HEADER TRANSFERASE 28-JAN-16 5HV3 TITLE RIFAMPIN PHOSPHOTRANSFERASE G527Y MUTANT IN COMPLEX WITH AMPPNP FROM TITLE 2 LISTERIA MONOCYTOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-867; COMPND 5 SYNONYM: RIFAMPIN PHOSPHOTRANSFERASE; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: ATE46_07415; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBIOTIC RESISTANCE, RIFAMPIN, PHOSPHOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHANG,X.QI REVDAT 6 20-MAR-24 5HV3 1 REMARK REVDAT 5 04-OCT-17 5HV3 1 REMARK REVDAT 4 27-SEP-17 5HV3 1 JRNL REMARK REVDAT 3 22-JUN-16 5HV3 1 JRNL REVDAT 2 06-APR-16 5HV3 1 JRNL REVDAT 1 30-MAR-16 5HV3 0 JRNL AUTH X.QI,W.LIN,M.MA,C.WANG,Y.HE,N.HE,J.GAO,H.ZHOU,Y.XIAO,Y.WANG, JRNL AUTH 2 P.ZHANG JRNL TITL STRUCTURAL BASIS OF RIFAMPIN INACTIVATION BY RIFAMPIN JRNL TITL 2 PHOSPHOTRANSFERASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 3803 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27001859 JRNL DOI 10.1073/PNAS.1523614113 REMARK 2 REMARK 2 RESOLUTION. 3.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 18320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5103 - 7.3099 0.61 1528 171 0.1629 0.1955 REMARK 3 2 7.3099 - 5.8111 0.56 1422 156 0.2244 0.2562 REMARK 3 3 5.8111 - 5.0791 0.54 1376 152 0.2146 0.2601 REMARK 3 4 5.0791 - 4.6159 0.54 1364 152 0.1732 0.2400 REMARK 3 5 4.6159 - 4.2857 0.53 1346 150 0.1762 0.2017 REMARK 3 6 4.2857 - 4.0334 0.53 1317 146 0.1909 0.2588 REMARK 3 7 4.0334 - 3.8317 0.52 1311 145 0.2012 0.2639 REMARK 3 8 3.8317 - 3.6651 0.51 1279 143 0.2197 0.2715 REMARK 3 9 3.6651 - 3.5242 0.50 1273 142 0.2306 0.2771 REMARK 3 10 3.5242 - 3.4027 0.50 1255 139 0.2474 0.2977 REMARK 3 11 3.4027 - 3.2964 0.48 1217 135 0.2439 0.3493 REMARK 3 12 3.2964 - 3.2022 0.42 1065 118 0.2601 0.3500 REMARK 3 13 3.2022 - 3.1180 0.29 736 82 0.2829 0.3895 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6815 REMARK 3 ANGLE : 1.668 9225 REMARK 3 CHIRALITY : 0.064 1052 REMARK 3 PLANARITY : 0.007 1180 REMARK 3 DIHEDRAL : 19.548 2553 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18949 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V) PEG3350, 200 MM SODIUM REMARK 280 FORMATE, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.99500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.40950 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.99500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.40950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 PRO A 410 REMARK 465 LEU A 411 REMARK 465 PRO A 412 REMARK 465 THR A 413 REMARK 465 GLU A 414 REMARK 465 GLU A 415 REMARK 465 ASN A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 HIS A 419 REMARK 465 ALA A 420 REMARK 465 THR A 421 REMARK 465 VAL A 422 REMARK 465 SER A 423 REMARK 465 GLY A 424 REMARK 465 LYS A 425 REMARK 465 PRO A 426 REMARK 465 PRO A 427 REMARK 465 VAL A 428 REMARK 465 ARG A 429 REMARK 465 GLY A 753 REMARK 465 GLU A 754 REMARK 465 TYR A 755 REMARK 465 LYS A 756 REMARK 465 ARG A 757 REMARK 465 GLU A 758 REMARK 465 ASN A 759 REMARK 465 LEU A 760 REMARK 465 ASP A 867 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 806 OG1 CG2 REMARK 470 PRO A 807 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG TYR A 540 O GLY A 564 1.56 REMARK 500 CB TYR A 540 O GLY A 564 1.59 REMARK 500 OE1 GLN A 294 O ARG A 311 1.73 REMARK 500 CD1 ILE A 795 CG2 ILE A 854 1.74 REMARK 500 O ASN A 843 O THR A 846 1.78 REMARK 500 O ILE A 76 OG SER A 80 1.85 REMARK 500 OD2 ASP A 172 NH2 ARG A 174 1.88 REMARK 500 O SER A 15 SD MET A 24 1.89 REMARK 500 OD1 ASP A 802 OG SER A 804 1.90 REMARK 500 OD1 ASN A 552 O ASP A 554 1.90 REMARK 500 OD1 ASP A 227 OH TYR A 229 1.93 REMARK 500 O LEU A 387 O SER A 390 2.01 REMARK 500 OE2 GLU A 818 OG1 THR A 845 2.02 REMARK 500 OE2 GLU A 257 NH2 ARG A 259 2.04 REMARK 500 CB ALA A 779 CA GLY A 851 2.07 REMARK 500 CG ASN A 552 O ASP A 554 2.09 REMARK 500 O VAL A 107 NE2 GLN A 184 2.11 REMARK 500 O ALA A 799 CG1 VAL A 819 2.12 REMARK 500 O LEU A 52 CD2 PHE A 58 2.17 REMARK 500 O ASP A 789 OE2 GLU A 791 2.17 REMARK 500 OD1 ASP A 588 OG1 THR A 590 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 324 OG SER A 614 1455 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A -6 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 HIS A -6 CB - CA - C ANGL. DEV. = -27.7 DEGREES REMARK 500 SER A 15 N - CA - C ANGL. DEV. = -32.8 DEGREES REMARK 500 GLU A 16 C - N - CA ANGL. DEV. = 18.6 DEGREES REMARK 500 ARG A 50 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 LEU A 52 CB - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 GLY A 108 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 ALA A 197 CB - CA - C ANGL. DEV. = 33.0 DEGREES REMARK 500 ALA A 197 N - CA - C ANGL. DEV. = -23.5 DEGREES REMARK 500 VAL A 224 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 VAL A 224 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 ASN A 238 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 THR A 270 CB - CA - C ANGL. DEV. = -22.8 DEGREES REMARK 500 ARG A 311 CB - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 THR A 340 CB - CA - C ANGL. DEV. = -24.7 DEGREES REMARK 500 ILE A 431 CB - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 ILE A 431 N - CA - C ANGL. DEV. = 35.2 DEGREES REMARK 500 ASP A 554 N - CA - C ANGL. DEV. = -24.4 DEGREES REMARK 500 GLU A 567 N - CA - C ANGL. DEV. = -21.4 DEGREES REMARK 500 ALA A 584 N - CA - C ANGL. DEV. = -25.8 DEGREES REMARK 500 PHE A 735 CB - CA - C ANGL. DEV. = -39.0 DEGREES REMARK 500 PHE A 735 N - CA - C ANGL. DEV. = 42.4 DEGREES REMARK 500 GLU A 736 C - N - CA ANGL. DEV. = 49.1 DEGREES REMARK 500 PRO A 740 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 ALA A 779 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ASP A 794 N - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 ALA A 799 CB - CA - C ANGL. DEV. = -21.1 DEGREES REMARK 500 ALA A 799 N - CA - C ANGL. DEV. = 22.0 DEGREES REMARK 500 TYR A 800 C - N - CA ANGL. DEV. = 17.5 DEGREES REMARK 500 THR A 801 CB - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 THR A 801 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 PRO A 803 C - N - CD ANGL. DEV. = -23.7 DEGREES REMARK 500 PRO A 807 C - N - CA ANGL. DEV. = 12.9 DEGREES REMARK 500 GLN A 852 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 GLN A 852 N - CA - C ANGL. DEV. = 22.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -6 6.72 53.12 REMARK 500 HIS A -5 30.01 -155.00 REMARK 500 SER A 0 76.04 48.41 REMARK 500 ARG A 12 -159.84 -86.44 REMARK 500 HIS A 14 5.04 55.42 REMARK 500 ASN A 31 -1.28 -56.85 REMARK 500 HIS A 89 16.33 -148.00 REMARK 500 ALA A 97 -7.70 -53.85 REMARK 500 LEU A 125 74.18 -161.75 REMARK 500 ARG A 174 -13.25 78.56 REMARK 500 THR A 196 44.52 -89.67 REMARK 500 THR A 201 -3.33 84.43 REMARK 500 ARG A 204 -11.05 77.16 REMARK 500 GLU A 233 -142.40 59.68 REMARK 500 THR A 237 12.88 -143.35 REMARK 500 THR A 270 -15.85 -42.07 REMARK 500 ASP A 273 -29.87 -39.52 REMARK 500 GLU A 302 72.20 60.96 REMARK 500 MET A 339 -71.58 -129.23 REMARK 500 THR A 340 43.95 34.97 REMARK 500 MET A 353 6.72 -68.50 REMARK 500 SER A 375 -70.01 -71.97 REMARK 500 MET A 383 -72.33 -91.26 REMARK 500 LYS A 405 -60.16 66.06 REMARK 500 ILE A 431 77.70 60.10 REMARK 500 PRO A 432 161.70 -46.25 REMARK 500 SER A 459 -167.58 -164.50 REMARK 500 PHE A 466 -70.98 -55.93 REMARK 500 TYR A 546 -71.68 -58.99 REMARK 500 GLU A 558 35.64 -88.22 REMARK 500 ALA A 566 -4.98 82.86 REMARK 500 TYR A 579 -2.98 -143.71 REMARK 500 SER A 615 78.47 45.99 REMARK 500 SER A 746 -29.38 -35.76 REMARK 500 VAL A 770 -58.39 70.93 REMARK 500 PRO A 803 -17.20 -49.02 REMARK 500 PRO A 807 43.87 -77.90 REMARK 500 ALA A 808 -7.27 -143.78 REMARK 500 SER A 811 -5.58 -57.29 REMARK 500 THR A 824 -178.48 -65.42 REMARK 500 ASN A 843 43.04 -155.76 REMARK 500 ILE A 847 -6.21 86.07 REMARK 500 GLN A 852 -76.09 -82.67 REMARK 500 GLN A 853 178.24 176.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A -6 HIS A -5 149.18 REMARK 500 SER A 15 GLU A 16 142.50 REMARK 500 VAL A 107 GLY A 108 -43.26 REMARK 500 THR A 340 ASP A 341 139.58 REMARK 500 ASP A 554 PHE A 555 147.33 REMARK 500 PHE A 735 GLU A 736 118.44 REMARK 500 ALA A 799 TYR A 800 145.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 297 OE1 REMARK 620 2 GLN A 309 OE1 75.0 REMARK 620 3 ANP A 901 O1G 152.9 78.5 REMARK 620 4 ANP A 901 O1B 116.7 167.0 89.2 REMARK 620 5 ANP A 901 O3A 110.5 115.6 85.8 67.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HV1 RELATED DB: PDB REMARK 900 RELATED ID: 5HV2 RELATED DB: PDB REMARK 900 RELATED ID: 5HV6 RELATED DB: PDB DBREF1 5HV3 A 1 867 UNP A0A0S2YLC8_LISMN DBREF2 5HV3 A A0A0S2YLC8 1 867 SEQADV 5HV3 MET A -11 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 ARG A -10 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 GLY A -9 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 SER A -8 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 HIS A -7 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 HIS A -6 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 HIS A -5 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 HIS A -4 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 HIS A -3 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 HIS A -2 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 GLY A -1 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 SER A 0 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV3 TYR A 527 UNP A0A0S2YLC GLY 527 ENGINEERED MUTATION SEQRES 1 A 879 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 879 LYS PRO TYR VAL LEU LYS PHE GLN GLU ILE ARG PRO HIS SEQRES 3 A 879 SER GLU ALA LEU VAL GLY GLY LYS GLY MET ASN LEU GLY SEQRES 4 A 879 ALA CYS SER ASN ILE GLU GLY VAL HIS VAL PRO ALA GLY SEQRES 5 A 879 PHE CYS LEU THR THR GLU ALA TYR LYS ARG THR LEU ALA SEQRES 6 A 879 GLU ASN ASN GLU PHE THR GLN LEU LEU GLN ARG LEU SER SEQRES 7 A 879 SER LEU LYS THR SER ASP MET ASP ALA ILE ARG GLU ILE SEQRES 8 A 879 SER GLU THR ILE ARG THR LEU ILE GLN HIS THR GLN ILE SEQRES 9 A 879 PRO SER GLU ILE ALA SER TYR MET ASP ALA THR LEU LEU SEQRES 10 A 879 ASP VAL GLY GLY TYR GLU MET PRO PHE ALA VAL ARG SER SEQRES 11 A 879 SER ALA THR ALA GLU ASP LEU PRO HIS ALA SER PHE ALA SEQRES 12 A 879 GLY GLN HIS ASP THR TYR LEU ASN ILE ILE GLY LYS ASP SEQRES 13 A 879 ALA LEU LEU GLN HIS ILE SER MET CYS TRP ALA SER LEU SEQRES 14 A 879 PHE THR GLU ARG ALA ILE ILE TYR ARG ILE GLN ASN GLN SEQRES 15 A 879 PHE ASP HIS ARG LYS VAL GLN LEU ALA VAL VAL ILE GLN SEQRES 16 A 879 GLN MET ILE SER PRO GLU ALA SER GLY ILE LEU PHE THR SEQRES 17 A 879 ALA ASP PRO ILE THR SER ASN ARG LYS SER LEU SER ILE SEQRES 18 A 879 ASP ALA SER PHE GLY LEU GLY GLU ALA LEU VAL SER GLY SEQRES 19 A 879 LEU VAL SER ALA ASP SER TYR THR VAL ARG GLU ASN THR SEQRES 20 A 879 ILE THR ASN LYS ILE ILE ALA THR LYS LYS LEU ALA ILE SEQRES 21 A 879 TYR SER LEU LYS GLU GLY GLY THR GLU THR ARG ILE LEU SEQRES 22 A 879 GLU LYS SER GLN GLN THR LYS GLN THR LEU THR ASP GLN SEQRES 23 A 879 GLN ILE ILE GLN LEU ALA LYS LEU GLY ARG LYS ILE GLU SEQRES 24 A 879 ALA TYR PHE GLY LYS PRO GLN ASP ILE GLU TRP CYS LEU SEQRES 25 A 879 ALA GLU GLY ALA PHE TYR ILE VAL GLN SER ARG PRO ILE SEQRES 26 A 879 THR THR LEU TYR PRO ILE PRO GLU VAL ASN GLU PRO GLY SEQRES 27 A 879 ASN ARG VAL TYR ILE SER VAL ALA HIS GLN GLN MET MET SEQRES 28 A 879 THR ASP ALA MET LYS PRO LEU GLY LEU SER PHE TYR LEU SEQRES 29 A 879 MET THR THR PRO ALA THR MET TYR THR ALA GLY GLY ARG SEQRES 30 A 879 LEU PHE VAL ASP ILE THR GLN SER LEU SER ALA LYS VAL SEQRES 31 A 879 SER ARG ASP MET MET VAL ASN SER LEU GLY GLN SER ASP SEQRES 32 A 879 PRO LEU ILE LYS ASP ALA LEU LEU THR VAL ILE ASN LYS SEQRES 33 A 879 LYS GLY PHE LEU PRO PRO LEU PRO THR GLU GLU ASN PRO SEQRES 34 A 879 SER HIS ALA THR VAL SER GLY LYS PRO PRO VAL ARG SER SEQRES 35 A 879 ILE PRO ASP SER SER SER VAL PHE GLU LEU VAL ARG ASN SEQRES 36 A 879 SER GLU ASN SER ILE LYS HIS LEU LYS GLN SER ILE GLU SEQRES 37 A 879 THR LYS SER GLY SER ASP LEU PHE ASP PHE ILE VAL GLU SEQRES 38 A 879 ASP LEU GLU GLU LEU LYS ARG VAL LEU PHE ASN PRO THR SEQRES 39 A 879 SER ILE ASP ALA ILE MET ALA GLY MET ASP ALA SER ALA SEQRES 40 A 879 TRP LEU ASN GLU HIS ILE TYR GLN TRP LEU GLY GLU LYS SEQRES 41 A 879 ASN VAL ALA ASP LYS LEU SER GLU SER ALA PRO ASN ASN SEQRES 42 A 879 ILE THR SER GLN MET TYR LEU GLU LEU LEU ASP VAL ALA SEQRES 43 A 879 ASP VAL ILE ARG PRO TYR PRO ALA VAL ARG ALA TYR LEU SEQRES 44 A 879 GLU GLN THR LYS ASN PRO ASP PHE MET ASN GLU LEU ALA SEQRES 45 A 879 THR LEU GLU GLY GLY ALA GLU THR LYS LYS ALA LEU GLU SEQRES 46 A 879 ASP TYR LEU GLN LYS TYR GLY MET ARG CYS ALA GLY GLU SEQRES 47 A 879 ILE ASP LEU THR LYS THR ARG TRP ILE GLU ASN PRO LEU SEQRES 48 A 879 THR LEU ILE PRO LEU ILE LEU SER ASN ILE LYS ASN PHE SEQRES 49 A 879 ASP SER SER ALA SER MET HIS LYS PHE ALA GLN GLY GLU SEQRES 50 A 879 LYS GLU ALA PHE HIS LYS GLU GLN GLU ILE LEU ARG ARG SEQRES 51 A 879 LEU GLN GLU LEU PRO ASP GLY GLU GLN LYS ALA MET GLU SEQRES 52 A 879 THR LYS GLU LYS ILE ASP ILE LEU ARG HIS PHE ILE GLY SEQRES 53 A 879 TYR ARG GLU TYR PRO LYS TYR GLY MET ILE ASN ARG TYR SEQRES 54 A 879 PHE ILE TYR LYS LEU ALA LEU LEU ARG ALA GLY GLU GLN SEQRES 55 A 879 LEU VAL LYS ASP GLY ILE LEU GLN GLU HIS GLU ASP ILE SEQRES 56 A 879 TYR PHE LEU TYR PHE GLU GLU LEU ARG GLU VAL VAL ARG SEQRES 57 A 879 THR GLY GLN VAL ASP TYR GLU LEU ILE ASN ALA ARG LYS SEQRES 58 A 879 ARG ASP PHE ALA THR PHE GLU LYS LEU THR PRO PRO ARG SEQRES 59 A 879 ILE LEU THR SER ASP GLY GLU MET ILE ASN GLY GLU TYR SEQRES 60 A 879 LYS ARG GLU ASN LEU PRO LYS ASP ALA ILE LEU GLY LEU SEQRES 61 A 879 PRO VAL SER SER GLY THR VAL GLU GLY ARG ALA ARG VAL SEQRES 62 A 879 ILE LEU GLU MET GLU LYS ALA ASP LEU GLU ASP GLY ASP SEQRES 63 A 879 ILE LEU VAL THR ALA TYR THR ASP PRO SER TRP THR PRO SEQRES 64 A 879 ALA PHE VAL SER ILE LYS GLY LEU VAL THR GLU VAL GLY SEQRES 65 A 879 GLY LEU MET THR HIS GLY ALA VAL ILE ALA ARG GLU TYR SEQRES 66 A 879 GLY LEU PRO ALA VAL VAL GLY VAL GLU ASN ALA THR THR SEQRES 67 A 879 ILE ILE LYS ASP GLY GLN GLN ILE ARG ILE ASN GLY THR SEQRES 68 A 879 GLU GLY TYR ILE GLU ILE LEU ASP HET ANP A 901 31 HET MG A 902 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG MG 2+ HELIX 1 AA1 VAL A 19 ASN A 31 1 13 HELIX 2 AA2 THR A 44 LEU A 52 1 9 HELIX 3 AA3 ASN A 55 SER A 67 1 13 HELIX 4 AA4 ASP A 72 GLN A 88 1 17 HELIX 5 AA5 GLU A 95 LEU A 105 1 11 HELIX 6 AA6 GLY A 142 SER A 156 1 15 HELIX 7 AA7 THR A 159 ASN A 169 1 11 HELIX 8 AA8 GLY A 216 GLY A 222 1 7 HELIX 9 AA9 GLU A 262 LYS A 268 5 7 HELIX 10 AB1 THR A 272 GLY A 291 1 20 HELIX 11 AB2 VAL A 333 GLN A 337 1 5 HELIX 12 AB3 LYS A 344 MET A 353 1 10 HELIX 13 AB4 THR A 371 SER A 375 5 5 HELIX 14 AB5 ALA A 376 SER A 390 1 15 HELIX 15 AB6 ASP A 391 ASN A 403 1 13 HELIX 16 AB7 SER A 434 GLU A 456 1 23 HELIX 17 AB8 SER A 459 PHE A 479 1 21 HELIX 18 AB9 ASN A 480 GLY A 506 1 27 HELIX 19 AC1 ASN A 509 LEU A 514 1 6 HELIX 20 AC2 ASN A 521 ARG A 538 1 18 HELIX 21 AC3 TYR A 540 THR A 550 1 11 HELIX 22 AC4 GLU A 567 GLY A 580 1 14 HELIX 23 AC5 ASN A 597 THR A 600 5 4 HELIX 24 AC6 LEU A 601 PHE A 612 1 12 HELIX 25 AC7 ALA A 616 GLN A 640 1 25 HELIX 26 AC8 ASP A 644 ILE A 663 1 20 HELIX 27 AC9 GLU A 667 ASP A 694 1 28 HELIX 28 AD1 GLU A 699 TYR A 704 5 6 HELIX 29 AD2 TYR A 707 GLU A 713 1 7 HELIX 30 AD3 ASP A 721 PHE A 735 1 15 HELIX 31 AD4 ASP A 802 PHE A 809 5 8 HELIX 32 AD5 THR A 824 TYR A 833 1 10 HELIX 33 AD6 ILE A 848 GLN A 852 5 5 SHEET 1 AA1 5 VAL A 5 LYS A 7 0 SHEET 2 AA1 5 GLY A 40 LEU A 43 -1 O CYS A 42 N LEU A 6 SHEET 3 AA1 5 VAL A 176 GLN A 184 -1 O VAL A 180 N LEU A 43 SHEET 4 AA1 5 PHE A 114 ALA A 122 -1 N ARG A 117 O VAL A 181 SHEET 5 AA1 5 THR A 136 ILE A 140 -1 O TYR A 137 N VAL A 116 SHEET 1 AA2 6 THR A 235 ILE A 240 0 SHEET 2 AA2 6 ASP A 227 ARG A 232 -1 N THR A 230 O THR A 237 SHEET 3 AA2 6 SER A 206 PHE A 213 -1 N ALA A 211 O ASP A 227 SHEET 4 AA2 6 ALA A 190 PHE A 195 -1 N PHE A 195 O SER A 208 SHEET 5 AA2 6 ASP A 295 ALA A 301 -1 O ILE A 296 N LEU A 194 SHEET 6 AA2 6 ALA A 304 ILE A 307 -1 O TYR A 306 N CYS A 299 SHEET 1 AA3 2 LEU A 246 SER A 250 0 SHEET 2 AA3 2 THR A 256 ILE A 260 -1 O GLU A 257 N TYR A 249 SHEET 1 AA4 5 MET A 359 ALA A 362 0 SHEET 2 AA4 5 ARG A 365 ASP A 369 -1 O PHE A 367 N TYR A 360 SHEET 3 AA4 5 VAL A 329 SER A 332 -1 N ILE A 331 O VAL A 368 SHEET 4 AA4 5 ILE A 743 THR A 745 -1 O LEU A 744 N TYR A 330 SHEET 5 AA4 5 MET A 750 ILE A 751 -1 O ILE A 751 N ILE A 743 SHEET 1 AA5 4 ILE A 765 LEU A 766 0 SHEET 2 AA5 4 TYR A 862 ILE A 865 -1 O ILE A 863 N ILE A 765 SHEET 3 AA5 4 ILE A 854 ASN A 857 -1 N ARG A 855 O GLU A 864 SHEET 4 AA5 4 THR A 774 GLY A 777 -1 N VAL A 775 O ILE A 856 SHEET 1 AA6 4 LEU A 768 SER A 771 0 SHEET 2 AA6 4 ALA A 837 VAL A 839 -1 O VAL A 839 N LEU A 768 SHEET 3 AA6 4 ILE A 812 THR A 817 1 N LEU A 815 O VAL A 838 SHEET 4 AA6 4 ASP A 794 THR A 798 1 N LEU A 796 O GLY A 814 LINK OE1 GLU A 297 MG MG A 902 1555 1555 1.93 LINK OE1 GLN A 309 MG MG A 902 1555 1555 2.51 LINK O1G ANP A 901 MG MG A 902 1555 1555 2.17 LINK O1B ANP A 901 MG MG A 902 1555 1555 2.42 LINK O3A ANP A 901 MG MG A 902 1555 1555 1.98 CISPEP 1 HIS A -7 HIS A -6 0 27.73 CISPEP 2 HIS A -2 GLY A -1 0 -5.34 CISPEP 3 GLY A 108 GLY A 109 0 -23.24 CISPEP 4 LEU A 223 VAL A 224 0 13.27 CISPEP 5 LEU A 408 PRO A 409 0 3.83 CISPEP 6 ILE A 782 LEU A 783 0 -3.13 SITE 1 AC1 18 LYS A 22 ARG A 117 ALA A 131 GLY A 132 SITE 2 AC1 18 THR A 136 LEU A 138 GLN A 183 GLN A 184 SITE 3 AC1 18 MET A 185 ILE A 186 GLY A 216 GLU A 217 SITE 4 AC1 18 VAL A 220 GLU A 297 VAL A 308 GLN A 309 SITE 5 AC1 18 ARG A 311 MG A 902 SITE 1 AC2 3 GLU A 297 GLN A 309 ANP A 901 CRYST1 58.686 127.990 140.819 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017040 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007101 0.00000