HEADER HYDROLASE 29-JAN-16 5HWE TITLE HIGH RESOLUTION STRUCTURE OF BARBITURASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BARBITURASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS ERYTHROPOLIS; SOURCE 3 ORGANISM_TAXID: 1833; SOURCE 4 GENE: BAR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET14B VARIANT KEYWDS TOBLERONE FOLD, PYRIMIDINE CATABOLISM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.S.PEAT,C.SCOTT REVDAT 4 27-SEP-23 5HWE 1 REMARK REVDAT 3 26-APR-17 5HWE 1 JRNL REVDAT 2 15-MAR-17 5HWE 1 JRNL REVDAT 1 01-FEB-17 5HWE 0 JRNL AUTH T.S.PEAT,S.BALOTRA,M.WILDING,C.J.HARTLEY,J.NEWMAN,C.SCOTT JRNL TITL HIGH-RESOLUTION X-RAY STRUCTURES OF TWO FUNCTIONALLY JRNL TITL 2 DISTINCT MEMBERS OF THE CYCLIC AMIDE HYDROLASE FAMILY OF JRNL TITL 3 TOBLERONE FOLD ENZYMES. JRNL REF APPL. ENVIRON. MICROBIOL. V. 83 2017 JRNL REFN ESSN 1098-5336 JRNL PMID 28235873 JRNL DOI 10.1128/AEM.03365-16 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1762 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.170 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2883 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2759 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3933 ; 1.912 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6361 ; 1.106 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 5.647 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;34.552 ;24.407 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 470 ;13.224 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.482 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 460 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3351 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 604 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1528 ; 2.359 ; 2.246 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1527 ; 2.355 ; 2.243 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1924 ; 3.154 ; 3.769 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1925 ; 3.155 ; 3.773 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1353 ; 3.686 ; 2.826 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1351 ; 3.688 ; 2.827 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2007 ; 5.275 ; 4.523 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 12941 ; 6.050 ; 9.679 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 12937 ; 6.051 ; 9.678 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5HWE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36498 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.707 REMARK 200 RESOLUTION RANGE LOW (A) : 41.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BVQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 16 MG/,ML IN 50 MM ADA PH REMARK 280 6.5, 50 MM NACL; RESERVOIR OF 2.45 M AMMONIUM SULFATE, 10% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.17050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.28150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.15000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.17050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.28150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.15000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.17050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.28150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.15000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.17050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.28150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 742 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 744 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 703 O HOH A 737 1.96 REMARK 500 NE2 GLN A 304 O HOH A 501 2.11 REMARK 500 O HOH A 668 O HOH A 774 2.15 REMARK 500 O HOH A 738 O HOH A 794 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 756 O HOH A 756 4555 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 MET A 145 CG - SD - CE ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG A 274 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 217 -2.44 69.76 REMARK 500 GLU A 234 -8.65 -53.18 REMARK 500 SER A 258 -158.02 -152.56 REMARK 500 SER A 349 80.99 85.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 301 OE2 REMARK 620 2 ALA A 350 O 94.3 REMARK 620 3 GLN A 353 O 165.9 72.1 REMARK 620 4 PRO A 355 O 86.0 158.3 107.9 REMARK 620 5 GLY A 358 O 99.2 124.6 86.0 76.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MHA A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HXU RELATED DB: PDB REMARK 900 RELATED ID: 5HXZ RELATED DB: PDB REMARK 900 RELATED ID: 5HY0 RELATED DB: PDB REMARK 900 RELATED ID: 5HY1 RELATED DB: PDB REMARK 900 RELATED ID: 5HY2 RELATED DB: PDB REMARK 900 RELATED ID: 5HY4 RELATED DB: PDB DBREF 5HWE A 1 369 UNP Q8RSQ2 BAR_RHOER 1 369 SEQADV 5HWE MET A -19 UNP Q8RSQ2 INITIATING METHIONINE SEQADV 5HWE GLY A -18 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE SER A -17 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE SER A -16 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE HIS A -15 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE HIS A -14 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE HIS A -13 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE HIS A -12 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE HIS A -11 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE HIS A -10 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE SER A -9 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE SER A -8 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE GLY A -7 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE LEU A -6 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE VAL A -5 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE PRO A -4 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE ARG A -3 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE GLY A -2 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE SER A -1 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE HIS A 0 UNP Q8RSQ2 EXPRESSION TAG SEQADV 5HWE SER A 287 UNP Q8RSQ2 ASN 287 CONFLICT SEQRES 1 A 389 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 389 LEU VAL PRO ARG GLY SER HIS MET PRO GLU ALA ILE GLU SEQRES 3 A 389 VAL ARG LYS VAL PRO LEU HIS SER VAL SER ASP ALA SER SEQRES 4 A 389 GLU LEU ALA LYS LEU ILE ASP ASP GLY VAL LEU GLU ALA SEQRES 5 A 389 ASP ARG VAL ILE ALA VAL ILE GLY LYS THR GLU GLY ASN SEQRES 6 A 389 GLY GLY VAL ASN ASP TYR THR ARG ILE ILE ALA ASP ARG SEQRES 7 A 389 ALA PHE ARG GLU VAL LEU SER ALA LYS GLY ASN ARG SER SEQRES 8 A 389 PRO GLU GLU VAL ALA GLU VAL PRO ILE VAL TRP SER GLY SEQRES 9 A 389 GLY THR ASP GLY VAL ILE SER PRO HIS ALA THR ILE PHE SEQRES 10 A 389 ALA THR VAL PRO ALA ASP LYS VAL THR LYS THR ASP GLU SEQRES 11 A 389 PRO ARG LEU THR VAL GLY VAL ALA MET SER GLU GLN LEU SEQRES 12 A 389 LEU PRO GLU ASP ILE GLY ARG THR ALA MET ILE THR LYS SEQRES 13 A 389 VAL ALA ALA ALA VAL LYS ASP ALA MET ALA ASP ALA GLY SEQRES 14 A 389 ILE THR ASP PRO ALA ASP VAL HIS TYR VAL GLN THR LYS SEQRES 15 A 389 THR PRO LEU LEU THR ILE HIS THR ILE ARG ASP ALA LYS SEQRES 16 A 389 SER ARG GLY LYS THR VAL TRP THR GLU GLN THR HIS GLU SEQRES 17 A 389 SER MET ASP LEU SER ASN GLY GLY THR ALA LEU GLY ILE SEQRES 18 A 389 ALA VAL ALA LEU GLY GLU ILE ASP MET PRO THR ASP GLU SEQRES 19 A 389 ASP VAL MET HIS SER ARG GLU LEU PHE SER SER VAL ALA SEQRES 20 A 389 SER CYS SER SER GLY VAL GLU LEU ASP ARG ALA GLN ILE SEQRES 21 A 389 VAL VAL VAL GLY ASN ALA ARG GLY VAL GLY GLY ARG TYR SEQRES 22 A 389 ARG ILE GLY HIS SER VAL MET LYS ASP PRO LEU ASP GLN SEQRES 23 A 389 ASP GLY ILE TRP ALA ALA ILE ARG ASP ALA GLY LEU GLU SEQRES 24 A 389 LEU PRO GLU ARG PRO HIS SER SER ASP LEU ASP GLY GLN SEQRES 25 A 389 LEU VAL ASN VAL PHE LEU LYS CYS GLU ALA SER GLN ASP SEQRES 26 A 389 GLY THR VAL ARG GLY ARG ARG ASN ALA MET LEU ASP ASP SEQRES 27 A 389 SER ASP VAL HIS TRP HIS ARG GLN ILE LYS SER CYS VAL SEQRES 28 A 389 GLY GLY VAL THR ALA ALA VAL THR GLY ASP PRO ALA VAL SEQRES 29 A 389 PHE VAL SER VAL SER ALA ALA HIS GLN GLY PRO GLU GLY SEQRES 30 A 389 GLY GLY PRO VAL ALA ALA ILE VAL ASP LEU GLY GLN HET MG A 401 1 HET SO4 A 402 5 HET MHA A 403 13 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM MHA (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID HETSYN MHA N-(2-ACETAMIDO)IMINODIACETIC ACID FORMUL 2 MG MG 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 MHA C6 H10 N2 O5 FORMUL 5 HOH *295(H2 O) HELIX 1 AA1 ALA A 18 ASP A 27 1 10 HELIX 2 AA2 GLU A 31 ASP A 33 5 3 HELIX 3 AA3 TYR A 51 LYS A 67 1 17 HELIX 4 AA4 SER A 71 GLU A 77 1 7 HELIX 5 AA5 PRO A 101 VAL A 105 5 5 HELIX 6 AA6 LEU A 124 ILE A 128 5 5 HELIX 7 AA7 ARG A 130 ALA A 148 1 19 HELIX 8 AA8 ASP A 152 ALA A 154 5 3 HELIX 9 AA9 THR A 167 ARG A 177 1 11 HELIX 10 AB1 GLN A 185 LEU A 205 1 21 HELIX 11 AB2 THR A 212 VAL A 216 5 5 HELIX 12 AB3 ASP A 265 ALA A 276 1 12 HELIX 13 AB4 HIS A 285 LEU A 289 5 5 HELIX 14 AB5 ALA A 314 ASP A 318 5 5 HELIX 15 AB6 HIS A 322 GLY A 340 1 19 SHEET 1 AA1 4 ILE A 5 PRO A 11 0 SHEET 2 AA1 4 HIS A 93 THR A 99 -1 O ILE A 96 N ARG A 8 SHEET 3 AA1 4 VAL A 35 THR A 42 -1 N ILE A 39 O THR A 95 SHEET 4 AA1 4 ILE A 80 GLY A 84 1 O VAL A 81 N GLY A 40 SHEET 1 AA2 4 ARG A 112 MET A 119 0 SHEET 2 AA2 4 GLN A 239 ALA A 246 -1 O VAL A 242 N GLY A 116 SHEET 3 AA2 4 VAL A 156 THR A 163 -1 N TYR A 158 O VAL A 243 SHEET 4 AA2 4 ALA A 227 SER A 231 1 O SER A 228 N VAL A 159 SHEET 1 AA3 4 TYR A 253 MET A 260 0 SHEET 2 AA3 4 GLY A 359 ASP A 366 -1 O GLY A 359 N MET A 260 SHEET 3 AA3 4 LEU A 293 CYS A 300 -1 N PHE A 297 O ALA A 362 SHEET 4 AA3 4 PHE A 345 VAL A 348 1 O SER A 347 N LEU A 298 SHEET 1 AA4 2 THR A 307 VAL A 308 0 SHEET 2 AA4 2 ARG A 311 ARG A 312 -1 O ARG A 311 N VAL A 308 LINK OE2 GLU A 301 MG MG A 401 1555 1555 2.78 LINK O ALA A 350 MG MG A 401 1555 1555 2.99 LINK O GLN A 353 MG MG A 401 1555 1555 2.73 LINK O PRO A 355 MG MG A 401 1555 1555 2.88 LINK O GLY A 358 MG MG A 401 1555 1555 2.73 SITE 1 AC1 6 GLU A 301 ALA A 350 GLN A 353 GLY A 354 SITE 2 AC1 6 PRO A 355 GLY A 358 SITE 1 AC2 3 ARG A 254 HOH A 513 HOH A 592 SITE 1 AC3 13 GLY A 46 GLY A 47 ASP A 50 ARG A 53 SITE 2 AC3 13 SER A 83 GLY A 84 ASN A 194 SER A 230 SITE 3 AC3 13 SER A 231 LYS A 328 SER A 347 VAL A 348 SITE 4 AC3 13 HOH A 591 CRYST1 70.341 82.563 114.300 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014216 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008749 0.00000