HEADER SIGNALING PROTEIN 03-FEB-16 5I05 TITLE CRYSTAL STRUCTURE OF HUMAN BMP9 AT 1.87 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 320-429; COMPND 5 SYNONYM: GDF-2,BONE MORPHOGENETIC PROTEIN 9,BMP-9; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: MATURE BMP9 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: ENDOTHELIAL; SOURCE 6 GENE: GDF2, BMP9; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HEK293S; SOURCE 11 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS GROWTH DIFFERENTIATION FACTOR 2, CELL PROLIFERATION SIGNAL, CYTOKINE, KEYWDS 2 ANGIOGENESIS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.SAITO,M.BOKHOVE,L.JOVINE REVDAT 5 09-OCT-24 5I05 1 REMARK REVDAT 4 10-JAN-24 5I05 1 REMARK REVDAT 3 06-SEP-17 5I05 1 REMARK REVDAT 2 14-JUN-17 5I05 1 JRNL REVDAT 1 07-JUN-17 5I05 0 JRNL AUTH T.SAITO,M.BOKHOVE,R.CROCI,S.ZAMORA-CABALLERO,L.HAN, JRNL AUTH 2 M.LETARTE,D.DE SANCTIS,L.JOVINE JRNL TITL STRUCTURAL BASIS OF THE HUMAN ENDOGLIN-BMP9 INTERACTION: JRNL TITL 2 INSIGHTS INTO BMP SIGNALING AND HHT1. JRNL REF CELL REP V. 19 1917 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28564608 JRNL DOI 10.1016/J.CELREP.2017.05.011 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.A.BROWN,Q.ZHAO,K.A.BAKER,C.NAIK,C.CHEN,L.PUKAC,M.SINGH, REMARK 1 AUTH 2 T.TSAREVA,Y.PARICE,A.MAHONEY,V.ROSCHKE,I.SANYAL,S.CHOE REMARK 1 TITL CRYSTAL STRUCTURE OF BMP-9 AND FUNCTIONAL INTERACTIONS WITH REMARK 1 TITL 2 PRO-REGION AND RECEPTORS. REMARK 1 REF J. BIOL. CHEM. V. 280 25111 2005 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15851468 REMARK 1 DOI 10.1074/JBC.M503328200 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.Z.MI,C.T.BROWN,Y.GAO,Y.TIAN,V.Q.LE,T.WALZ,T.A.SPRINGER REMARK 1 TITL STRUCTURE OF BONE MORPHOGENETIC PROTEIN 9 PROCOMPLEX. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 112 3710 2015 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 25751889 REMARK 1 DOI 10.1073/PNAS.1501303112 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 15756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3698 - 4.1578 0.97 1375 151 0.1908 0.2256 REMARK 3 2 4.1578 - 3.3006 0.99 1320 147 0.1913 0.1982 REMARK 3 3 3.3006 - 2.8835 0.99 1304 144 0.2076 0.1929 REMARK 3 4 2.8835 - 2.6199 1.00 1280 143 0.2092 0.2317 REMARK 3 5 2.6199 - 2.4322 1.00 1287 144 0.2126 0.2655 REMARK 3 6 2.4322 - 2.2888 0.99 1269 141 0.2165 0.2072 REMARK 3 7 2.2888 - 2.1742 1.00 1282 142 0.2382 0.2957 REMARK 3 8 2.1742 - 2.0795 1.00 1279 141 0.2539 0.2959 REMARK 3 9 2.0795 - 1.9995 1.00 1264 143 0.2888 0.3201 REMARK 3 10 1.9995 - 1.9305 1.00 1263 141 0.3343 0.3349 REMARK 3 11 1.9305 - 1.8701 1.00 1257 139 0.3572 0.3633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 874 REMARK 3 ANGLE : 0.734 1186 REMARK 3 CHIRALITY : 0.047 128 REMARK 3 PLANARITY : 0.005 148 REMARK 3 DIHEDRAL : 14.726 326 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (NOT RESI 900:901) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6333 -10.9840 -23.2336 REMARK 3 T TENSOR REMARK 3 T11: 0.3300 T22: 0.2932 REMARK 3 T33: 0.3098 T12: -0.0651 REMARK 3 T13: -0.0389 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 3.2836 L22: 0.8659 REMARK 3 L33: 1.4834 L12: 0.9207 REMARK 3 L13: -1.2534 L23: 0.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.3516 S12: -0.0036 S13: 0.0002 REMARK 3 S21: -0.2575 S22: 0.2491 S23: -0.0565 REMARK 3 S31: 0.0250 S32: 0.3822 S33: 0.0100 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000215899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.0-4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS (NOVEMBER 3, 2014) REMARK 200 DATA SCALING SOFTWARE : XSCALE (NOVEMBER 3, 2014 REMARK 200 BUILT=20141103) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15763 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 41.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (2.56) REMARK 200 STARTING MODEL: 1KZK REMARK 200 REMARK 200 REMARK: RECTANGULAR PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M LICL, 4% (V/V) PEG6000, 0.1 M NA REMARK 280 -CITRATE, PH 3.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.53000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 35.53000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.83500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.41750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.53000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.25250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.53000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 109.25250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.53000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.41750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 35.53000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 35.53000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.83500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 35.53000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 35.53000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.83500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 35.53000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 109.25250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 35.53000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 36.41750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 35.53000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.41750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 35.53000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 109.25250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 35.53000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 35.53000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.83500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -35.53000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.41750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1047 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 35 -163.14 50.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I04 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ORPHAN REGION OF HUMAN ENDOGLIN/CD105 REMARK 900 RELATED ID: 5HZW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ORPHAN REGION OF HUMAN ENDOGLIN/CD105 IN REMARK 900 COMPLEX WITH BMP9 REMARK 900 RELATED ID: 5HZV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ZONA PELLUCIDA MODULE OF HUMAN ENDOGLIN/ REMARK 900 CD105 DBREF 5I05 A 1 110 UNP Q9UK05 GDF2_HUMAN 320 429 SEQRES 1 A 110 SER ALA GLY ALA GLY SER HIS CYS GLN LYS THR SER LEU SEQRES 2 A 110 ARG VAL ASN PHE GLU ASP ILE GLY TRP ASP SER TRP ILE SEQRES 3 A 110 ILE ALA PRO LYS GLU TYR GLU ALA TYR GLU CYS LYS GLY SEQRES 4 A 110 GLY CYS PHE PHE PRO LEU ALA ASP ASP VAL THR PRO THR SEQRES 5 A 110 LYS HIS ALA ILE VAL GLN THR LEU VAL HIS LEU LYS PHE SEQRES 6 A 110 PRO THR LYS VAL GLY LYS ALA CYS CYS VAL PRO THR LYS SEQRES 7 A 110 LEU SER PRO ILE SER VAL LEU TYR LYS ASP ASP MET GLY SEQRES 8 A 110 VAL PRO THR LEU LYS TYR HIS TYR GLU GLY MET SER VAL SEQRES 9 A 110 ALA GLU CYS GLY CYS ARG HET GOL A 900 6 HET GOL A 901 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *52(H2 O) HELIX 1 AA1 ALA A 46 THR A 50 5 5 HELIX 2 AA2 THR A 52 PHE A 65 1 14 SHEET 1 AA1 2 GLN A 9 THR A 11 0 SHEET 2 AA1 2 GLU A 36 LYS A 38 -1 O GLU A 36 N THR A 11 SHEET 1 AA2 2 ARG A 14 ASN A 16 0 SHEET 2 AA2 2 GLU A 31 GLU A 33 -1 O TYR A 32 N VAL A 15 SHEET 1 AA3 3 ILE A 26 ALA A 28 0 SHEET 2 AA3 3 CYS A 74 LYS A 87 -1 O LEU A 85 N ALA A 28 SHEET 3 AA3 3 PRO A 93 CYS A 109 -1 O TYR A 99 N ILE A 82 SSBOND 1 CYS A 8 CYS A 74 1555 1555 2.03 SSBOND 2 CYS A 37 CYS A 107 1555 1555 2.03 SSBOND 3 CYS A 41 CYS A 109 1555 1555 2.03 SSBOND 4 CYS A 73 CYS A 73 1555 5454 2.03 CISPEP 1 ALA A 28 PRO A 29 0 -0.11 CISPEP 2 PHE A 43 PRO A 44 0 -0.49 SITE 1 AC1 5 PRO A 81 ILE A 82 SER A 83 TYR A 97 SITE 2 AC1 5 HIS A 98 SITE 1 AC2 3 ALA A 4 GLY A 5 HIS A 7 CRYST1 71.060 71.060 145.670 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006865 0.00000