HEADER LYASE 28-JAN-16 5HVN TITLE 3.0 ANGSTROM CRYSTAL STRUCTURE OF 3-DEHYDROQUINATE SYNTHASE (AROB) TITLE 2 FROM FRANCISELLA TULARENSIS IN COMPLEX WITH NAD. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.3.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS SOURCE 3 (STRAIN SCHU S4 / SCHU 4); SOURCE 4 ORGANISM_TAXID: 177416; SOURCE 5 STRAIN: SCHU S4 / SCHU 4; SOURCE 6 GENE: AROB, FTT_1154C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS 3-DEHYDROQUINATE SYNTHASE, NAD, SHIKIMATE PATHWAY, STRUCTURAL KEYWDS 2 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 3 CSGID, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,S.H.LIGHT,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,M.ZHOU, AUTHOR 2 S.GRIMSHAW,K.KWON,A.JOACHIMIAK,W.F.ANDERSON,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 27-SEP-23 5HVN 1 REMARK REVDAT 1 10-FEB-16 5HVN 0 JRNL AUTH G.MINASOV,S.H.LIGHT,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,M.ZHOU, JRNL AUTH 2 S.GRIMSHAW,K.KWON,A.JOACHIMIAK,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 3.0 ANGSTROM CRYSTAL STRUCTURE OF 3-DEHYDROQUINATE SYNTHASE JRNL TITL 2 (AROB) FROM FRANCISELLA TULARENSIS IN COMPLEX WITH NAD. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 968 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 94.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.99000 REMARK 3 B22 (A**2) : -1.99000 REMARK 3 B33 (A**2) : 6.44000 REMARK 3 B12 (A**2) : -0.99000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.331 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.475 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2885 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3906 ; 1.649 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 2.196 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;30.772 ;25.276 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;10.805 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.500 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 455 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2114 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1418 ; 3.987 ; 5.639 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1769 ; 6.437 ; 8.435 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1466 ; 5.602 ; 5.992 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4423 ;11.729 ;47.522 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): -51.7703 -47.2833 -6.7592 REMARK 3 T TENSOR REMARK 3 T11: 0.5142 T22: 0.4761 REMARK 3 T33: 0.1628 T12: 0.1548 REMARK 3 T13: -0.1255 T23: -0.2047 REMARK 3 L TENSOR REMARK 3 L11: 1.5748 L22: 4.4724 REMARK 3 L33: 3.6900 L12: -1.0813 REMARK 3 L13: -0.2378 L23: 0.3678 REMARK 3 S TENSOR REMARK 3 S11: -0.1246 S12: -0.7157 S13: 0.3454 REMARK 3 S21: 0.6942 S22: 0.2079 S23: -0.4616 REMARK 3 S31: -0.3077 S32: 0.4125 S33: -0.0833 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): -66.2222 -45.2747 -11.7773 REMARK 3 T TENSOR REMARK 3 T11: 0.2543 T22: 0.2197 REMARK 3 T33: 0.0952 T12: 0.1345 REMARK 3 T13: 0.0495 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 3.0807 L22: 6.2577 REMARK 3 L33: 2.4667 L12: -1.4143 REMARK 3 L13: 0.3224 L23: -2.4567 REMARK 3 S TENSOR REMARK 3 S11: -0.1017 S12: -0.5374 S13: -0.0684 REMARK 3 S21: 0.7335 S22: 0.3406 S23: 0.5655 REMARK 3 S31: -0.1666 S32: -0.1056 S33: -0.2388 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): -56.7712 -45.7677 -18.6566 REMARK 3 T TENSOR REMARK 3 T11: 0.3033 T22: 0.1905 REMARK 3 T33: 0.1303 T12: 0.0904 REMARK 3 T13: -0.0051 T23: -0.1322 REMARK 3 L TENSOR REMARK 3 L11: 3.0986 L22: 3.5713 REMARK 3 L33: 1.4837 L12: -1.5526 REMARK 3 L13: -0.4146 L23: -0.6882 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.2287 S13: 0.0458 REMARK 3 S21: 0.2546 S22: 0.0901 S23: -0.1661 REMARK 3 S31: -0.2701 S32: 0.0891 S33: -0.0698 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): -41.1926 -56.5112 -21.9399 REMARK 3 T TENSOR REMARK 3 T11: 0.1668 T22: 0.4521 REMARK 3 T33: 0.3632 T12: 0.0946 REMARK 3 T13: -0.0959 T23: -0.1610 REMARK 3 L TENSOR REMARK 3 L11: 2.7004 L22: 2.1811 REMARK 3 L33: 1.5378 L12: -1.2506 REMARK 3 L13: -1.8670 L23: 1.1150 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: -0.2699 S13: 0.2252 REMARK 3 S21: 0.2617 S22: 0.2085 S23: -0.6146 REMARK 3 S31: 0.0236 S32: 0.4474 S33: -0.2323 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): -49.7391 -62.9969 -36.9067 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.3564 REMARK 3 T33: 0.4135 T12: 0.1485 REMARK 3 T13: 0.0365 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.3610 L22: 2.0685 REMARK 3 L33: 4.0390 L12: 0.6321 REMARK 3 L13: -1.7496 L23: -0.2159 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: 0.1953 S13: 0.5017 REMARK 3 S21: -0.0037 S22: 0.1801 S23: -0.0802 REMARK 3 S31: 0.0089 S32: -0.4580 S33: -0.2196 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 322 A 359 REMARK 3 ORIGIN FOR THE GROUP (A): -47.3681 -55.9191 -45.3004 REMARK 3 T TENSOR REMARK 3 T11: 0.1748 T22: 0.2431 REMARK 3 T33: 0.2524 T12: 0.1465 REMARK 3 T13: 0.0915 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 6.4780 L22: 4.1299 REMARK 3 L33: 7.2801 L12: 2.4138 REMARK 3 L13: 1.3684 L23: 1.7055 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.1635 S13: 0.4809 REMARK 3 S21: -0.4981 S22: 0.0955 S23: -0.0834 REMARK 3 S31: -0.5855 S32: -0.5629 S33: -0.0860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5HVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : BERYLLIUM LENSES REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18744 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 40.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 5EKS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.5 MG/ML, 0.5 M NACL, 0.1M REMARK 280 TRIS-HCL (PH 8.3); CONDITION:0.2M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 ACETATE (PH 5.3)., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.10950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.10950 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.10950 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 48.10950 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.10950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.10950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -48.10950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 531 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 233 REMARK 465 LYS A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 LYS A 323 REMARK 465 LYS A 324 REMARK 465 ASN A 325 REMARK 465 SER A 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 93 OG1 THR A 97 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -1 61.79 -106.53 REMARK 500 LEU A 57 -82.41 -101.14 REMARK 500 VAL A 58 33.37 29.46 REMARK 500 ASP A 59 45.12 -98.82 REMARK 500 TYR A 118 109.85 -58.90 REMARK 500 ASN A 258 30.01 73.69 REMARK 500 LYS A 328 -169.02 59.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP02414 RELATED DB: TARGETTRACK DBREF 5HVN A 1 359 UNP Q5NFS1 AROB_FRATT 1 359 SEQADV 5HVN SER A -2 UNP Q5NFS1 EXPRESSION TAG SEQADV 5HVN ASN A -1 UNP Q5NFS1 EXPRESSION TAG SEQADV 5HVN ALA A 0 UNP Q5NFS1 EXPRESSION TAG SEQRES 1 A 362 SER ASN ALA MET ILE SER LYS LEU SER VAL ASN PRO THR SEQRES 2 A 362 PHE SER PRO SER TYR ASN ILE ILE VAL ASP SER VAL LEU SEQRES 3 A 362 ASP PHE SER HIS ILE LEU GLU TYR VAL THR ASN LYS GLN SEQRES 4 A 362 VAL LEU VAL VAL THR ASN THR THR VAL ALA LYS LEU TYR SEQRES 5 A 362 LEU THR LYS PHE LEU ALA ALA LEU VAL ASP ASP LEU ASP SEQRES 6 A 362 VAL ARG THR CYS ILE LEU GLU ASP GLY GLU GLN TYR LYS SEQRES 7 A 362 SER GLN GLN SER LEU ASP LYS ILE LEU SER THR LEU LEU SEQRES 8 A 362 GLU ASN HIS PHE THR ARG ASN SER THR VAL LEU VAL ALA SEQRES 9 A 362 LEU GLY GLY GLY VAL ILE GLY ASP ILE THR GLY PHE ALA SEQRES 10 A 362 ALA ALA ILE TYR GLN ARG GLY ILE ASP PHE ILE GLN ILE SEQRES 11 A 362 PRO THR THR LEU LEU SER GLN VAL ASP SER SER VAL GLY SEQRES 12 A 362 GLY LYS THR ALA ILE ASN HIS GLN LEU GLY LYS ASN MET SEQRES 13 A 362 ILE GLY ALA PHE TYR GLN PRO LYS VAL VAL TYR THR SER SEQRES 14 A 362 ILE GLU PHE TYR LYS THR LEU PRO GLN ARG GLU TYR ILE SEQRES 15 A 362 ALA GLY MET ALA GLU VAL VAL LYS TYR ALA PHE ILE SER SEQRES 16 A 362 LYS ASP PHE TYR LEU TRP LEU ASP SER ASN ARG ASP LYS SEQRES 17 A 362 ILE LEU ALA LYS ASP SER VAL THR LEU ILE GLU MET VAL SEQRES 18 A 362 LYS ARG SER CYS GLN ILE LYS ALA GLN VAL VAL ALA MET SEQRES 19 A 362 ASP GLU LYS GLU LEU THR GLY ALA ARG ALA ILE LEU ASN SEQRES 20 A 362 PHE GLY HIS THR PHE GLY HIS ALA ILE GLU LYS CYS GLN SEQRES 21 A 362 ASN TYR ARG GLY LEU LYS HIS GLY GLU ALA VAL GLY VAL SEQRES 22 A 362 GLY MET ALA GLN ALA ILE ASP PHE SER HIS TYR LEU GLY SEQRES 23 A 362 LEU ILE SER GLN GLN GLN ALA LYS ASP PHE ASN ASP PHE SEQRES 24 A 362 ILE VAL SER PHE GLY ILE SER ILE ASP PHE PRO ASN ASP SEQRES 25 A 362 ILE CYS GLN LYS GLU PHE LEU GLU ALA MET LEU LEU ASP SEQRES 26 A 362 LYS LYS ASN SER ASN LYS GLU LEU LYS PHE ILE LEU ILE SEQRES 27 A 362 GLU ASN ILE GLY SER LEU SER LEU GLN LYS GLN SER LYS SEQRES 28 A 362 ASN GLU LEU GLU GLN PHE LEU ASP ILE SER ARG HET NAD A 401 44 HET CL A 402 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CL CHLORIDE ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 CL CL 1- FORMUL 4 HOH *56(H2 O) HELIX 1 AA1 ASP A 24 VAL A 32 5 9 HELIX 2 AA2 THR A 43 VAL A 58 1 16 HELIX 3 AA3 GLY A 71 LYS A 75 5 5 HELIX 4 AA4 SER A 76 ASN A 90 1 15 HELIX 5 AA5 GLY A 104 TYR A 118 1 15 HELIX 6 AA6 GLN A 119 GLY A 121 5 3 HELIX 7 AA7 THR A 130 SER A 137 1 8 HELIX 8 AA8 GLU A 168 THR A 172 5 5 HELIX 9 AA9 PRO A 174 SER A 192 1 19 HELIX 10 AB1 SER A 192 ALA A 208 1 17 HELIX 11 AB2 ASP A 210 ALA A 230 1 21 HELIX 12 AB3 GLY A 238 PHE A 245 5 8 HELIX 13 AB4 GLY A 246 ASN A 258 1 13 HELIX 14 AB5 LYS A 263 LEU A 282 1 20 HELIX 15 AB6 SER A 286 PHE A 300 1 15 HELIX 16 AB7 CYS A 311 LEU A 321 1 11 HELIX 17 AB8 SER A 347 ARG A 359 1 13 SHEET 1 AA1 7 ILE A 2 VAL A 7 0 SHEET 2 AA1 7 TYR A 15 ASP A 20 -1 O TYR A 15 N VAL A 7 SHEET 3 AA1 7 VAL A 162 SER A 166 1 O VAL A 163 N ILE A 18 SHEET 4 AA1 7 ASP A 123 PRO A 128 1 N GLN A 126 O TYR A 164 SHEET 5 AA1 7 THR A 97 GLY A 103 1 N ALA A 101 O ILE A 125 SHEET 6 AA1 7 GLN A 36 ASN A 42 1 N VAL A 40 O VAL A 100 SHEET 7 AA1 7 VAL A 63 LEU A 68 1 O ARG A 64 N VAL A 37 SHEET 1 AA2 2 LYS A 142 HIS A 147 0 SHEET 2 AA2 2 GLY A 150 PHE A 157 -1 O ILE A 154 N ILE A 145 SHEET 1 AA3 2 LYS A 331 ASN A 337 0 SHEET 2 AA3 2 SER A 340 LYS A 345 -1 O GLN A 344 N PHE A 332 SITE 1 AC1 24 ASN A 42 THR A 44 LEU A 48 TYR A 49 SITE 2 AC1 24 ASP A 70 GLU A 72 LYS A 75 GLY A 104 SITE 3 AC1 24 GLY A 105 VAL A 106 ASP A 109 THR A 129 SITE 4 AC1 24 THR A 130 LEU A 132 ASP A 136 SER A 137 SITE 5 AC1 24 LYS A 142 ASN A 152 PHE A 169 THR A 172 SITE 6 AC1 24 LEU A 173 GLU A 177 HOH A 507 HOH A 508 SITE 1 AC2 3 GLY A 246 THR A 248 ILE A 333 CRYST1 178.978 178.978 96.219 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005587 0.003226 0.000000 0.00000 SCALE2 0.000000 0.006452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010393 0.00000