 366 ASP A 369 -1 O PHE A 367 N TYR A 360 SHEET 3 AA4 5 VAL A 329 SER A 332 -1 N ILE A 331 O VAL A 368 SHEET 4 AA4 5 ILE A 743 THR A 745 -1 O LEU A 744 N TYR A 330 SHEET 5 AA4 5 MET A 750 ILE A 751 -1 O ILE A 751 N ILE A 743 SHEET 1 AA5 7 ILE A 765 LEU A 766 0 SHEET 2 AA5 7 TYR A 862 GLU A 864 -1 O ILE A 863 N ILE A 765 SHEET 3 AA5 7 GLN A 853 ASN A 857 -1 N ARG A 855 O GLU A 864 SHEET 4 AA5 7 THR A 774 VAL A 781 -1 N GLY A 777 O ILE A 854 SHEET 5 AA5 7 ILE A 795 VAL A 797 1 O ILE A 795 N ARG A 778 SHEET 6 AA5 7 GLY A 814 VAL A 816 1 O VAL A 816 N LEU A 796 SHEET 7 AA5 7 ALA A 837 VAL A 838 1 O VAL A 838 N LEU A 815 LINK OE1 GLN A 309 MG MG A 903 1555 1555 2.30 LINK O1G ANP A 901 MG MG A 903 1555 1555 2.01 LINK O1B ANP A 901 MG MG A 903 1555 1555 2.12 LINK O3A ANP A 901 MG MG A 903 1555 1555 2.61 CISPEP 1 GLY A 108 GLY A 109 0 17.89 CISPEP 2 SER A 221 GLY A 222 0 9.49 CISPEP 3 LEU A 223 VAL A 224 0 22.33 CISPEP 4 ARG A 380 ASP A 381 0 5.99 CISPEP 5 HIS A 825 GLY A 826 0 11.14 SITE 1 AC1 18 LYS A 22 ALA A 115 ARG A 117 PHE A 130 SITE 2 AC1 18 ALA A 131 GLY A 132 THR A 136 LEU A 138 SITE 3 AC1 18 GLN A 183 GLN A 184 LEU A 215 GLY A 216 SITE 4 AC1 18 GLU A 217 VAL A 220 GLU A 297 GLN A 309 SITE 5 AC1 18 ARG A 311 MG A 903 SITE 1 AC2 9 ILE A 331 VAL A 333 TYR A 351 THR A 355 SITE 2 AC2 9 VAL A 368 ILE A 370 PHE A 479 MET A 488 SITE 3 AC2 9 HOH A1002 SITE 1 AC3 4 GLU A 297 GLN A 309 ARG A 311 ANP A 901 CRYST1 151.090 151.090 191.648 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006619 0.003821 0.000000 0.00000 SCALE2 0.000000 0.007642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005218 0.00000