HEADER TRANSFERASE 02-FEB-16 5HZD TITLE RNA EDITING TUTASE 1 FROM TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3' TERMINAL URIDYLYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA EDITING TUTASE1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: 3' TUTASE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA EDITING TUTASE1, TRANSFERASE, TRYPANOSOMA BRUCEI EXPDTA X-RAY DIFFRACTION AUTHOR S.THORE,L.T.RAJAPPA REVDAT 3 10-JAN-24 5HZD 1 REMARK REVDAT 2 28-DEC-16 5HZD 1 JRNL REVDAT 1 26-OCT-16 5HZD 0 JRNL AUTH L.RAJAPPA-TITU,T.SUEMATSU,P.MUNOZ-TELLO,M.LONG,O.DEMIR, JRNL AUTH 2 K.J.CHENG,J.R.STAGNO,H.LUECKE,R.E.AMARO,I.APHASIZHEVA, JRNL AUTH 3 R.APHASIZHEV,S.THORE JRNL TITL RNA EDITING TUTASE 1: STRUCTURAL FOUNDATION OF SUBSTRATE JRNL TITL 2 RECOGNITION, COMPLEX INTERACTIONS AND DRUG TARGETING. JRNL REF NUCLEIC ACIDS RES. V. 44 10862 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27744351 JRNL DOI 10.1093/NAR/GKW917 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 67307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6485 - 4.6056 1.00 2891 152 0.1723 0.1836 REMARK 3 2 4.6056 - 3.6594 1.00 2722 143 0.1402 0.1860 REMARK 3 3 3.6594 - 3.1980 1.00 2732 144 0.1512 0.1603 REMARK 3 4 3.1980 - 2.9061 1.00 2677 141 0.1636 0.2034 REMARK 3 5 2.9061 - 2.6981 1.00 2710 142 0.1703 0.2020 REMARK 3 6 2.6981 - 2.5392 1.00 2656 140 0.1674 0.2257 REMARK 3 7 2.5392 - 2.4121 1.00 2685 141 0.1622 0.1998 REMARK 3 8 2.4121 - 2.3072 1.00 2651 140 0.1642 0.2195 REMARK 3 9 2.3072 - 2.2184 1.00 2653 140 0.1622 0.2025 REMARK 3 10 2.2184 - 2.1419 1.00 2658 139 0.1628 0.2081 REMARK 3 11 2.1419 - 2.0750 1.00 2658 140 0.1647 0.1815 REMARK 3 12 2.0750 - 2.0157 1.00 2641 139 0.1656 0.1974 REMARK 3 13 2.0157 - 1.9627 1.00 2625 139 0.1734 0.2152 REMARK 3 14 1.9627 - 1.9148 1.00 2671 140 0.1712 0.1982 REMARK 3 15 1.9148 - 1.8713 1.00 2618 138 0.1753 0.2342 REMARK 3 16 1.8713 - 1.8315 1.00 2667 140 0.1804 0.2248 REMARK 3 17 1.8315 - 1.7948 1.00 2633 139 0.1824 0.2296 REMARK 3 18 1.7948 - 1.7610 1.00 2606 137 0.1863 0.2588 REMARK 3 19 1.7610 - 1.7295 1.00 2644 139 0.1934 0.2336 REMARK 3 20 1.7295 - 1.7002 1.00 2635 139 0.1959 0.2232 REMARK 3 21 1.7002 - 1.6728 1.00 2615 137 0.1933 0.2154 REMARK 3 22 1.6728 - 1.6471 1.00 2653 140 0.1982 0.2153 REMARK 3 23 1.6471 - 1.6229 1.00 2588 136 0.2205 0.2366 REMARK 3 24 1.6229 - 1.6000 1.00 2653 140 0.2384 0.2787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4030 REMARK 3 ANGLE : 1.313 5505 REMARK 3 CHIRALITY : 0.096 608 REMARK 3 PLANARITY : 0.006 708 REMARK 3 DIHEDRAL : 12.196 1503 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 93.6014 138.0758 51.2935 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.1180 REMARK 3 T33: 0.1265 T12: -0.0158 REMARK 3 T13: -0.0297 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.6777 L22: 0.4805 REMARK 3 L33: 0.5759 L12: -0.1283 REMARK 3 L13: -0.3253 L23: 0.1708 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: -0.0580 S13: -0.0186 REMARK 3 S21: -0.0612 S22: -0.0051 S23: -0.0187 REMARK 3 S31: -0.0104 S32: 0.0034 S33: 0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81270 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.64400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IKF REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.5, 19% PEG 3350, 0.2M REMARK 280 LITHIUM SULFATE MONOHYDRATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 64.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1230 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 188 REMARK 465 GLY A 189 REMARK 465 ILE A 370 REMARK 465 LEU A 371 REMARK 465 THR A 372 REMARK 465 VAL A 373 REMARK 465 ALA A 374 REMARK 465 ARG A 375 REMARK 465 ARG A 376 REMARK 465 ASP A 377 REMARK 465 ALA A 378 REMARK 465 GLU A 379 REMARK 465 VAL A 625 REMARK 465 PRO A 626 REMARK 465 VAL A 627 REMARK 465 ALA A 628 REMARK 465 SER A 629 REMARK 465 THR A 630 REMARK 465 SER A 631 REMARK 465 VAL A 632 REMARK 465 SER A 633 REMARK 465 SER A 634 REMARK 465 GLY A 635 REMARK 465 GLY A 636 REMARK 465 GLY A 637 REMARK 465 GLY A 638 REMARK 465 SER A 639 REMARK 465 ASN A 640 REMARK 465 VAL A 641 REMARK 465 LYS A 642 REMARK 465 GLY A 689 REMARK 465 GLU A 690 REMARK 465 THR A 691 REMARK 465 ARG A 692 REMARK 465 SER A 693 REMARK 465 ALA A 699 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 531 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 488 O HOH A 801 2.02 REMARK 500 NH2 ARG A 263 O HOH A 802 2.08 REMARK 500 NH2 ARG A 263 O HOH A 803 2.10 REMARK 500 O HOH A 802 O HOH A 1282 2.10 REMARK 500 O HOH A 1255 O HOH A 1331 2.10 REMARK 500 OE2 GLU A 577 O HOH A 804 2.10 REMARK 500 O HOH A 810 O HOH A 1002 2.10 REMARK 500 O HOH A 857 O HOH A 860 2.11 REMARK 500 O HOH A 1127 O HOH A 1254 2.15 REMARK 500 O HOH A 1056 O HOH A 1246 2.15 REMARK 500 O HOH A 821 O HOH A 1191 2.16 REMARK 500 OE1 GLN A 417 O HOH A 805 2.17 REMARK 500 O HOH A 1327 O HOH A 1341 2.18 REMARK 500 O HOH A 1054 O HOH A 1255 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 956 O HOH A 1169 3656 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 354 78.14 -117.72 REMARK 500 ASN A 515 67.34 -170.89 REMARK 500 ASP A 557 48.19 -93.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1386 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1387 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1388 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1389 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1390 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A1391 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A1392 DISTANCE = 6.77 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 198 SG 120.5 REMARK 620 3 HIS A 212 NE2 101.7 111.2 REMARK 620 4 HIS A 217 NE2 103.7 112.0 106.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 704 DBREF 5HZD A 189 699 UNP Q8WQX5 Q8WQX5_9TRYP 189 699 SEQADV 5HZD MET A 188 UNP Q8WQX5 INITIATING METHIONINE SEQRES 1 A 512 MET GLY VAL ARG LEU TYR SER CYS ASP ALA CYS PRO HIS SEQRES 2 A 512 ALA VAL PHE THR THR HIS ALA ALA LEU LEU ALA HIS ALA SEQRES 3 A 512 GLU GLU HIS HIS ALA ASP LEU LEU PRO ASP HIS ALA ARG SEQRES 4 A 512 LEU ARG ARG ILE ALA GLN LYS LEU ASN PRO VAL TRP ASN SEQRES 5 A 512 ARG ALA LEU ASN ALA ARG ARG ASN THR ILE THR SER TRP SEQRES 6 A 512 GLY LYS LYS ILE PHE HIS VAL ALA ALA GLN ARG ASP ALA SEQRES 7 A 512 GLY GLU SER LYS MET GLN GLU ALA HIS ARG ALA ARG ALA SEQRES 8 A 512 GLN LEU GLU CYS VAL VAL ARG ARG TRP HIS ASP LYS ALA SEQRES 9 A 512 ARG VAL PHE ILE PHE GLY SER SER VAL ALA MET GLY VAL SEQRES 10 A 512 TRP ASP GLY THR ALA ASP ILE ASP PHE ALA VAL VAL ASP SEQRES 11 A 512 VAL ASP ALA MET GLU ARG GLY SER TRP PRO PRO LEU GLU SEQRES 12 A 512 LYS ASN ALA VAL ARG SER ILE THR GLU LEU LEU ARG ARG SEQRES 13 A 512 VAL GLY PHE SER PHE VAL ASN LEU GLU PRO ILE SER HIS SEQRES 14 A 512 ALA ARG VAL PRO ILE ILE LYS HIS HIS ALA SER SER PRO SEQRES 15 A 512 ILE LEU THR VAL ALA ARG ARG ASP ALA GLU ASP VAL VAL SEQRES 16 A 512 ALA ARG SER ILE ARG PHE ILE LEU ASN GLY PRO ALA THR SEQRES 17 A 512 ARG GLU ASP ARG LEU LEU LEU GLU GLY SER VAL ARG ASP SEQRES 18 A 512 ALA VAL GLY PRO THR GLY VAL GLN GLN VAL TRP TRP ASN SEQRES 19 A 512 ARG THR SER ASP MET MET SER ALA THR LEU GLU SER THR SEQRES 20 A 512 THR ALA ALA VAL ARG ALA ALA MET CYS SER PRO ALA LEU SEQRES 21 A 512 ALA SER ALA SER LEU ARG THR LYS VAL GLN PRO ALA HIS SEQRES 22 A 512 ASP GLU CYS ARG PRO GLU LEU TYR ASN ILE ASP PHE ASP SEQRES 23 A 512 LEU SER PHE ARG ALA PHE GLY ILE ARG ASN SER THR LEU SEQRES 24 A 512 LEU ARG LYS TYR LEU LEU SER HIS PRO CYS ALA ARG PRO SEQRES 25 A 512 GLY ALA ILE VAL LEU LYS ASP TRP SER LYS THR SER GLY SEQRES 26 A 512 VAL ASN ASN SER VAL ASN GLY TYR PHE THR SER TYR ALA SEQRES 27 A 512 ILE ASN ILE MET TRP ILE TYR TYR LEU VAL GLN LYS GLY SEQRES 28 A 512 TYR VAL PRO TYR VAL ASP PRO LEU GLU ILE PRO GLU SER SEQRES 29 A 512 LEU VAL ASN TYR THR ASP PHE ASP PRO ARG TYR THR PRO SEQRES 30 A 512 MET ILE ASP PRO GLU ILE THR ASN THR GLU ARG GLU GLU SEQRES 31 A 512 LEU TYR LYS ALA ALA GLY ASP MET LEU VAL GLY PHE PHE SEQRES 32 A 512 TYR PHE TYR SER PHE GLU PHE ASP TRP GLY HIS ASN VAL SEQRES 33 A 512 ILE SER LEU ASN ARG PRO GLY ILE THR THR LYS ARG MET SEQRES 34 A 512 LEU GLY TRP HIS VAL GLU ASP VAL VAL PRO VAL ALA SER SEQRES 35 A 512 THR SER VAL SER SER GLY GLY GLY GLY SER ASN VAL LYS SEQRES 36 A 512 ARG HIS PRO THR ARG TYR GLU LEU CYS ILE GLU ASP PRO SEQRES 37 A 512 TYR GLU GLU ASN LEU ASN LEU GLY ARG HIS ILE GLY VAL SEQRES 38 A 512 THR LYS SER LEU ARG VAL ARG THR GLU LEU TYR ARG GLY SEQRES 39 A 512 LEU LEU SER LEU LEU LYS GLU GLY GLU THR ARG SER CYS SEQRES 40 A 512 VAL PHE ALA ALA ALA HET ZN A 701 1 HET SO4 A 702 5 HET CL A 703 1 HET SO4 A 704 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 CL CL 1- FORMUL 6 HOH *592(H2 O) HELIX 1 AA1 THR A 205 ALA A 218 1 14 HELIX 2 AA2 ASP A 219 LEU A 221 5 3 HELIX 3 AA3 ASP A 223 ASN A 235 1 13 HELIX 4 AA4 VAL A 237 ARG A 245 1 9 HELIX 5 AA5 ARG A 245 ASP A 264 1 20 HELIX 6 AA6 GLY A 266 HIS A 288 1 23 HELIX 7 AA7 GLY A 297 MET A 302 1 6 HELIX 8 AA8 ASP A 317 ARG A 323 1 7 HELIX 9 AA9 LEU A 329 VAL A 344 1 16 HELIX 10 AB1 VAL A 381 ALA A 383 5 3 HELIX 11 AB2 THR A 395 GLY A 411 1 17 HELIX 12 AB3 SER A 433 MET A 442 1 10 HELIX 13 AB4 PRO A 465 ILE A 470 5 6 HELIX 14 AB5 ALA A 478 LEU A 492 1 15 HELIX 15 AB6 CYS A 496 SER A 511 1 16 HELIX 16 AB7 ASN A 515 GLY A 519 5 5 HELIX 17 AB8 THR A 522 LYS A 537 1 16 HELIX 18 AB9 ASP A 544 ILE A 548 5 5 HELIX 19 AC1 THR A 571 GLU A 596 1 26 HELIX 20 AC2 ARG A 615 GLY A 618 5 4 HELIX 21 AC3 GLY A 667 LEU A 685 1 19 SHEET 1 AA1 2 TYR A 193 SER A 194 0 SHEET 2 AA1 2 VAL A 202 PHE A 203 -1 O PHE A 203 N TYR A 193 SHEET 1 AA2 5 ARG A 292 PHE A 296 0 SHEET 2 AA2 5 ILE A 311 VAL A 316 -1 O ALA A 314 N PHE A 294 SHEET 3 AA2 5 PHE A 472 SER A 475 1 O ASP A 473 N PHE A 313 SHEET 4 AA2 5 ILE A 361 HIS A 364 -1 N HIS A 364 O PHE A 472 SHEET 5 AA2 5 LEU A 351 ILE A 354 -1 N GLU A 352 O LYS A 363 SHEET 1 AA3 4 VAL A 415 TRP A 420 0 SHEET 2 AA3 4 MET A 426 LEU A 431 -1 O SER A 428 N TRP A 419 SHEET 3 AA3 4 SER A 385 LEU A 390 -1 N PHE A 388 O MET A 427 SHEET 4 AA3 4 THR A 454 PRO A 458 -1 O LYS A 455 N ILE A 389 SHEET 1 AA4 2 ASN A 602 VAL A 603 0 SHEET 2 AA4 2 THR A 612 THR A 613 -1 O THR A 612 N VAL A 603 LINK SG CYS A 195 ZN ZN A 701 1555 1555 2.30 LINK SG CYS A 198 ZN ZN A 701 1555 1555 2.37 LINK NE2 HIS A 212 ZN ZN A 701 1555 1555 2.11 LINK NE2 HIS A 217 ZN ZN A 701 1555 1555 2.25 CISPEP 1 TRP A 326 PRO A 327 0 1.65 SITE 1 AC1 4 CYS A 195 CYS A 198 HIS A 212 HIS A 217 SITE 1 AC2 2 ARG A 664 HIS A 665 SITE 1 AC3 2 SER A 523 HOH A1001 SITE 1 AC4 3 ARG A 226 ARG A 680 HOH A1084 CRYST1 129.800 58.130 66.640 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007704 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015006 0.00000