HEADER TRANSFERASE/TRANSCRIPTION 28-JAN-16 5HVY TITLE CDK8/CYCC IN COMPLEX WITH COMPOUND 20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-403; COMPND 5 SYNONYM: CELL DIVISION PROTEIN KINASE 8,MEDIATOR COMPLEX SUBUNIT COMPND 6 CDK8,MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT CDK8,PROTEIN COMPND 7 KINASE K35; COMPND 8 EC: 2.7.11.22,2.7.11.23; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CYCLIN-C; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: SRB11 HOMOLOG,HSRB11; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CCNC; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.KIEFER,E.V.SCHNEIDER,K.MASKOS,P.BERGERON,M.KOEHLER REVDAT 3 06-MAR-24 5HVY 1 REMARK REVDAT 2 06-JUL-16 5HVY 1 JRNL REVDAT 1 20-APR-16 5HVY 0 JRNL AUTH P.BERGERON,M.F.KOEHLER,E.M.BLACKWOOD,K.BOWMAN,K.CLARK, JRNL AUTH 2 R.FIRESTEIN,J.R.KIEFER,K.MASKOS,M.L.MCCLELAND,L.ORREN, JRNL AUTH 3 S.RAMASWAMY,L.SALPHATI,S.SCHMIDT,E.V.SCHNEIDER,J.WU, JRNL AUTH 4 M.BERESINI JRNL TITL DESIGN AND DEVELOPMENT OF A SERIES OF POTENT AND SELECTIVE JRNL TITL 2 TYPE II INHIBITORS OF CDK8. JRNL REF ACS MED.CHEM.LETT. V. 7 595 2016 JRNL REFN ISSN 1948-5875 JRNL PMID 27326333 JRNL DOI 10.1021/ACSMEDCHEMLETT.6B00044 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 36023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2742 - 4.7866 0.91 4411 144 0.1777 0.1893 REMARK 3 2 4.7866 - 3.7999 0.93 4326 120 0.1487 0.1729 REMARK 3 3 3.7999 - 3.3197 0.94 4321 146 0.1761 0.2186 REMARK 3 4 3.3197 - 3.0162 0.96 4353 135 0.1955 0.2714 REMARK 3 5 3.0162 - 2.8001 0.95 4361 130 0.1969 0.2493 REMARK 3 6 2.8001 - 2.6350 0.97 4365 146 0.1911 0.2609 REMARK 3 7 2.6350 - 2.5030 0.97 4395 136 0.2093 0.2579 REMARK 3 8 2.5030 - 2.3941 0.97 4397 137 0.2362 0.3298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5185 REMARK 3 ANGLE : 1.074 7005 REMARK 3 CHIRALITY : 0.064 750 REMARK 3 PLANARITY : 0.004 878 REMARK 3 DIHEDRAL : 13.483 1961 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -1:36) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6661 -42.6172 153.6791 REMARK 3 T TENSOR REMARK 3 T11: 0.4683 T22: 0.1999 REMARK 3 T33: 0.3446 T12: 0.0251 REMARK 3 T13: 0.0498 T23: -0.0828 REMARK 3 L TENSOR REMARK 3 L11: 0.9179 L22: 0.1894 REMARK 3 L33: 0.2528 L12: -0.3455 REMARK 3 L13: 0.0685 L23: -0.1497 REMARK 3 S TENSOR REMARK 3 S11: 0.1355 S12: 0.1257 S13: -0.2896 REMARK 3 S21: -0.4616 S22: 0.0519 S23: -0.2105 REMARK 3 S31: 0.1810 S32: -0.0310 S33: 0.0695 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 37:162) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6087 -23.0021 152.8903 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.1777 REMARK 3 T33: 0.1608 T12: -0.0392 REMARK 3 T13: -0.0086 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.9588 L22: 1.6292 REMARK 3 L33: 0.3005 L12: -0.7188 REMARK 3 L13: -0.4769 L23: 0.0486 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.1143 S13: -0.1773 REMARK 3 S21: -0.1376 S22: -0.0462 S23: 0.0200 REMARK 3 S31: 0.1628 S32: -0.0352 S33: -0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 163:248) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5436 -6.8416 152.4829 REMARK 3 T TENSOR REMARK 3 T11: 0.2108 T22: 0.2518 REMARK 3 T33: 0.2093 T12: -0.0285 REMARK 3 T13: 0.0342 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.6011 L22: 1.5189 REMARK 3 L33: 0.8692 L12: -0.5452 REMARK 3 L13: -0.2090 L23: -0.1550 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: 0.1989 S13: 0.0477 REMARK 3 S21: -0.2780 S22: 0.1275 S23: -0.3376 REMARK 3 S31: 0.0575 S32: 0.1877 S33: 0.0011 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 249:359) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5296 1.5225 153.8217 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1651 REMARK 3 T33: 0.1237 T12: -0.0157 REMARK 3 T13: 0.0067 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.0548 L22: 1.3778 REMARK 3 L33: 1.4241 L12: 0.1693 REMARK 3 L13: -0.1116 L23: 0.1616 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.1959 S13: 0.2164 REMARK 3 S21: -0.1286 S22: 0.0776 S23: -0.0505 REMARK 3 S31: -0.1669 S32: -0.0079 S33: 0.0096 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID -2:96) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6582 -37.6454 178.6846 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.1227 REMARK 3 T33: 0.1716 T12: -0.0534 REMARK 3 T13: -0.0142 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.4683 L22: 0.7946 REMARK 3 L33: 2.0336 L12: -0.2047 REMARK 3 L13: 0.2599 L23: -0.1493 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: -0.0517 S13: -0.1310 REMARK 3 S21: -0.1602 S22: 0.1188 S23: 0.0500 REMARK 3 S31: 0.1467 S32: -0.1232 S33: 0.0505 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 97:103) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7780 -20.7393 169.8831 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.5561 REMARK 3 T33: 0.4138 T12: -0.0389 REMARK 3 T13: 0.0639 T23: 0.1010 REMARK 3 L TENSOR REMARK 3 L11: 0.2833 L22: 0.0004 REMARK 3 L33: 0.0343 L12: 0.0107 REMARK 3 L13: -0.0987 L23: -0.0042 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: -0.0726 S13: 0.0420 REMARK 3 S21: -0.0308 S22: -0.0282 S23: -0.2147 REMARK 3 S31: -0.0254 S32: 0.1085 S33: -0.1798 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 104:145) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8295 -36.1046 173.5696 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.2816 REMARK 3 T33: 0.3168 T12: -0.0194 REMARK 3 T13: 0.0160 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.7651 L22: 0.5280 REMARK 3 L33: 0.5903 L12: -0.2469 REMARK 3 L13: -0.5067 L23: -0.1764 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.0105 S13: -0.0151 REMARK 3 S21: -0.2446 S22: 0.0039 S23: -0.2064 REMARK 3 S31: 0.0200 S32: 0.2258 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 146:264) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4140 -31.8510 190.4335 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.1786 REMARK 3 T33: 0.1953 T12: -0.0118 REMARK 3 T13: 0.0107 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 1.1561 L22: 1.0219 REMARK 3 L33: 2.1306 L12: -0.4189 REMARK 3 L13: 0.2453 L23: 0.3519 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.1823 S13: -0.0918 REMARK 3 S21: 0.0931 S22: 0.0858 S23: 0.1117 REMARK 3 S31: -0.1068 S32: -0.2044 S33: 0.0032 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 90.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.538 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350 AND 0.20 M SODIUM REMARK 280 FORMATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.09200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.41050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.92950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.41050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.09200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.92950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -2 REMARK 465 ARG A 29 REMARK 465 GLY A 30 REMARK 465 THR A 31 REMARK 465 TYR A 32 REMARK 465 LYS A 115 REMARK 465 ALA A 116 REMARK 465 ASN A 117 REMARK 465 LYS A 118 REMARK 465 LYS A 119 REMARK 465 PRO A 120 REMARK 465 PHE A 180 REMARK 465 ASN A 181 REMARK 465 SER A 182 REMARK 465 PRO A 183 REMARK 465 LEU A 184 REMARK 465 LYS A 185 REMARK 465 PRO A 186 REMARK 465 LEU A 187 REMARK 465 ALA A 188 REMARK 465 ASP A 189 REMARK 465 LEU A 190 REMARK 465 ASP A 191 REMARK 465 GLN A 238 REMARK 465 GLU A 239 REMARK 465 ASP A 240 REMARK 465 ILE A 241 REMARK 465 THR A 360 REMARK 465 GLU A 361 REMARK 465 GLU A 362 REMARK 465 GLU A 363 REMARK 465 PRO A 364 REMARK 465 ASP A 365 REMARK 465 ASP A 366 REMARK 465 LYS A 367 REMARK 465 GLY A 368 REMARK 465 ASP A 369 REMARK 465 LYS A 370 REMARK 465 LYS A 371 REMARK 465 ASN A 372 REMARK 465 GLN A 373 REMARK 465 GLN A 374 REMARK 465 GLN A 375 REMARK 465 GLN A 376 REMARK 465 GLN A 377 REMARK 465 GLY A 378 REMARK 465 ASN A 379 REMARK 465 ASN A 380 REMARK 465 HIS A 381 REMARK 465 THR A 382 REMARK 465 ASN A 383 REMARK 465 GLY A 384 REMARK 465 THR A 385 REMARK 465 GLY A 386 REMARK 465 HIS A 387 REMARK 465 PRO A 388 REMARK 465 GLY A 389 REMARK 465 ASN A 390 REMARK 465 GLN A 391 REMARK 465 ASP A 392 REMARK 465 SER A 393 REMARK 465 SER A 394 REMARK 465 HIS A 395 REMARK 465 THR A 396 REMARK 465 GLN A 397 REMARK 465 GLY A 398 REMARK 465 PRO A 399 REMARK 465 PRO A 400 REMARK 465 LEU A 401 REMARK 465 LYS A 402 REMARK 465 LYS A 403 REMARK 465 ASP B -3 REMARK 465 ASN B 265 REMARK 465 SER B 266 REMARK 465 GLU B 267 REMARK 465 GLY B 268 REMARK 465 GLU B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 PRO B 272 REMARK 465 ASN B 273 REMARK 465 GLY B 274 REMARK 465 SER B 275 REMARK 465 GLN B 276 REMARK 465 ASN B 277 REMARK 465 SER B 278 REMARK 465 SER B 279 REMARK 465 TYR B 280 REMARK 465 SER B 281 REMARK 465 GLN B 282 REMARK 465 SER B 283 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A -1 CG OD1 OD2 REMARK 470 LYS A 0 CG CD CE NZ REMARK 470 LYS A 6 NZ REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 ARG A 40 NE CZ NH1 NH2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 47 CD CE NZ REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 MET A 61 CE REMARK 470 LYS A 74 CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 109 CE NZ REMARK 470 ARG A 112 NE CZ NH1 NH2 REMARK 470 SER A 114 OG REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 195 CG1 CG2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 SER A 244 OG REMARK 470 LYS A 265 CE NZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 LYS A 272 NZ REMARK 470 LYS A 281 NZ REMARK 470 ARG A 284 NE CZ NH1 NH2 REMARK 470 ASN A 290 CG OD1 ND2 REMARK 470 LYS A 299 CD CE NZ REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 LYS A 303 CE NZ REMARK 470 GLN A 350 CG CD OE1 NE2 REMARK 470 GLU A 357 CD OE1 OE2 REMARK 470 LEU A 359 CG CD1 CD2 REMARK 470 ASP B -2 CG OD1 OD2 REMARK 470 LYS B 23 CD CE NZ REMARK 470 LYS B 30 CD CE NZ REMARK 470 LYS B 56 CD CE NZ REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 LYS B 117 CD CE NZ REMARK 470 LYS B 126 CD CE NZ REMARK 470 ARG B 131 CZ NH1 NH2 REMARK 470 LYS B 211 CD CE NZ REMARK 470 SER B 221 OG REMARK 470 GLU B 225 CD OE1 OE2 REMARK 470 LYS B 236 NZ REMARK 470 LYS B 259 CG CD CE NZ REMARK 470 LYS B 261 CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE B 100 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 0 -2.20 70.69 REMARK 500 TYR A 22 -1.26 -155.81 REMARK 500 ARG A 150 -2.99 82.18 REMARK 500 ASP A 151 45.38 -152.96 REMARK 500 SER A 230 3.11 81.36 REMARK 500 TRP A 267 81.21 -155.05 REMARK 500 PHE B 100 96.61 53.94 REMARK 500 VAL B 102 93.94 -65.63 REMARK 500 ASP B 223 98.72 -59.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 66X A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CEI RELATED DB: PDB DBREF 5HVY A 1 403 UNP P49336 CDK8_HUMAN 1 403 DBREF 5HVY B 1 283 UNP P24863 CCNC_HUMAN 1 283 SEQADV 5HVY ASP A -2 UNP P49336 EXPRESSION TAG SEQADV 5HVY ASP A -1 UNP P49336 EXPRESSION TAG SEQADV 5HVY LYS A 0 UNP P49336 EXPRESSION TAG SEQADV 5HVY ASP B -3 UNP P24863 EXPRESSION TAG SEQADV 5HVY ASP B -2 UNP P24863 EXPRESSION TAG SEQADV 5HVY LYS B -1 UNP P24863 EXPRESSION TAG SEQADV 5HVY ALA B 0 UNP P24863 EXPRESSION TAG SEQRES 1 A 406 ASP ASP LYS MET ASP TYR ASP PHE LYS VAL LYS LEU SER SEQRES 2 A 406 SER GLU ARG GLU ARG VAL GLU ASP LEU PHE GLU TYR GLU SEQRES 3 A 406 GLY CYS LYS VAL GLY ARG GLY THR TYR GLY HIS VAL TYR SEQRES 4 A 406 LYS ALA LYS ARG LYS ASP GLY LYS ASP ASP LYS ASP TYR SEQRES 5 A 406 ALA LEU LYS GLN ILE GLU GLY THR GLY ILE SER MET SER SEQRES 6 A 406 ALA CYS ARG GLU ILE ALA LEU LEU ARG GLU LEU LYS HIS SEQRES 7 A 406 PRO ASN VAL ILE SER LEU GLN LYS VAL PHE LEU SER HIS SEQRES 8 A 406 ALA ASP ARG LYS VAL TRP LEU LEU PHE ASP TYR ALA GLU SEQRES 9 A 406 HIS ASP LEU TRP HIS ILE ILE LYS PHE HIS ARG ALA SER SEQRES 10 A 406 LYS ALA ASN LYS LYS PRO VAL GLN LEU PRO ARG GLY MET SEQRES 11 A 406 VAL LYS SER LEU LEU TYR GLN ILE LEU ASP GLY ILE HIS SEQRES 12 A 406 TYR LEU HIS ALA ASN TRP VAL LEU HIS ARG ASP LEU LYS SEQRES 13 A 406 PRO ALA ASN ILE LEU VAL MET GLY GLU GLY PRO GLU ARG SEQRES 14 A 406 GLY ARG VAL LYS ILE ALA ASP MET GLY PHE ALA ARG LEU SEQRES 15 A 406 PHE ASN SER PRO LEU LYS PRO LEU ALA ASP LEU ASP PRO SEQRES 16 A 406 VAL VAL VAL THR PHE TRP TYR ARG ALA PRO GLU LEU LEU SEQRES 17 A 406 LEU GLY ALA ARG HIS TYR THR LYS ALA ILE ASP ILE TRP SEQRES 18 A 406 ALA ILE GLY CYS ILE PHE ALA GLU LEU LEU THR SER GLU SEQRES 19 A 406 PRO ILE PHE HIS CYS ARG GLN GLU ASP ILE LYS THR SER SEQRES 20 A 406 ASN PRO TYR HIS HIS ASP GLN LEU ASP ARG ILE PHE ASN SEQRES 21 A 406 VAL MET GLY PHE PRO ALA ASP LYS ASP TRP GLU ASP ILE SEQRES 22 A 406 LYS LYS MET PRO GLU HIS SER THR LEU MET LYS ASP PHE SEQRES 23 A 406 ARG ARG ASN THR TYR THR ASN CYS SER LEU ILE LYS TYR SEQRES 24 A 406 MET GLU LYS HIS LYS VAL LYS PRO ASP SER LYS ALA PHE SEQRES 25 A 406 HIS LEU LEU GLN LYS LEU LEU THR MET ASP PRO ILE LYS SEQRES 26 A 406 ARG ILE THR SER GLU GLN ALA MET GLN ASP PRO TYR PHE SEQRES 27 A 406 LEU GLU ASP PRO LEU PRO THR SER ASP VAL PHE ALA GLY SEQRES 28 A 406 CYS GLN ILE PRO TYR PRO LYS ARG GLU PHE LEU THR GLU SEQRES 29 A 406 GLU GLU PRO ASP ASP LYS GLY ASP LYS LYS ASN GLN GLN SEQRES 30 A 406 GLN GLN GLN GLY ASN ASN HIS THR ASN GLY THR GLY HIS SEQRES 31 A 406 PRO GLY ASN GLN ASP SER SER HIS THR GLN GLY PRO PRO SEQRES 32 A 406 LEU LYS LYS SEQRES 1 B 287 ASP ASP LYS ALA MET ALA GLY ASN PHE TRP GLN SER SER SEQRES 2 B 287 HIS TYR LEU GLN TRP ILE LEU ASP LYS GLN ASP LEU LEU SEQRES 3 B 287 LYS GLU ARG GLN LYS ASP LEU LYS PHE LEU SER GLU GLU SEQRES 4 B 287 GLU TYR TRP LYS LEU GLN ILE PHE PHE THR ASN VAL ILE SEQRES 5 B 287 GLN ALA LEU GLY GLU HIS LEU LYS LEU ARG GLN GLN VAL SEQRES 6 B 287 ILE ALA THR ALA THR VAL TYR PHE LYS ARG PHE TYR ALA SEQRES 7 B 287 ARG TYR SER LEU LYS SER ILE ASP PRO VAL LEU MET ALA SEQRES 8 B 287 PRO THR CYS VAL PHE LEU ALA SER LYS VAL GLU GLU PHE SEQRES 9 B 287 GLY VAL VAL SER ASN THR ARG LEU ILE ALA ALA ALA THR SEQRES 10 B 287 SER VAL LEU LYS THR ARG PHE SER TYR ALA PHE PRO LYS SEQRES 11 B 287 GLU PHE PRO TYR ARG MET ASN HIS ILE LEU GLU CYS GLU SEQRES 12 B 287 PHE TYR LEU LEU GLU LEU MET ASP CYS CYS LEU ILE VAL SEQRES 13 B 287 TYR HIS PRO TYR ARG PRO LEU LEU GLN TYR VAL GLN ASP SEQRES 14 B 287 MET GLY GLN GLU ASP MET LEU LEU PRO LEU ALA TRP ARG SEQRES 15 B 287 ILE VAL ASN ASP THR TYR ARG THR ASP LEU CYS LEU LEU SEQRES 16 B 287 TYR PRO PRO PHE MET ILE ALA LEU ALA CYS LEU HIS VAL SEQRES 17 B 287 ALA CYS VAL VAL GLN GLN LYS ASP ALA ARG GLN TRP PHE SEQRES 18 B 287 ALA GLU LEU SER VAL ASP MET GLU LYS ILE LEU GLU ILE SEQRES 19 B 287 ILE ARG VAL ILE LEU LYS LEU TYR GLU GLN TRP LYS ASN SEQRES 20 B 287 PHE ASP GLU ARG LYS GLU MET ALA THR ILE LEU SER LYS SEQRES 21 B 287 MET PRO LYS PRO LYS PRO PRO PRO ASN SER GLU GLY GLU SEQRES 22 B 287 GLN GLY PRO ASN GLY SER GLN ASN SER SER TYR SER GLN SEQRES 23 B 287 SER HET 66X A 501 59 HET FMT A 502 4 HET CL B 301 1 HET CL B 302 1 HETNAM 66X N-{(3S)-1-[2-(METHYLAMINO)PYRIMIDIN-4-YL]PYRROLIDIN-3- HETNAM 2 66X YL}-N'-{4-[(MORPHOLIN-4-YL)METHYL]-3- HETNAM 3 66X (TRIFLUOROMETHYL)PHENYL}UREA HETNAM FMT FORMIC ACID HETNAM CL CHLORIDE ION FORMUL 3 66X C22 H28 F3 N7 O2 FORMUL 4 FMT C H2 O2 FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *157(H2 O) HELIX 1 AA1 ASP A 2 ARG A 13 1 12 HELIX 2 AA2 ARG A 15 LEU A 19 1 5 HELIX 3 AA3 SER A 60 ARG A 71 1 12 HELIX 4 AA4 LEU A 104 ALA A 113 1 10 HELIX 5 AA5 PRO A 124 ASN A 145 1 22 HELIX 6 AA6 LYS A 153 ALA A 155 5 3 HELIX 7 AA7 ALA A 201 LEU A 206 1 6 HELIX 8 AA8 THR A 212 SER A 230 1 19 HELIX 9 AA9 HIS A 248 GLY A 260 1 13 HELIX 10 AB1 ALA A 263 MET A 273 5 11 HELIX 11 AB2 GLU A 275 PHE A 283 1 9 HELIX 12 AB3 ARG A 284 THR A 289 5 6 HELIX 13 AB4 SER A 292 HIS A 300 1 9 HELIX 14 AB5 SER A 306 LEU A 316 1 11 HELIX 15 AB6 ASP A 319 ARG A 323 5 5 HELIX 16 AB7 THR A 325 GLN A 331 1 7 HELIX 17 AB8 ASP A 332 GLU A 337 5 6 HELIX 18 AB9 ASN B 4 GLN B 7 5 4 HELIX 19 AC1 SER B 8 TRP B 14 1 7 HELIX 20 AC2 ASP B 17 LYS B 30 1 14 HELIX 21 AC3 SER B 33 LEU B 55 1 23 HELIX 22 AC4 ARG B 58 TYR B 76 1 19 HELIX 23 AC5 ASP B 82 LYS B 96 1 15 HELIX 24 AC6 SER B 104 PHE B 120 1 17 HELIX 25 AC7 ARG B 131 MET B 146 1 16 HELIX 26 AC8 PRO B 155 GLY B 167 1 13 HELIX 27 AC9 GLN B 168 TYR B 184 1 17 HELIX 28 AD1 ASP B 187 TYR B 192 1 6 HELIX 29 AD2 PRO B 193 GLN B 209 1 17 HELIX 30 AD3 ALA B 213 GLU B 219 1 7 HELIX 31 AD4 ASP B 223 PHE B 244 1 22 HELIX 32 AD5 ASP B 245 MET B 257 1 13 SHEET 1 AA1 3 PHE A 20 GLU A 21 0 SHEET 2 AA1 3 HIS A 34 ARG A 40 -1 O LYS A 39 N GLU A 21 SHEET 3 AA1 3 LYS A 26 GLY A 28 -1 N VAL A 27 O VAL A 35 SHEET 1 AA2 5 PHE A 20 GLU A 21 0 SHEET 2 AA2 5 HIS A 34 ARG A 40 -1 O LYS A 39 N GLU A 21 SHEET 3 AA2 5 TYR A 49 GLN A 53 -1 O LEU A 51 N TYR A 36 SHEET 4 AA2 5 LYS A 92 ASP A 98 -1 O PHE A 97 N ALA A 50 SHEET 5 AA2 5 LYS A 83 SER A 87 -1 N PHE A 85 O TRP A 94 SHEET 1 AA3 3 HIS A 102 ASP A 103 0 SHEET 2 AA3 3 ILE A 157 VAL A 159 -1 O VAL A 159 N HIS A 102 SHEET 3 AA3 3 VAL A 169 ILE A 171 -1 O LYS A 170 N LEU A 158 CISPEP 1 ASP A 338 PRO A 339 0 -3.49 SITE 1 AC1 15 ALA A 50 LEU A 69 ILE A 79 PHE A 97 SITE 2 AC1 15 ASP A 98 TYR A 99 ALA A 100 LEU A 148 SITE 3 AC1 15 HIS A 149 LEU A 158 ILE A 171 ALA A 172 SITE 4 AC1 15 ASP A 173 ARG A 356 HOH A 665 SITE 1 AC2 4 PHE A 20 GLU A 21 TYR A 22 GLU A 23 SITE 1 AC3 2 GLN B 41 HOH B 463 SITE 1 AC4 1 ALA B 0 CRYST1 72.184 71.859 180.821 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013853 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005530 0.00000