HEADER TRANSFERASE 03-FEB-16 5I03 TITLE TRNA-GUANINE TRANSGLYCOSYLASE (TGT) IN CO-CRYSTALLIZED COMPLEX WITH 6- TITLE 2 AMINO-4-[2-(4-METHYLPHENYL)ETHYL]-1,7-DIHYDRO-8H-IMIDAZO[4,5- TITLE 3 G]QUINAZOLIN-8-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS (STRAIN ATCC SOURCE 3 31821 / ZM4 / CP4); SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CO-CRYSTALLIZATION, SHIGELLOSIS, TRANSFERASE, TRANSFERASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR F.R.EHRMANN,A.HEINE,G.KLEBE REVDAT 2 10-JAN-24 5I03 1 REMARK REVDAT 1 15-FEB-17 5I03 0 JRNL AUTH F.R.EHRMANN,J.STOJKO,A.HEINE,F.DIEDERICH,K.REUTER, JRNL AUTH 2 S.SANGLIER-CIANFERANI,G.KLEBE JRNL TITL CO-CRYSTALLIZATION, ISOTHERMAL TITRATION CALORIMETRY AND JRNL TITL 2 NANOESI-MS REVEAL DIMER DISTURBING INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1-2155_1492 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 38682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4987 - 4.1634 0.91 2561 135 0.1798 0.1965 REMARK 3 2 4.1634 - 3.3050 0.94 2584 136 0.1480 0.1527 REMARK 3 3 3.3050 - 2.8873 0.96 2652 140 0.1549 0.1805 REMARK 3 4 2.8873 - 2.6234 0.95 2591 136 0.1682 0.1918 REMARK 3 5 2.6234 - 2.4354 0.97 2642 139 0.1809 0.1902 REMARK 3 6 2.4354 - 2.2918 0.97 2648 140 0.1810 0.2245 REMARK 3 7 2.2918 - 2.1770 0.96 2631 138 0.1857 0.2169 REMARK 3 8 2.1770 - 2.0822 0.97 2642 139 0.1878 0.2314 REMARK 3 9 2.0822 - 2.0021 0.97 2668 141 0.1961 0.2226 REMARK 3 10 2.0021 - 1.9330 0.97 2640 139 0.2141 0.2401 REMARK 3 11 1.9330 - 1.8726 0.98 2680 141 0.2353 0.2604 REMARK 3 12 1.8726 - 1.8190 0.97 2644 139 0.2357 0.2570 REMARK 3 13 1.8190 - 1.7711 0.96 2602 137 0.2543 0.2645 REMARK 3 14 1.7711 - 1.7279 0.94 2562 135 0.2672 0.3077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2903 REMARK 3 ANGLE : 0.830 3922 REMARK 3 CHIRALITY : 0.051 413 REMARK 3 PLANARITY : 0.006 548 REMARK 3 DIHEDRAL : 18.477 1749 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 11:105) REMARK 3 ORIGIN FOR THE GROUP (A): 94.1308 3.0884 19.3556 REMARK 3 T TENSOR REMARK 3 T11: 0.1973 T22: 0.1549 REMARK 3 T33: 0.1516 T12: -0.0071 REMARK 3 T13: -0.0257 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 4.6469 L22: 1.1284 REMARK 3 L33: 1.1934 L12: -1.8861 REMARK 3 L13: -0.0277 L23: 0.1112 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: 0.1972 S13: -0.1605 REMARK 3 S21: -0.0802 S22: -0.0747 S23: 0.0933 REMARK 3 S31: -0.0041 S32: -0.1109 S33: -0.0221 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 106:135) REMARK 3 ORIGIN FOR THE GROUP (A): 93.6497 25.7031 28.0235 REMARK 3 T TENSOR REMARK 3 T11: 0.5325 T22: 0.2534 REMARK 3 T33: 0.3059 T12: 0.0792 REMARK 3 T13: -0.0440 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.3094 L22: 3.4595 REMARK 3 L33: 6.5957 L12: -2.7709 REMARK 3 L13: -0.9387 L23: 1.8536 REMARK 3 S TENSOR REMARK 3 S11: 0.2288 S12: 0.1858 S13: 0.2996 REMARK 3 S21: -0.7985 S22: -0.2371 S23: -0.2568 REMARK 3 S31: -1.2752 S32: -0.6944 S33: 0.0538 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 136:159) REMARK 3 ORIGIN FOR THE GROUP (A): 92.6236 13.3611 29.3502 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.1428 REMARK 3 T33: 0.1251 T12: 0.0321 REMARK 3 T13: -0.0254 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 5.9543 L22: 4.5930 REMARK 3 L33: 3.2187 L12: 2.5132 REMARK 3 L13: 0.8692 L23: 2.2320 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: -0.1441 S13: 0.3524 REMARK 3 S21: 0.0019 S22: 0.0472 S23: 0.2227 REMARK 3 S31: -0.0108 S32: -0.1543 S33: -0.0058 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 160:289) REMARK 3 ORIGIN FOR THE GROUP (A): 106.7222 12.6524 25.3068 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.1292 REMARK 3 T33: 0.1301 T12: 0.0102 REMARK 3 T13: -0.0125 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.3608 L22: 1.3139 REMARK 3 L33: 1.5434 L12: -0.0409 REMARK 3 L13: -0.3690 L23: 0.1506 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: -0.0361 S13: 0.0744 REMARK 3 S21: -0.0552 S22: 0.0333 S23: -0.0921 REMARK 3 S31: -0.1659 S32: 0.0684 S33: -0.0609 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 290:382) REMARK 3 ORIGIN FOR THE GROUP (A): 102.3515 6.2182 -2.1678 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.1299 REMARK 3 T33: 0.1384 T12: -0.0008 REMARK 3 T13: 0.0122 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 2.7663 L22: 1.7107 REMARK 3 L33: 4.8089 L12: -1.6602 REMARK 3 L13: 3.2304 L23: -2.6121 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.1063 S13: 0.0692 REMARK 3 S21: -0.1066 S22: -0.0181 S23: -0.0035 REMARK 3 S31: 0.0793 S32: 0.1176 S33: -0.0113 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 42.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P0D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 8000,100MM MES, 1MM DTT, 10% REMARK 280 DMSO, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.57000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.32050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.57000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.32050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 170.28000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 LYS A 55 REMARK 465 PRO A 56 REMARK 465 GLU A 57 REMARK 465 THR A 58 REMARK 465 VAL A 59 REMARK 465 ARG A 60 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 LYS A 125 REMARK 465 SER A 126 REMARK 465 HIS A 127 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 ARG A 132 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 52 CD CE NZ REMARK 470 ARG A 77 CD NE CZ NH1 NH2 REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 107 CD OE1 NE2 REMARK 470 VAL A 108 CG1 CG2 REMARK 470 LEU A 111 CG CD1 CD2 REMARK 470 SER A 112 OG REMARK 470 THR A 115 OG1 CG2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 CD OE1 NE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 HIS A 133 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 167 CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CD OE1 OE2 REMARK 470 GLU A 220 CD OE1 OE2 REMARK 470 LYS A 264 NZ REMARK 470 ARG A 286 CD NE CZ NH1 NH2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 306 CZ NH1 NH2 REMARK 470 SER A 316 OG REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ILE A 340 CD1 REMARK 470 ARG A 384 NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 62 69.87 -67.27 REMARK 500 GLN A 203 -162.89 -122.50 REMARK 500 SER A 205 -130.70 53.30 REMARK 500 CYS A 281 110.58 -22.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 108.0 REMARK 620 3 CYS A 323 SG 115.1 114.2 REMARK 620 4 HIS A 349 ND1 105.8 113.5 100.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NEZ A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y5W RELATED DB: PDB REMARK 900 1Y5V IS THE SAME PROTEIN LIGAND COMPLEX, BUT THE LIGAND WAS SOAKED REMARK 900 IN REMARK 900 RELATED ID: 4KWO RELATED DB: PDB REMARK 900 RELATED ID: 4LEQ RELATED DB: PDB REMARK 900 RELATED ID: 4PUK RELATED DB: PDB REMARK 900 RELATED ID: 5100 RELATED DB: PDB REMARK 900 RELATED ID: 5102 RELATED DB: PDB REMARK 900 RELATED ID: 1Y5X RELATED DB: PDB REMARK 900 RELATED ID: 1Y5V RELATED DB: PDB REMARK 900 RELATED ID: 3GE7 RELATED DB: PDB REMARK 900 RELATED ID: 3EOS RELATED DB: PDB REMARK 900 RELATED ID: 4FSA RELATED DB: PDB REMARK 900 RELATED ID: 4FR6 RELATED DB: PDB REMARK 900 RELATED ID: 1P0D RELATED DB: PDB DBREF 5I03 A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 5I03 LYS A 312 UNP P28720 THR 312 CONFLICT SEQRES 1 A 386 MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG SEQRES 2 A 386 PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG SEQRES 3 A 386 THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR SEQRES 4 A 386 PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS SEQRES 5 A 386 ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP SEQRES 6 A 386 ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO SEQRES 7 A 386 GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER SEQRES 8 A 386 PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY SEQRES 9 A 386 GLY TYR GLN VAL MET SER LEU SER SER LEU THR LYS GLN SEQRES 10 A 386 SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SEQRES 11 A 386 SER ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE SEQRES 12 A 386 GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP SEQRES 13 A 386 GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SEQRES 14 A 386 SER SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER SEQRES 15 A 386 ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN SEQRES 16 A 386 ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU SEQRES 17 A 386 ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE SEQRES 18 A 386 GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA VAL GLY SEQRES 19 A 386 GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER SEQRES 20 A 386 VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET SEQRES 21 A 386 GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU SEQRES 22 A 386 ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SEQRES 23 A 386 SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO SEQRES 24 A 386 ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS SEQRES 25 A 386 PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS SEQRES 26 A 386 TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY SEQRES 27 A 386 GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE SEQRES 28 A 386 ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER SEQRES 29 A 386 ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE SEQRES 30 A 386 ARG ALA ARG TYR PHE ALA ARG ASN SER HET GOL A 401 6 HET GOL A 402 6 HET ZN A 403 1 HET EDO A 404 4 HET NEZ A 405 24 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NEZ 6-AMINO-4-[2-(4-METHYLPHENYL)ETHYL]-1,7-DIHYDRO-8H- HETNAM 2 NEZ IMIDAZO[4,5-G]QUINAZOLIN-8-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 ZN ZN 2+ FORMUL 5 EDO C2 H6 O2 FORMUL 6 NEZ C18 H17 N5 O FORMUL 7 HOH *220(H2 O) HELIX 1 AA1 ASN A 70 ARG A 77 1 8 HELIX 2 AA2 GLY A 79 LEU A 86 1 8 HELIX 3 AA3 GLY A 88 GLY A 94 1 7 HELIX 4 AA4 GLY A 104 SER A 112 1 9 HELIX 5 AA5 SER A 136 GLY A 148 1 13 HELIX 6 AA6 THR A 164 SER A 188 1 25 HELIX 7 AA7 ARG A 189 ALA A 196 1 8 HELIX 8 AA8 PHE A 207 GLY A 222 1 16 HELIX 9 AA9 GLY A 236 VAL A 248 1 13 HELIX 10 AB1 PRO A 249 LEU A 251 5 3 HELIX 11 AB2 LYS A 264 ARG A 274 1 11 HELIX 12 AB3 VAL A 282 GLY A 288 1 7 HELIX 13 AB4 ASN A 304 SER A 308 5 5 HELIX 14 AB5 CYS A 320 TRP A 326 1 7 HELIX 15 AB6 SER A 327 ALA A 337 1 11 HELIX 16 AB7 GLU A 339 GLU A 367 1 29 HELIX 17 AB8 ARG A 369 PHE A 382 1 14 SHEET 1 AA1 3 SER A 15 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 PHE A 42 0 SHEET 2 AA2 8 MET A 278 PHE A 279 1 O PHE A 279 N ALA A 41 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLY A 200 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 THR A 101 1 N ILE A 99 O ILE A 151 SHEET 8 AA2 8 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 1 AA3 2 LYS A 52 ALA A 53 0 SHEET 2 AA3 2 GLY A 63 ALA A 64 1 O ALA A 64 N LYS A 52 SHEET 1 AA4 2 LYS A 116 GLN A 117 0 SHEET 2 AA4 2 VAL A 122 THR A 123 -1 O THR A 123 N LYS A 116 SHEET 1 AA5 2 GLN A 292 ALA A 293 0 SHEET 2 AA5 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 403 1555 1555 2.33 LINK SG CYS A 320 ZN ZN A 403 1555 1555 2.29 LINK SG CYS A 323 ZN ZN A 403 1555 1555 2.31 LINK ND1 HIS A 349 ZN ZN A 403 1555 1555 2.17 CISPEP 1 THR A 39 PRO A 40 0 -2.17 CISPEP 2 ARG A 77 PRO A 78 0 0.50 CISPEP 3 TYR A 161 PRO A 162 0 -0.71 CISPEP 4 VAL A 262 GLY A 263 0 -0.67 SITE 1 AC1 8 GLY A 46 ALA A 49 VAL A 51 MET A 93 SITE 2 AC1 8 TRP A 95 TYR A 330 LEU A 341 HOH A 514 SITE 1 AC2 7 GLN A 117 SER A 118 ARG A 174 PRO A 252 SITE 2 AC2 7 ASP A 254 LYS A 255 HOH A 527 SITE 1 AC3 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC4 6 ARG A 34 HIS A 145 GLY A 148 SER A 149 SITE 2 AC4 6 HOH A 533 HOH A 543 SITE 1 AC5 14 ASP A 102 TYR A 106 ASP A 156 CYS A 158 SITE 2 AC5 14 ILE A 201 GLN A 203 GLY A 229 GLY A 230 SITE 3 AC5 14 LEU A 231 ALA A 232 MET A 260 GLY A 261 SITE 4 AC5 14 VAL A 282 HOH A 605 CRYST1 85.140 64.641 71.017 90.00 93.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011745 0.000000 0.000740 0.00000 SCALE2 0.000000 0.015470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014109 0.00000