HEADER TRANSFERASE 28-JAN-16 5HV6 TITLE THE ATP BINDING DOMAIN OF RIFAMPIN PHOSPHOTRANSFERASE FROM LISTERIA TITLE 2 MONOCYTOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-315; COMPND 5 SYNONYM: RIFAMPIN PHOSPHOTRANSFERASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: ATE46_07415; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBIOTIC RESISTANCE, RIFAMPIN, PHOSPHOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHANG,X.QI REVDAT 6 06-NOV-24 5HV6 1 REMARK REVDAT 5 04-OCT-17 5HV6 1 REMARK REVDAT 4 27-SEP-17 5HV6 1 JRNL REMARK REVDAT 3 22-JUN-16 5HV6 1 JRNL REVDAT 2 06-APR-16 5HV6 1 JRNL REVDAT 1 30-MAR-16 5HV6 0 JRNL AUTH X.QI,W.LIN,M.MA,C.WANG,Y.HE,N.HE,J.GAO,H.ZHOU,Y.XIAO,Y.WANG, JRNL AUTH 2 P.ZHANG JRNL TITL STRUCTURAL BASIS OF RIFAMPIN INACTIVATION BY RIFAMPIN JRNL TITL 2 PHOSPHOTRANSFERASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 3803 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27001859 JRNL DOI 10.1073/PNAS.1523614113 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2668 - 6.4535 0.70 1791 196 0.2227 0.2679 REMARK 3 2 6.4535 - 5.1313 0.65 1655 194 0.2587 0.3050 REMARK 3 3 5.1313 - 4.4853 0.55 1387 156 0.1914 0.2669 REMARK 3 4 4.4853 - 4.0764 0.53 1373 153 0.2090 0.2424 REMARK 3 5 4.0764 - 3.7849 0.53 1358 147 0.2489 0.3112 REMARK 3 6 3.7849 - 3.5621 0.53 1334 148 0.2608 0.2955 REMARK 3 7 3.5621 - 3.3840 0.50 1286 144 0.2624 0.3484 REMARK 3 8 3.3840 - 3.2369 0.42 1064 116 0.2992 0.3596 REMARK 3 9 3.2369 - 3.1124 0.32 833 86 0.3190 0.3756 REMARK 3 10 3.1124 - 3.0051 0.21 536 60 0.3211 0.4195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 4749 REMARK 3 ANGLE : 2.028 6413 REMARK 3 CHIRALITY : 0.107 750 REMARK 3 PLANARITY : 0.009 815 REMARK 3 DIHEDRAL : 19.451 1764 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15177 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V) PEG3350, 200 MM SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.50350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.15200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.08850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.15200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.50350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.08850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 124 REMARK 465 LEU A 125 REMARK 465 PRO A 126 REMARK 465 HIS A 127 REMARK 465 ALA A 128 REMARK 465 THR A 315 REMARK 465 MET B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 SER B 67 REMARK 465 LEU B 68 REMARK 465 LYS B 69 REMARK 465 THR B 70 REMARK 465 SER B 71 REMARK 465 ASP B 72 REMARK 465 MET B 73 REMARK 465 ASP B 74 REMARK 465 ALA B 75 REMARK 465 ASP B 124 REMARK 465 LEU B 125 REMARK 465 PRO B 126 REMARK 465 HIS B 127 REMARK 465 ALA B 128 REMARK 465 SER B 129 REMARK 465 PHE B 130 REMARK 465 ALA B 131 REMARK 465 GLY B 132 REMARK 465 GLN B 133 REMARK 465 PRO B 199 REMARK 465 ILE B 200 REMARK 465 SER B 221 REMARK 465 GLY B 222 REMARK 465 ILE B 313 REMARK 465 THR B 314 REMARK 465 THR B 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 0 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ARG B 77 OE2 GLU B 160 1.60 REMARK 500 CE LYS A 49 NE2 GLN A 177 1.62 REMARK 500 O LEU B 157 NH1 ARG B 166 1.65 REMARK 500 OE1 GLN A 294 O ARG A 311 1.67 REMARK 500 CG2 ILE B 286 OE1 GLN B 294 1.67 REMARK 500 C ALA A 75 CD1 ILE A 79 1.68 REMARK 500 CB PRO B 13 ND1 HIS B 14 1.73 REMARK 500 NH2 ARG A 174 OE1 GLU B 217 1.74 REMARK 500 O GLU B 16 CG2 THR B 121 1.77 REMARK 500 N ILE A 76 CD1 ILE A 79 1.78 REMARK 500 CD1 TYR B 110 CB LYS B 143 1.82 REMARK 500 O GLU B 81 OG1 THR B 85 1.85 REMARK 500 N ASN B 56 OG1 THR B 59 1.87 REMARK 500 C LYS A 49 CB ALA A 53 1.89 REMARK 500 O LEU A 86 OG1 THR A 90 1.90 REMARK 500 CE1 TYR B 110 CB LYS B 143 1.90 REMARK 500 OD1 ASP B 101 OH TYR B 110 1.96 REMARK 500 OD2 ASP A 135 OG SER A 156 1.99 REMARK 500 OD1 ASP A 198 CD1 ILE A 200 2.01 REMARK 500 O ASN A 55 OG1 THR A 59 2.03 REMARK 500 CG2 THR B 196 CD GLU B 287 2.05 REMARK 500 CD2 LEU B 65 CG2 ILE B 79 2.06 REMARK 500 CG ARG B 77 CD GLU B 160 2.07 REMARK 500 CG1 VAL B 220 CD1 LEU B 223 2.08 REMARK 500 O GLY B 23 N GLY B 27 2.08 REMARK 500 O ILE B 79 OG1 THR B 82 2.10 REMARK 500 CA LYS A 263 CG GLN A 266 2.11 REMARK 500 CB LYS B 22 OG SER B 119 2.11 REMARK 500 O ALA A 75 CG1 ILE A 79 2.13 REMARK 500 CG2 THR B 196 OE2 GLU B 287 2.13 REMARK 500 CB LEU A 6 CD1 ILE A 11 2.13 REMARK 500 CA ARG B 77 OE2 GLU B 160 2.14 REMARK 500 CG2 THR B 196 OE1 GLU B 287 2.15 REMARK 500 C ILE A 76 CD1 ILE A 79 2.16 REMARK 500 CG2 VAL B 220 CB LEU B 223 2.18 REMARK 500 OD1 ASP A 101 OH TYR A 110 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 182 C ILE A 182 O -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 33 N - CA - C ANGL. DEV. = 25.6 DEGREES REMARK 500 ALA A 53 CB - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 ALA A 53 N - CA - C ANGL. DEV. = -28.1 DEGREES REMARK 500 GLU A 54 N - CA - CB ANGL. DEV. = 20.7 DEGREES REMARK 500 LYS A 69 CB - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 MET A 73 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 MET A 73 N - CA - C ANGL. DEV. = 23.3 DEGREES REMARK 500 GLU A 233 CB - CA - C ANGL. DEV. = -38.5 DEGREES REMARK 500 ASN A 234 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 SER A 264 N - CA - C ANGL. DEV. = -19.8 DEGREES REMARK 500 PRO A 312 CA - N - CD ANGL. DEV. = -8.5 DEGREES REMARK 500 SER B 15 CB - CA - C ANGL. DEV. = -18.8 DEGREES REMARK 500 ASN B 56 CB - CA - C ANGL. DEV. = -33.7 DEGREES REMARK 500 ASN B 56 N - CA - C ANGL. DEV. = 29.6 DEGREES REMARK 500 GLU B 57 C - N - CA ANGL. DEV. = 29.8 DEGREES REMARK 500 THR B 159 C - N - CA ANGL. DEV. = 19.7 DEGREES REMARK 500 THR B 159 CA - C - N ANGL. DEV. = 14.8 DEGREES REMARK 500 THR B 159 O - C - N ANGL. DEV. = -17.6 DEGREES REMARK 500 GLU B 253 C - N - CA ANGL. DEV. = 20.9 DEGREES REMARK 500 GLU B 253 CB - CA - C ANGL. DEV. = -31.3 DEGREES REMARK 500 GLU B 253 CA - C - N ANGL. DEV. = 16.6 DEGREES REMARK 500 GLU B 253 O - C - N ANGL. DEV. = -15.0 DEGREES REMARK 500 GLY B 254 C - N - CA ANGL. DEV. = 29.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 54 62.35 67.14 REMARK 500 SER A 67 44.22 -79.31 REMARK 500 LEU A 68 -159.40 -110.08 REMARK 500 ILE A 76 -9.86 -57.59 REMARK 500 ASP A 198 116.93 -37.73 REMARK 500 SER A 202 6.49 80.37 REMARK 500 ALA A 211 112.81 -160.50 REMARK 500 GLU A 233 61.18 31.09 REMARK 500 GLU A 302 5.38 57.47 REMARK 500 SER B 15 1.12 83.65 REMARK 500 ASN B 56 -1.69 84.51 REMARK 500 SER B 94 -33.39 -34.00 REMARK 500 GLU B 95 -70.84 -68.18 REMARK 500 ARG B 117 -159.03 -120.51 REMARK 500 ARG B 204 -9.85 81.95 REMARK 500 GLU B 253 121.70 -38.29 REMARK 500 GLU B 302 76.34 39.05 REMARK 500 SER B 310 124.70 -175.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 33 GLY A 34 48.88 REMARK 500 ASN B 56 GLU B 57 126.23 REMARK 500 GLY B 216 GLU B 217 138.54 REMARK 500 LYS B 252 GLU B 253 122.49 REMARK 500 GLU B 253 GLY B 254 -110.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 204 12.91 REMARK 500 LYS A 205 -12.12 REMARK 500 THR B 159 13.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HV1 RELATED DB: PDB REMARK 900 RELATED ID: 5HV2 RELATED DB: PDB REMARK 900 RELATED ID: 5HV3 RELATED DB: PDB DBREF1 5HV6 A 1 315 UNP A0A0S2YLC8_LISMN DBREF2 5HV6 A A0A0S2YLC8 1 315 DBREF1 5HV6 B 1 315 UNP A0A0S2YLC8_LISMN DBREF2 5HV6 B A0A0S2YLC8 1 315 SEQADV 5HV6 MET A -11 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 ARG A -10 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 GLY A -9 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 SER A -8 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS A -7 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS A -6 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS A -5 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS A -4 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS A -3 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS A -2 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 GLY A -1 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 SER A 0 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 MET B -11 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 ARG B -10 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 GLY B -9 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 SER B -8 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS B -7 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS B -6 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS B -5 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS B -4 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS B -3 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 HIS B -2 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 GLY B -1 UNP A0A0S2YLC EXPRESSION TAG SEQADV 5HV6 SER B 0 UNP A0A0S2YLC EXPRESSION TAG SEQRES 1 A 327 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 327 LYS PRO TYR VAL LEU LYS PHE GLN GLU ILE ARG PRO HIS SEQRES 3 A 327 SER GLU ALA LEU VAL GLY GLY LYS GLY MET ASN LEU GLY SEQRES 4 A 327 ALA CYS SER ASN ILE GLU GLY VAL HIS VAL PRO ALA GLY SEQRES 5 A 327 PHE CYS LEU THR THR GLU ALA TYR LYS ARG THR LEU ALA SEQRES 6 A 327 GLU ASN ASN GLU PHE THR GLN LEU LEU GLN ARG LEU SER SEQRES 7 A 327 SER LEU LYS THR SER ASP MET ASP ALA ILE ARG GLU ILE SEQRES 8 A 327 SER GLU THR ILE ARG THR LEU ILE GLN HIS THR GLN ILE SEQRES 9 A 327 PRO SER GLU ILE ALA SER TYR MET ASP ALA THR LEU LEU SEQRES 10 A 327 ASP VAL GLY GLY TYR GLU MET PRO PHE ALA VAL ARG SER SEQRES 11 A 327 SER ALA THR ALA GLU ASP LEU PRO HIS ALA SER PHE ALA SEQRES 12 A 327 GLY GLN HIS ASP THR TYR LEU ASN ILE ILE GLY LYS ASP SEQRES 13 A 327 ALA LEU LEU GLN HIS ILE SER MET CYS TRP ALA SER LEU SEQRES 14 A 327 PHE THR GLU ARG ALA ILE ILE TYR ARG ILE GLN ASN GLN SEQRES 15 A 327 PHE ASP HIS ARG LYS VAL GLN LEU ALA VAL VAL ILE GLN SEQRES 16 A 327 GLN MET ILE SER PRO GLU ALA SER GLY ILE LEU PHE THR SEQRES 17 A 327 ALA ASP PRO ILE THR SER ASN ARG LYS SER LEU SER ILE SEQRES 18 A 327 ASP ALA SER PHE GLY LEU GLY GLU ALA LEU VAL SER GLY SEQRES 19 A 327 LEU VAL SER ALA ASP SER TYR THR VAL ARG GLU ASN THR SEQRES 20 A 327 ILE THR ASN LYS ILE ILE ALA THR LYS LYS LEU ALA ILE SEQRES 21 A 327 TYR SER LEU LYS GLU GLY GLY THR GLU THR ARG ILE LEU SEQRES 22 A 327 GLU LYS SER GLN GLN THR LYS GLN THR LEU THR ASP GLN SEQRES 23 A 327 GLN ILE ILE GLN LEU ALA LYS LEU GLY ARG LYS ILE GLU SEQRES 24 A 327 ALA TYR PHE GLY LYS PRO GLN ASP ILE GLU TRP CYS LEU SEQRES 25 A 327 ALA GLU GLY ALA PHE TYR ILE VAL GLN SER ARG PRO ILE SEQRES 26 A 327 THR THR SEQRES 1 B 327 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 327 LYS PRO TYR VAL LEU LYS PHE GLN GLU ILE ARG PRO HIS SEQRES 3 B 327 SER GLU ALA LEU VAL GLY GLY LYS GLY MET ASN LEU GLY SEQRES 4 B 327 ALA CYS SER ASN ILE GLU GLY VAL HIS VAL PRO ALA GLY SEQRES 5 B 327 PHE CYS LEU THR THR GLU ALA TYR LYS ARG THR LEU ALA SEQRES 6 B 327 GLU ASN ASN GLU PHE THR GLN LEU LEU GLN ARG LEU SER SEQRES 7 B 327 SER LEU LYS THR SER ASP MET ASP ALA ILE ARG GLU ILE SEQRES 8 B 327 SER GLU THR ILE ARG THR LEU ILE GLN HIS THR GLN ILE SEQRES 9 B 327 PRO SER GLU ILE ALA SER TYR MET ASP ALA THR LEU LEU SEQRES 10 B 327 ASP VAL GLY GLY TYR GLU MET PRO PHE ALA VAL ARG SER SEQRES 11 B 327 SER ALA THR ALA GLU ASP LEU PRO HIS ALA SER PHE ALA SEQRES 12 B 327 GLY GLN HIS ASP THR TYR LEU ASN ILE ILE GLY LYS ASP SEQRES 13 B 327 ALA LEU LEU GLN HIS ILE SER MET CYS TRP ALA SER LEU SEQRES 14 B 327 PHE THR GLU ARG ALA ILE ILE TYR ARG ILE GLN ASN GLN SEQRES 15 B 327 PHE ASP HIS ARG LYS VAL GLN LEU ALA VAL VAL ILE GLN SEQRES 16 B 327 GLN MET ILE SER PRO GLU ALA SER GLY ILE LEU PHE THR SEQRES 17 B 327 ALA ASP PRO ILE THR SER ASN ARG LYS SER LEU SER ILE SEQRES 18 B 327 ASP ALA SER PHE GLY LEU GLY GLU ALA LEU VAL SER GLY SEQRES 19 B 327 LEU VAL SER ALA ASP SER TYR THR VAL ARG GLU ASN THR SEQRES 20 B 327 ILE THR ASN LYS ILE ILE ALA THR LYS LYS LEU ALA ILE SEQRES 21 B 327 TYR SER LEU LYS GLU GLY GLY THR GLU THR ARG ILE LEU SEQRES 22 B 327 GLU LYS SER GLN GLN THR LYS GLN THR LEU THR ASP GLN SEQRES 23 B 327 GLN ILE ILE GLN LEU ALA LYS LEU GLY ARG LYS ILE GLU SEQRES 24 B 327 ALA TYR PHE GLY LYS PRO GLN ASP ILE GLU TRP CYS LEU SEQRES 25 B 327 ALA GLU GLY ALA PHE TYR ILE VAL GLN SER ARG PRO ILE SEQRES 26 B 327 THR THR FORMUL 3 HOH *(H2 O) HELIX 1 AA1 SER A 15 GLU A 33 1 19 HELIX 2 AA2 THR A 44 LEU A 52 1 9 HELIX 3 AA3 ASN A 55 SER A 67 1 13 HELIX 4 AA4 ASP A 74 HIS A 89 1 16 HELIX 5 AA5 PRO A 93 LEU A 105 1 13 HELIX 6 AA6 GLY A 142 LEU A 157 1 16 HELIX 7 AA7 THR A 159 ASN A 169 1 11 HELIX 8 AA8 ASP A 172 VAL A 176 5 5 HELIX 9 AA9 GLY A 216 SER A 221 1 6 HELIX 10 AB1 SER A 264 LYS A 268 5 5 HELIX 11 AB2 THR A 272 GLY A 291 1 20 HELIX 12 AB3 VAL B 19 ASN B 31 1 13 HELIX 13 AB4 THR B 44 ALA B 53 1 10 HELIX 14 AB5 GLU B 57 SER B 66 1 10 HELIX 15 AB6 ARG B 77 THR B 90 1 14 HELIX 16 AB7 GLU B 95 GLY B 108 1 14 HELIX 17 AB8 GLY B 142 SER B 156 1 15 HELIX 18 AB9 THR B 159 GLN B 168 1 10 HELIX 19 AC1 ASP B 172 VAL B 176 5 5 HELIX 20 AC2 THR B 272 GLY B 291 1 20 SHEET 1 AA1 4 GLY A 40 LEU A 43 0 SHEET 2 AA1 4 ALA A 179 GLN A 184 -1 O ILE A 182 N PHE A 41 SHEET 3 AA1 4 PRO A 113 SER A 119 -1 N ARG A 117 O VAL A 181 SHEET 4 AA1 4 ILE A 140 ILE A 141 -1 O ILE A 140 N PHE A 114 SHEET 1 AA2 6 THR A 235 ASN A 238 0 SHEET 2 AA2 6 ASP A 227 ARG A 232 -1 N THR A 230 O ASN A 238 SHEET 3 AA2 6 SER A 206 SER A 212 -1 N LEU A 207 O VAL A 231 SHEET 4 AA2 6 ALA A 190 PHE A 195 -1 N SER A 191 O SER A 212 SHEET 5 AA2 6 GLN A 294 ALA A 301 -1 O ILE A 296 N LEU A 194 SHEET 6 AA2 6 ALA A 304 PRO A 312 -1 O ALA A 304 N ALA A 301 SHEET 1 AA3 2 LEU A 246 SER A 250 0 SHEET 2 AA3 2 THR A 256 ILE A 260 -1 O GLU A 257 N TYR A 249 SHEET 1 AA4 4 GLY B 40 LEU B 43 0 SHEET 2 AA4 4 VAL B 180 GLN B 184 -1 O ILE B 182 N PHE B 41 SHEET 3 AA4 4 PHE B 114 VAL B 116 -1 N ALA B 115 O GLN B 183 SHEET 4 AA4 4 TYR B 137 ILE B 140 -1 O ILE B 140 N PHE B 114 SHEET 1 AA5 6 THR B 235 ILE B 236 0 SHEET 2 AA5 6 ASP B 227 ARG B 232 -1 N ARG B 232 O THR B 235 SHEET 3 AA5 6 SER B 206 PHE B 213 -1 N LEU B 207 O VAL B 231 SHEET 4 AA5 6 ALA B 190 PHE B 195 -1 N SER B 191 O SER B 212 SHEET 5 AA5 6 ILE B 296 ALA B 301 -1 O LEU B 300 N ALA B 190 SHEET 6 AA5 6 ALA B 304 SER B 310 -1 O TYR B 306 N CYS B 299 SHEET 1 AA6 2 LEU B 246 SER B 250 0 SHEET 2 AA6 2 THR B 256 ILE B 260 -1 O GLU B 257 N TYR B 249 LINK NZ LYS A 22 OE1 GLN A 309 1555 1555 1.21 LINK O LYS A 49 CB ALA A 53 1555 1555 1.20 LINK ND2 ASN A 56 NZ LYS B 245 1555 1555 1.20 LINK O ALA A 75 CD1 ILE A 79 1555 1555 1.33 LINK CA ILE A 76 CD1 ILE A 79 1555 1555 1.65 LINK O ARG A 174 CD1 LEU B 223 1555 1555 1.20 LINK CB ARG B 77 OE2 GLU B 160 1555 1555 1.44 LINK O PHE B 195 CD1 LEU B 207 1555 1555 1.43 CISPEP 1 PRO A 13 HIS A 14 0 0.21 CISPEP 2 GLY A 34 VAL A 35 0 -4.27 CISPEP 3 VAL A 107 GLY A 108 0 5.26 CISPEP 4 ILE A 313 THR A 314 0 5.49 CISPEP 5 PRO B 13 HIS B 14 0 -0.08 CISPEP 6 HIS B 14 SER B 15 0 3.00 CISPEP 7 GLU B 33 GLY B 34 0 0.28 CISPEP 8 ASN B 55 ASN B 56 0 5.57 CISPEP 9 VAL B 107 GLY B 108 0 -2.67 CISPEP 10 ASN B 169 GLN B 170 0 -1.19 CISPEP 11 ALA B 218 LEU B 219 0 1.72 CRYST1 85.007 86.177 100.304 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011764 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009970 0.00000