HEADER SIGNALING PROTEIN 03-FEB-16 5HZV TITLE CRYSTAL STRUCTURE OF THE ZONA PELLUCIDA MODULE OF HUMAN ENDOGLIN/CD105 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,ENDOGLIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: THIS PROTEIN IS A CHIMERA. RESIDUES 368-734 ARE FROM COMPND 8 E. COLI MALTOSE BINDING PROTEIN (MBP), CORRESPOND TO RESIDUES 27-393 COMPND 9 OF SWISS-PROT DATABASE ENTRY P0AEX9 AND CONTAIN MUTATIONS D449A, COMPND 10 K450A, E539A, N540A, A582H, K586H, K606A, A679V, I684V, E726A, E729A, COMPND 11 D730A AND R734N (CORRESPONDING TO D108A, K109A, E198A, N199A, A241H, COMPND 12 K245H, K265A, A338V, I343V, E385A, E388A, D389A AND R393N IN P0AEX9). COMPND 13 RESIDUES 738-981 ARE FROM HUMAN ENDOGLIN PROTEIN AND CORRESPOND TO COMPND 14 RESIDUES 338-581 OF SWISS-PROT DATABASE ENTRY P17813. SUBTRACTING 400 COMPND 15 FROM THE PDB ENTRY RESIDUE NUMBERING RESULTS IN THE NUMBERING COMPND 16 ACCORDING TO UNIPROT ENTRY P17813. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12), HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 83333, 9606; SOURCE 5 STRAIN: K12; SOURCE 6 CELL: ENDOTHELIAL; SOURCE 7 GENE: MALE, B4034, JW3994, ENG, END; SOURCE 8 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 9 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 12 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3216; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS ZONA PELLUCIDA DOMAIN, ANGIOGENESIS, GLYCOPROTEIN, RECEPTOR, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BOKHOVE,T.SAITO,L.JOVINE REVDAT 7 23-OCT-24 5HZV 1 REMARK REVDAT 6 10-JAN-24 5HZV 1 HETSYN SHEET REVDAT 5 29-JUL-20 5HZV 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 06-SEP-17 5HZV 1 REMARK REVDAT 3 23-AUG-17 5HZV 1 COMPND SOURCE DBREF SEQADV REVDAT 2 14-JUN-17 5HZV 1 JRNL REVDAT 1 07-JUN-17 5HZV 0 JRNL AUTH T.SAITO,M.BOKHOVE,R.CROCI,S.ZAMORA-CABALLERO,L.HAN, JRNL AUTH 2 M.LETARTE,D.DE SANCTIS,L.JOVINE JRNL TITL STRUCTURAL BASIS OF THE HUMAN ENDOGLIN-BMP9 INTERACTION: JRNL TITL 2 INSIGHTS INTO BMP SIGNALING AND HHT1. JRNL REF CELL REP V. 19 1917 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28564608 JRNL DOI 10.1016/J.CELREP.2017.05.011 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.GOUGOS,M.LETARTE REMARK 1 TITL PRIMARY STRUCTURE OF ENDOGLIN, AN RGD-CONTAINING REMARK 1 TITL 2 GLYCOPROTEIN OF HUMAN ENDOTHELIAL CELLS. REMARK 1 REF J. BIOL. CHEM. V. 265 8361 1990 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 1692830 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.BORK,C.SANDER REMARK 1 TITL A LARGE DOMAIN COMMON TO SPERM RECEPTORS (ZP2 AND ZP3) AND REMARK 1 TITL 2 TGF-BETA TYPE III RECEPTOR. REMARK 1 REF FEBS LETT. V. 300 237 1992 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 1313375 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.JOVINE,C.C.DARIE,E.S.LITSCHER,P.M.WASSARMAN REMARK 1 TITL ZONA PELLUCIDA DOMAIN PROTEINS. REMARK 1 REF ANNU. REV. BIOCHEM. V. 74 83 2005 REMARK 1 REFN ISSN 0066-4154 REMARK 1 PMID 15952882 REMARK 1 DOI 10.1146/ANNUREV.BIOCHEM.74.082803.133039 REMARK 1 REFERENCE 4 REMARK 1 AUTH L.HAN,M.MONNE,H.OKUMURA,T.SCHWEND,A.L.CHERRY,D.FLOT, REMARK 1 AUTH 2 T.MATSUDA,L.JOVINE REMARK 1 TITL INSIGHTS INTO EGG COAT ASSEMBLY AND EGG-SPERM INTERACTION REMARK 1 TITL 2 FROM THE X-RAY STRUCTURE OF FULL-LENGTH ZP3. REMARK 1 REF CELL V. 143 404 2010 REMARK 1 REFN ISSN 1097-4172 REMARK 1 PMID 20970175 REMARK 1 DOI 10.1016/J.CELL.2010.09.041 REMARK 1 REFERENCE 5 REMARK 1 AUTH M.BOKHOVE,K.NISHIMURA,M.BRUNATI,L.HAN,D.DE SANCTIS, REMARK 1 AUTH 2 L.RAMPOLDI,L.JOVINE REMARK 1 TITL A STRUCTURED INTERDOMAIN LINKER DIRECTS SELF-POLYMERIZATION REMARK 1 TITL 2 OF HUMAN UROMODULIN. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 113 1552 2016 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 26811476 REMARK 1 DOI 10.1073/PNAS.1519803113 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 21429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.310 REMARK 3 FREE R VALUE TEST SET COUNT : 1138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5037 - 5.3915 0.97 2551 153 0.1829 0.2483 REMARK 3 2 5.3915 - 4.2836 0.98 2516 152 0.1832 0.2172 REMARK 3 3 4.2836 - 3.7433 0.99 2550 146 0.2187 0.2365 REMARK 3 4 3.7433 - 3.4016 0.99 2513 157 0.2516 0.2891 REMARK 3 5 3.4016 - 3.1581 0.99 2582 113 0.2837 0.3406 REMARK 3 6 3.1581 - 2.9721 0.99 2534 149 0.3246 0.3668 REMARK 3 7 2.9721 - 2.8234 0.99 2553 143 0.3637 0.4035 REMARK 3 8 2.8234 - 2.7005 0.97 2492 125 0.4031 0.4429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4719 REMARK 3 ANGLE : 0.534 6414 REMARK 3 CHIRALITY : 0.041 727 REMARK 3 PLANARITY : 0.004 823 REMARK 3 DIHEDRAL : 10.633 2844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 844:976) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5078 83.7513 56.5438 REMARK 3 T TENSOR REMARK 3 T11: 0.8027 T22: 0.5983 REMARK 3 T33: 0.7139 T12: -0.0504 REMARK 3 T13: -0.0145 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.2148 L22: 2.9213 REMARK 3 L33: 3.2530 L12: -0.7364 REMARK 3 L13: -1.0954 L23: 1.8018 REMARK 3 S TENSOR REMARK 3 S11: -0.1450 S12: 0.1242 S13: -0.0373 REMARK 3 S21: 0.2215 S22: -0.0513 S23: -0.0776 REMARK 3 S31: 0.2670 S32: 0.1346 S33: -0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 743:843) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9911 50.1162 72.0674 REMARK 3 T TENSOR REMARK 3 T11: 0.7846 T22: 0.9756 REMARK 3 T33: 0.7623 T12: 0.1771 REMARK 3 T13: -0.0616 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.4810 L22: 1.5077 REMARK 3 L33: 1.2673 L12: -0.7179 REMARK 3 L13: -0.8837 L23: 0.5289 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.2571 S13: 0.1353 REMARK 3 S21: 0.0940 S22: -0.1567 S23: 0.2022 REMARK 3 S31: -0.6051 S32: -0.1340 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 844:976) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3244 15.2567 63.0870 REMARK 3 T TENSOR REMARK 3 T11: 0.9802 T22: 0.9352 REMARK 3 T33: 1.1300 T12: 0.0858 REMARK 3 T13: -0.0087 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 0.4743 L22: 1.1965 REMARK 3 L33: 0.8632 L12: -0.0459 REMARK 3 L13: 0.0554 L23: 0.4637 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: 0.2044 S13: -0.4300 REMARK 3 S21: -0.4137 S22: 0.0081 S23: 0.7261 REMARK 3 S31: 0.1789 S32: 0.1638 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000215849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS (JUN 17, 2015) REMARK 200 DATA SCALING SOFTWARE : XSCALE (JUN 17, 2015) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 29.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (2.5.6) REMARK 200 STARTING MODEL: 3SEX REMARK 200 REMARK 200 REMARK: HEXAGONAL ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11.5% EQUAL MIXTURE OF MPD, PEG 1000 REMARK 280 AND PEG 3350 (1:1:1), MES/IMIDAZOLE MIX, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.02667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.51333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.27000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.75667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.78333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 364 REMARK 465 THR A 365 REMARK 465 GLY A 366 REMARK 465 THR A 367 REMARK 465 PRO A 738 REMARK 465 ALA A 739 REMARK 465 PRO A 740 REMARK 465 ILE A 741 REMARK 465 GLN A 742 REMARK 465 THR A 743 REMARK 465 THR A 744 REMARK 465 PRO A 745 REMARK 465 PRO A 746 REMARK 465 LYS A 747 REMARK 465 ASP A 748 REMARK 465 PRO A 977 REMARK 465 ASP A 978 REMARK 465 LEU A 979 REMARK 465 SER A 980 REMARK 465 GLY A 981 REMARK 465 LEU A 982 REMARK 465 GLU A 983 REMARK 465 HIS A 984 REMARK 465 HIS A 985 REMARK 465 HIS A 986 REMARK 465 HIS A 987 REMARK 465 HIS A 988 REMARK 465 HIS A 989 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 548 NE2 GLN A 732 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 401 O GLN A 692 3565 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 475 -61.18 -108.21 REMARK 500 LYS A 569 -1.96 84.76 REMARK 500 TYR A 650 -64.14 -109.98 REMARK 500 PRO A 858 53.88 -68.92 REMARK 500 GLU A 900 -16.36 77.95 REMARK 500 ARG A 910 -4.05 78.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D4G RELATED DB: PDB REMARK 900 ZP-N DOMAIN OF MAMMALIAN SPERM RECEPTOR ZP3 (CRYSTAL FORM II) REMARK 900 RELATED ID: 3NK4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH SPERM RECEPTOR ZP3 AT 2.0 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4WRN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A ZP DOMAIN POLYMERIZATION INTERMEDIATE REMARK 900 RELATED ID: 5I04 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ORPHAN REGION OF HUMAN ENDOGLIN/CD105 REMARK 900 RELATED ID: 5HZW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ORPHAN REGION OF HUMAN ENDOGLIN/CD105 IN REMARK 900 COMPLEX WITH BMP9 REMARK 900 RELATED ID: 5I05 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN BMP9 AT 1.87 A RESOLUTION DBREF 5HZV A 368 734 UNP P0AEX9 MALE_ECOLI 27 393 DBREF 5HZV A 738 981 UNP P17813 EGLN_HUMAN 338 581 SEQADV 5HZV GLU A 364 UNP P0AEX9 EXPRESSION TAG SEQADV 5HZV THR A 365 UNP P0AEX9 EXPRESSION TAG SEQADV 5HZV GLY A 366 UNP P0AEX9 EXPRESSION TAG SEQADV 5HZV THR A 367 UNP P0AEX9 EXPRESSION TAG SEQADV 5HZV ALA A 449 UNP P0AEX9 ASP 108 ENGINEERED MUTATION SEQADV 5HZV ALA A 450 UNP P0AEX9 LYS 109 ENGINEERED MUTATION SEQADV 5HZV ALA A 539 UNP P0AEX9 GLU 198 ENGINEERED MUTATION SEQADV 5HZV ALA A 540 UNP P0AEX9 ASN 199 ENGINEERED MUTATION SEQADV 5HZV HIS A 582 UNP P0AEX9 ALA 241 ENGINEERED MUTATION SEQADV 5HZV HIS A 586 UNP P0AEX9 LYS 245 ENGINEERED MUTATION SEQADV 5HZV ALA A 606 UNP P0AEX9 LYS 265 ENGINEERED MUTATION SEQADV 5HZV VAL A 679 UNP P0AEX9 ALA 338 ENGINEERED MUTATION SEQADV 5HZV VAL A 684 UNP P0AEX9 ILE 343 ENGINEERED MUTATION SEQADV 5HZV ALA A 726 UNP P0AEX9 GLU 385 ENGINEERED MUTATION SEQADV 5HZV ALA A 729 UNP P0AEX9 LYS 388 ENGINEERED MUTATION SEQADV 5HZV ALA A 730 UNP P0AEX9 ASP 389 ENGINEERED MUTATION SEQADV 5HZV ASN A 734 UNP P0AEX9 ARG 393 ENGINEERED MUTATION SEQADV 5HZV ALA A 735 UNP P0AEX9 LINKER SEQADV 5HZV ALA A 736 UNP P0AEX9 LINKER SEQADV 5HZV ALA A 737 UNP P0AEX9 LINKER SEQADV 5HZV LEU A 982 UNP P17813 EXPRESSION TAG SEQADV 5HZV GLU A 983 UNP P17813 EXPRESSION TAG SEQADV 5HZV HIS A 984 UNP P17813 EXPRESSION TAG SEQADV 5HZV HIS A 985 UNP P17813 EXPRESSION TAG SEQADV 5HZV HIS A 986 UNP P17813 EXPRESSION TAG SEQADV 5HZV HIS A 987 UNP P17813 EXPRESSION TAG SEQADV 5HZV HIS A 988 UNP P17813 EXPRESSION TAG SEQADV 5HZV HIS A 989 UNP P17813 EXPRESSION TAG SEQRES 1 A 626 GLU THR GLY THR LYS ILE GLU GLU GLY LYS LEU VAL ILE SEQRES 2 A 626 TRP ILE ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU SEQRES 3 A 626 VAL GLY LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL SEQRES 4 A 626 THR VAL GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO SEQRES 5 A 626 GLN VAL ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE SEQRES 6 A 626 TRP ALA HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY SEQRES 7 A 626 LEU LEU ALA GLU ILE THR PRO ALA ALA ALA PHE GLN ASP SEQRES 8 A 626 LYS LEU TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN SEQRES 9 A 626 GLY LYS LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SEQRES 10 A 626 SER LEU ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO SEQRES 11 A 626 LYS THR TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU SEQRES 12 A 626 LYS ALA LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN SEQRES 13 A 626 GLU PRO TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY SEQRES 14 A 626 GLY TYR ALA PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE SEQRES 15 A 626 LYS ASP VAL GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY SEQRES 16 A 626 LEU THR PHE LEU VAL ASP LEU ILE LYS ASN LYS HIS MET SEQRES 17 A 626 ASN ALA ASP THR ASP TYR SER ILE ALA GLU HIS ALA PHE SEQRES 18 A 626 ASN HIS GLY GLU THR ALA MET THR ILE ASN GLY PRO TRP SEQRES 19 A 626 ALA TRP SER ASN ILE ASP THR SER ALA VAL ASN TYR GLY SEQRES 20 A 626 VAL THR VAL LEU PRO THR PHE LYS GLY GLN PRO SER LYS SEQRES 21 A 626 PRO PHE VAL GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SEQRES 22 A 626 SER PRO ASN LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN SEQRES 23 A 626 TYR LEU LEU THR ASP GLU GLY LEU GLU ALA VAL ASN LYS SEQRES 24 A 626 ASP LYS PRO LEU GLY ALA VAL ALA LEU LYS SER TYR GLU SEQRES 25 A 626 GLU GLU LEU VAL LYS ASP PRO ARG VAL ALA ALA THR MET SEQRES 26 A 626 GLU ASN ALA GLN LYS GLY GLU ILE MET PRO ASN ILE PRO SEQRES 27 A 626 GLN MET SER ALA PHE TRP TYR ALA VAL ARG THR ALA VAL SEQRES 28 A 626 ILE ASN ALA ALA SER GLY ARG GLN THR VAL ASP ALA ALA SEQRES 29 A 626 LEU ALA ALA ALA GLN THR ASN ALA ALA ALA PRO ALA PRO SEQRES 30 A 626 ILE GLN THR THR PRO PRO LYS ASP THR CYS SER PRO GLU SEQRES 31 A 626 LEU LEU MET SER LEU ILE GLN THR LYS CYS ALA ASP ASP SEQRES 32 A 626 ALA MET THR LEU VAL LEU LYS LYS GLU LEU VAL ALA HIS SEQRES 33 A 626 LEU LYS CYS THR ILE THR GLY LEU THR PHE TRP ASP PRO SEQRES 34 A 626 SER CYS GLU ALA GLU ASP ARG GLY ASP LYS PHE VAL LEU SEQRES 35 A 626 ARG SER ALA TYR SER SER CYS GLY MET GLN VAL SER ALA SEQRES 36 A 626 SER MET ILE SER ASN GLU ALA VAL VAL ASN ILE LEU SER SEQRES 37 A 626 SER SER SER PRO GLN ARG LYS LYS VAL HIS CYS LEU ASN SEQRES 38 A 626 MET ASP SER LEU SER PHE GLN LEU GLY LEU TYR LEU SER SEQRES 39 A 626 PRO HIS PHE LEU GLN ALA SER ASN THR ILE GLU PRO GLY SEQRES 40 A 626 GLN GLN SER PHE VAL GLN VAL ARG VAL SER PRO SER VAL SEQRES 41 A 626 SER GLU PHE LEU LEU GLN LEU ASP SER CYS HIS LEU ASP SEQRES 42 A 626 LEU GLY PRO GLU GLY GLY THR VAL GLU LEU ILE GLN GLY SEQRES 43 A 626 ARG ALA ALA LYS GLY ASN CYS VAL SER LEU LEU SER PRO SEQRES 44 A 626 SER PRO GLU GLY ASP PRO ARG PHE SER PHE LEU LEU HIS SEQRES 45 A 626 PHE TYR THR VAL PRO ILE PRO LYS THR GLY THR LEU SER SEQRES 46 A 626 CYS THR VAL ALA LEU ARG PRO LYS THR GLY SER GLN ASP SEQRES 47 A 626 GLN GLU VAL HIS ARG THR VAL PHE MET ARG LEU ASN ILE SEQRES 48 A 626 ILE SER PRO ASP LEU SER GLY LEU GLU HIS HIS HIS HIS SEQRES 49 A 626 HIS HIS HET GLC B 1 12 HET GLC B 2 11 HET GOL A1002 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *15(H2 O) HELIX 1 1 TYR A 384 THR A 398 1 15 HELIX 2 2 LEU A 410 ALA A 419 1 10 HELIX 3 3 HIS A 431 SER A 440 1 10 HELIX 4 4 ALA A 450 LYS A 455 1 6 HELIX 5 5 PRO A 458 VAL A 464 1 7 HELIX 6 6 GLU A 498 ALA A 508 1 11 HELIX 7 7 THR A 524 ALA A 529 1 6 HELIX 8 8 ALA A 553 ASN A 568 1 16 HELIX 9 9 TYR A 577 HIS A 586 1 10 HELIX 10 10 TRP A 599 THR A 604 1 6 HELIX 11 11 ASN A 639 TYR A 650 1 12 HELIX 12 12 ASP A 654 ASP A 663 1 10 HELIX 13 13 LYS A 672 LYS A 680 1 9 HELIX 14 14 PRO A 682 LYS A 693 1 12 HELIX 15 15 GLN A 702 SER A 719 1 18 HELIX 16 16 VAL A 724 ALA A 736 1 13 HELIX 17 17 PRO A 752 LEU A 758 1 7 HELIX 18 18 LYS A 774 LEU A 780 1 7 HELIX 19 19 PRO A 521 PHE A 523 3 3 HELIX 20 20 PRO A 596 ALA A 598 3 3 HELIX 21 21 MET A 845 SER A 847 3 3 HELIX 22 22 GLN A 960 GLN A 962 3 3 SHEET 1 A36 LEU A 374 TRP A 377 0 SHEET 2 A36 VAL A 402 GLU A 405 0 SHEET 3 A36 ILE A 426 ALA A 430 0 SHEET 4 A36 LEU A 443 ALA A 444 0 SHEET 5 A36 ARG A 465 TYR A 466 0 SHEET 6 A36 LYS A 469 LEU A 470 0 SHEET 7 A36 ALA A 472 GLU A 478 0 SHEET 8 A36 SER A 481 ASN A 485 0 SHEET 9 A36 SER A 512 MET A 515 0 SHEET 10 A36 TYR A 534 ALA A 539 0 SHEET 11 A36 LYS A 542 GLY A 549 0 SHEET 12 A36 THR A 589 ASN A 594 0 SHEET 13 A36 TYR A 609 THR A 612 0 SHEET 14 A36 THR A 616 PHE A 617 0 SHEET 15 A36 GLN A 620 PRO A 621 0 SHEET 16 A36 PHE A 625 ASN A 634 0 SHEET 17 A36 ALA A 668 VAL A 669 0 SHEET 18 A36 GLU A 695 ILE A 696 0 SHEET 19 A36 ILE A 759 CYS A 763 0 SHEET 20 A36 ALA A 767 LYS A 773 0 SHEET 21 A36 ILE A 784 THR A 788 0 SHEET 22 A36 GLU A 797 ASP A 798 0 SHEET 23 A36 LYS A 802 ALA A 808 0 SHEET 24 A36 GLN A 815 SER A 817 0 SHEET 25 A36 MET A 820 ILE A 829 0 SHEET 26 A36 SER A 832 LEU A 843 0 SHEET 27 A36 SER A 849 TYR A 855 0 SHEET 28 A36 THR A 866 ILE A 867 0 SHEET 29 A36 GLN A 871 SER A 880 0 SHEET 30 A36 PHE A 886 ASP A 896 0 SHEET 31 A36 THR A 903 GLN A 908 0 SHEET 32 A36 ALA A 911 ALA A 912 0 SHEET 33 A36 VAL A 917 LEU A 919 0 SHEET 34 A36 ARG A 929 LEU A 934 0 SHEET 35 A36 THR A 944 PRO A 955 0 SHEET 36 A36 VAL A 964 ILE A 974 0 SSBOND 1 CYS A 750 CYS A 782 1555 1555 2.04 SSBOND 2 CYS A 763 CYS A 842 1555 1555 2.04 SSBOND 3 CYS A 794 CYS A 812 1555 1555 2.03 SSBOND 4 CYS A 893 CYS A 949 1555 1555 2.03 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.41 CISPEP 1 SER A 880 PRO A 881 0 -10.40 CISPEP 2 VAL A 939 PRO A 940 0 4.54 CRYST1 125.160 125.160 88.540 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007990 0.004613 0.000000 0.00000 SCALE2 0.000000 0.009226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011294 0.00000