HEADER HYDROLASE 03-FEB-16 5HZY TITLE CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ TITLE 2 - P6322 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN RAVZ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 49-502; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 3 STRAIN PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1; SOURCE 6 GENE: LPG1683; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AUTOPHAGY, ATG8, DECONJUGATING ENZYME, PROTEASE, ATG4B, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.KWON,L.KIM,B.-W.KIM,S.B.HONG,H.K.SONG REVDAT 5 20-MAR-24 5HZY 1 REMARK REVDAT 4 04-OCT-17 5HZY 1 REMARK REVDAT 3 30-AUG-17 5HZY 1 REMARK REVDAT 2 17-MAY-17 5HZY 1 JRNL REVDAT 1 09-NOV-16 5HZY 0 JRNL AUTH D.H.KWON,S.KIM,Y.O.JUNG,K.H.ROH,L.KIM,B.-W.KIM,S.B.HONG, JRNL AUTH 2 I.Y.LEE,J.H.SONG,W.C.LEE,E.J.CHOI,K.Y.HWANG,H.K.SONG JRNL TITL THE 1:2 COMPLEX BETWEEN RAVZ AND LC3 REVEALS A MECHANISM FOR JRNL TITL 2 DECONJUGATION OF LC3 ON THE PHAGOPHORE MEMBRANE JRNL REF AUTOPHAGY V. 13 70 2017 JRNL REFN ESSN 1554-8635 JRNL PMID 27791457 JRNL DOI 10.1080/15548627.2016.1243199 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.480 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4440 - 6.1357 0.98 2207 154 0.1843 0.2013 REMARK 3 2 6.1357 - 4.8725 1.00 2117 146 0.1702 0.2099 REMARK 3 3 4.8725 - 4.2573 1.00 2091 145 0.1385 0.1514 REMARK 3 4 4.2573 - 3.8684 1.00 2065 143 0.1482 0.1967 REMARK 3 5 3.8684 - 3.5913 1.00 2070 143 0.1583 0.1930 REMARK 3 6 3.5913 - 3.3796 1.00 2058 143 0.1780 0.2123 REMARK 3 7 3.3796 - 3.2105 1.00 2048 141 0.1983 0.2411 REMARK 3 8 3.2105 - 3.0708 1.00 2052 142 0.2205 0.2472 REMARK 3 9 3.0708 - 2.9526 1.00 2025 141 0.2135 0.2469 REMARK 3 10 2.9526 - 2.8507 1.00 2027 140 0.2133 0.2407 REMARK 3 11 2.8507 - 2.7616 1.00 2024 141 0.2074 0.2571 REMARK 3 12 2.7616 - 2.6827 1.00 2057 142 0.2087 0.2804 REMARK 3 13 2.6827 - 2.6121 1.00 1998 139 0.2217 0.2961 REMARK 3 14 2.6121 - 2.5483 1.00 2026 140 0.2293 0.2914 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3059 REMARK 3 ANGLE : 1.098 4131 REMARK 3 CHIRALITY : 0.056 467 REMARK 3 PLANARITY : 0.006 525 REMARK 3 DIHEDRAL : 18.724 1846 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.5544 71.2023 -8.6906 REMARK 3 T TENSOR REMARK 3 T11: 0.4594 T22: 0.4237 REMARK 3 T33: 0.4275 T12: 0.2258 REMARK 3 T13: -0.0835 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 3.0499 L22: 3.0060 REMARK 3 L33: 2.7288 L12: 0.0377 REMARK 3 L13: -0.0112 L23: -0.7143 REMARK 3 S TENSOR REMARK 3 S11: 0.0864 S12: -0.1004 S13: -0.0138 REMARK 3 S21: -0.1390 S22: -0.0389 S23: -0.1761 REMARK 3 S31: 0.3355 S32: 0.0546 S33: -0.0297 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1786 78.8664 -21.4554 REMARK 3 T TENSOR REMARK 3 T11: 0.3241 T22: 0.4302 REMARK 3 T33: 0.3172 T12: 0.1105 REMARK 3 T13: -0.0166 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.3731 L22: 1.6804 REMARK 3 L33: 2.6874 L12: -0.7403 REMARK 3 L13: -0.2927 L23: 0.2129 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.2674 S13: -0.1473 REMARK 3 S21: -0.0890 S22: 0.0948 S23: 0.0408 REMARK 3 S31: 0.3235 S32: -0.2017 S33: -0.0308 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.8016 58.1230 2.8653 REMARK 3 T TENSOR REMARK 3 T11: 0.7639 T22: 0.3289 REMARK 3 T33: 0.5011 T12: 0.2667 REMARK 3 T13: -0.0548 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.8974 L22: 1.1355 REMARK 3 L33: 1.9368 L12: -0.2633 REMARK 3 L13: 0.2732 L23: -1.3127 REMARK 3 S TENSOR REMARK 3 S11: -0.0708 S12: 0.0444 S13: -0.2274 REMARK 3 S21: 0.0294 S22: 0.0562 S23: -0.0388 REMARK 3 S31: 0.7311 S32: 0.0678 S33: -0.0958 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0-5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.548 REMARK 200 RESOLUTION RANGE LOW (A) : 41.439 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8M SODIUM ACETATE TRIHYDRATE, 200MM REMARK 280 NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.92650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.92650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.92650 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.92650 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.92650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.92650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 627 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 GLY A 200 REMARK 465 ARG A 201 REMARK 465 ASP A 202 REMARK 465 THR A 203 REMARK 465 TYR A 204 REMARK 465 SER A 205 REMARK 465 GLU A 206 REMARK 465 LYS A 349 REMARK 465 SER A 350 REMARK 465 MET A 351 REMARK 465 LEU A 352 REMARK 465 ASN A 353 REMARK 465 PHE A 354 REMARK 465 ILE A 355 REMARK 465 ASP A 433 REMARK 465 ASP A 434 REMARK 465 PHE A 435 REMARK 465 VAL A 436 REMARK 465 THR A 437 REMARK 465 ILE A 438 REMARK 465 GLU A 439 REMARK 465 LYS A 440 REMARK 465 ASP A 441 REMARK 465 GLU A 442 REMARK 465 LEU A 443 REMARK 465 PHE A 444 REMARK 465 ASP A 445 REMARK 465 VAL A 446 REMARK 465 PRO A 447 REMARK 465 ASP A 448 REMARK 465 ILE A 449 REMARK 465 THR A 450 REMARK 465 GLY A 451 REMARK 465 GLU A 452 REMARK 465 GLU A 453 REMARK 465 LEU A 454 REMARK 465 ALA A 455 REMARK 465 SER A 456 REMARK 465 LYS A 457 REMARK 465 LYS A 458 REMARK 465 GLY A 459 REMARK 465 ILE A 460 REMARK 465 GLU A 461 REMARK 465 GLN A 462 REMARK 465 GLY A 463 REMARK 465 ALA A 464 REMARK 465 LEU A 465 REMARK 465 ASP A 466 REMARK 465 LYS A 467 REMARK 465 GLU A 468 REMARK 465 ALA A 469 REMARK 465 LEU A 470 REMARK 465 LEU A 471 REMARK 465 LYS A 472 REMARK 465 GLN A 473 REMARK 465 LYS A 474 REMARK 465 GLN A 475 REMARK 465 ILE A 476 REMARK 465 LYS A 477 REMARK 465 THR A 478 REMARK 465 ASP A 479 REMARK 465 LEU A 480 REMARK 465 LEU A 481 REMARK 465 ASP A 482 REMARK 465 LEU A 483 REMARK 465 ARG A 484 REMARK 465 GLU A 485 REMARK 465 GLU A 486 REMARK 465 ASP A 487 REMARK 465 LYS A 488 REMARK 465 THR A 489 REMARK 465 GLY A 490 REMARK 465 LEU A 491 REMARK 465 LYS A 492 REMARK 465 LYS A 493 REMARK 465 PRO A 494 REMARK 465 LEU A 495 REMARK 465 HIS A 496 REMARK 465 GLY A 497 REMARK 465 GLY A 498 REMARK 465 ILE A 499 REMARK 465 LYS A 500 REMARK 465 VAL A 501 REMARK 465 LYS A 502 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 381 NZ LYS A 427 1.82 REMARK 500 NH1 ARG A 252 OG1 THR A 254 2.09 REMARK 500 OE2 GLU A 381 CE LYS A 427 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 252 NE ARG A 252 CZ -0.079 REMARK 500 ARG A 252 CZ ARG A 252 NH1 -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 40 58.99 -143.00 REMARK 500 SER A 284 64.02 -161.08 REMARK 500 SER A 347 76.00 -113.05 REMARK 500 ASN A 380 -158.37 -171.35 REMARK 500 GLU A 381 139.29 -178.93 REMARK 500 SER A 400 -143.32 60.91 REMARK 500 ASP A 430 -156.47 -138.61 REMARK 500 THR A 431 -150.92 -89.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 94 PRO A 95 -145.84 REMARK 500 ASN A 380 GLU A 381 -126.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 5HZY A 49 502 UNP Q5ZUV9 Q5ZUV9_LEGPH 49 502 SEQADV 5HZY MET A 34 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY HIS A 35 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY HIS A 36 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY HIS A 37 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY HIS A 38 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY HIS A 39 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY HIS A 40 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY GLU A 41 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY ASN A 42 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY LEU A 43 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY TYR A 44 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY PHE A 45 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY GLN A 46 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY GLY A 47 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY SER A 48 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5HZY SER A 258 UNP Q5ZUV9 CYS 258 ENGINEERED MUTATION SEQRES 1 A 469 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 469 GLY SER SER ILE TYR PRO PRO GLU THR SER TRP GLU VAL SEQRES 3 A 469 ASN LYS GLY MET ASN SER SER ARG LEU HIS LYS LEU TYR SEQRES 4 A 469 SER LEU PHE PHE ASP LYS SER SER ALA PHE TYR LEU GLY SEQRES 5 A 469 ASP ASP VAL SER VAL LEU GLU ASP LYS PRO LEU THR GLY SEQRES 6 A 469 ALA TYR GLY PHE GLN SER LYS LYS ASN ASP GLN GLN ILE SEQRES 7 A 469 PHE LEU PHE ARG PRO ASP SER ASP TYR VAL ALA GLY TYR SEQRES 8 A 469 HIS VAL ASP ALA LYS SER ASP ALA GLY TRP VAL ASN ASP SEQRES 9 A 469 LYS LEU ASP ARG ARG LEU SER GLU ILE SER GLU PHE CYS SEQRES 10 A 469 SER LYS ALA THR GLN PRO ALA THR PHE ILE LEU PRO PHE SEQRES 11 A 469 VAL GLU MET PRO THR ASP ILE THR LYS GLY VAL GLN HIS SEQRES 12 A 469 GLN VAL LEU LEU THR ILE SER TYR ASP PRO LYS SER LYS SEQRES 13 A 469 GLN LEU THR PRO THR VAL TYR ASP SER ILE GLY ARG ASP SEQRES 14 A 469 THR TYR SER GLU SER LEU SER SER TYR PHE LYS GLY LYS SEQRES 15 A 469 TYR ARG THR THR CYS ASP GLU ILE LEU THR GLN SER ILE SEQRES 16 A 469 GLU LYS ALA ILE LYS SER THR ASP PHE THR LEU GLY LYS SEQRES 17 A 469 PHE THR ARG ALA ALA TYR ASN HIS GLN ASN ARG LEU THR SEQRES 18 A 469 GLU GLY ASN SER GLY SER TYR THR PHE ARG THR ILE LYS SEQRES 19 A 469 GLU VAL ILE SER SER SER ALA GLN GLY THR GLU VAL LYS SEQRES 20 A 469 ILE PRO GLY SER GLY TYR ILE THR SER ASN SER TYR LEU SEQRES 21 A 469 THR SER GLN HIS VAL GLN ASP ILE GLU SER CYS ILE LYS SEQRES 22 A 469 TYR ARG ASN LEU GLY VAL VAL ASP ILE GLU SER ALA LEU SEQRES 23 A 469 THR GLU GLY LYS THR LEU PRO VAL GLN LEU SER GLU PHE SEQRES 24 A 469 ILE VAL ALA LEU GLU ASP TYR GLY LYS LEU ARG SER GLN SEQRES 25 A 469 GLN SER GLU LYS SER MET LEU ASN PHE ILE GLY TYR SER SEQRES 26 A 469 LYS THR ALA LYS LEU THR ALA VAL GLU LEU LEU ILE GLY SEQRES 27 A 469 ILE LEU ASN ASP ILE LYS GLY LYS ASN GLU ILE SER GLU SEQRES 28 A 469 SER GLN TYR ASP LYS LEU VAL LYS GLU VAL ASP CYS LEU SEQRES 29 A 469 MET ASP SER SER LEU GLY LYS LEU VAL GLN PHE HIS LEU SEQRES 30 A 469 LYS ASN LEU GLY ALA GLU SER LEU GLN LYS LEU VAL LEU SEQRES 31 A 469 PRO CYS VAL LYS PHE ASP ASP THR ILE ASP ASP PHE VAL SEQRES 32 A 469 THR ILE GLU LYS ASP GLU LEU PHE ASP VAL PRO ASP ILE SEQRES 33 A 469 THR GLY GLU GLU LEU ALA SER LYS LYS GLY ILE GLU GLN SEQRES 34 A 469 GLY ALA LEU ASP LYS GLU ALA LEU LEU LYS GLN LYS GLN SEQRES 35 A 469 ILE LYS THR ASP LEU LEU ASP LEU ARG GLU GLU ASP LYS SEQRES 36 A 469 THR GLY LEU LYS LYS PRO LEU HIS GLY GLY ILE LYS VAL SEQRES 37 A 469 LYS FORMUL 2 HOH *65(H2 O) HELIX 1 AA1 GLU A 58 GLY A 62 5 5 HELIX 2 AA2 ASN A 64 TYR A 72 1 9 HELIX 3 AA3 SER A 73 ASP A 77 5 5 HELIX 4 AA4 ASN A 136 LYS A 152 1 17 HELIX 5 AA5 TYR A 211 LYS A 215 5 5 HELIX 6 AA6 CYS A 220 LYS A 233 1 14 HELIX 7 AA7 ASN A 257 GLN A 275 1 19 HELIX 8 AA8 THR A 288 LEU A 293 1 6 HELIX 9 AA9 THR A 294 ARG A 308 1 15 HELIX 10 AB1 VAL A 312 GLY A 322 1 11 HELIX 11 AB2 GLN A 328 GLN A 346 1 19 HELIX 12 AB3 SER A 358 GLY A 378 1 21 HELIX 13 AB4 GLU A 384 MET A 398 1 15 HELIX 14 AB5 ASP A 399 GLY A 414 1 16 HELIX 15 AB6 SER A 417 LEU A 423 1 7 SHEET 1 AA1 2 ILE A 50 TYR A 51 0 SHEET 2 AA1 2 LEU A 310 GLY A 311 -1 O LEU A 310 N TYR A 51 SHEET 1 AA2 7 VAL A 88 VAL A 90 0 SHEET 2 AA2 7 ALA A 99 SER A 104 -1 O GLN A 103 N SER A 89 SHEET 3 AA2 7 GLN A 110 PHE A 114 -1 O LEU A 113 N TYR A 100 SHEET 4 AA2 7 ALA A 157 PRO A 167 1 O THR A 158 N PHE A 112 SHEET 5 AA2 7 HIS A 176 ASP A 185 -1 O TYR A 184 N ALA A 157 SHEET 6 AA2 7 GLN A 190 ASP A 197 -1 O THR A 194 N THR A 181 SHEET 7 AA2 7 THR A 238 LEU A 239 1 O THR A 238 N LEU A 191 SHEET 1 AA3 6 GLY A 133 VAL A 135 0 SHEET 2 AA3 6 VAL A 121 TYR A 124 -1 N GLY A 123 O TRP A 134 SHEET 3 AA3 6 ALA A 157 PRO A 167 1 O VAL A 164 N ALA A 122 SHEET 4 AA3 6 HIS A 176 ASP A 185 -1 O TYR A 184 N ALA A 157 SHEET 5 AA3 6 GLN A 190 ASP A 197 -1 O THR A 194 N THR A 181 SHEET 6 AA3 6 THR A 243 ALA A 246 1 O ALA A 245 N VAL A 195 SHEET 1 AA4 2 ILE A 281 PRO A 282 0 SHEET 2 AA4 2 GLY A 285 TYR A 286 1 N TYR A 286 O ILE A 281 SHEET 1 AA5 2 ILE A 382 SER A 383 0 SHEET 2 AA5 2 VAL A 426 LYS A 427 1 O LYS A 427 N ILE A 382 CISPEP 1 GLU A 92 ASP A 93 0 -11.59 CISPEP 2 ASP A 93 LYS A 94 0 -16.19 CISPEP 3 SER A 188 LYS A 189 0 -9.74 CISPEP 4 GLU A 255 GLY A 256 0 6.27 CISPEP 5 GLN A 346 SER A 347 0 -5.67 CISPEP 6 GLY A 378 LYS A 379 0 10.86 CISPEP 7 LYS A 379 ASN A 380 0 -16.87 CISPEP 8 ASP A 429 ASP A 430 0 -7.53 CRYST1 219.272 219.272 65.853 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004561 0.002633 0.000000 0.00000 SCALE2 0.000000 0.005266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015185 0.00000