HEADER HYDROLASE 04-FEB-16 5I0M TITLE CRYSTAL STRUCTURE OF DR2231_E79A MUTANT IN COMPLEX WITH DUMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DR2231; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: DR_2231; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET151/D-TOPO KEYWDS ALPHA HELIX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.MOTA,A.M.D.GONCALVES,D.DE SANCTIS REVDAT 4 10-JAN-24 5I0M 1 REMARK REVDAT 3 04-APR-18 5I0M 1 AUTHOR REVDAT 2 14-DEC-16 5I0M 1 JRNL REVDAT 1 26-OCT-16 5I0M 0 JRNL AUTH C.S.MOTA,A.M.GONCALVES,D.DE SANCTIS JRNL TITL DEINOCOCCUS RADIODURANS DR2231 IS A TWO-METAL-ION MECHANISM JRNL TITL 2 HYDROLASE WITH EXCLUSIVE ACTIVITY ON DUTP. JRNL REF FEBS J. V. 283 4274 2016 JRNL REFN ISSN 1742-4658 JRNL PMID 27739259 JRNL DOI 10.1111/FEBS.13923 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.620 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 3272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8472 - 6.1087 0.98 2591 162 0.2071 0.2190 REMARK 3 2 6.1087 - 4.8508 0.99 2608 145 0.1883 0.2400 REMARK 3 3 4.8508 - 4.2383 0.99 2636 146 0.1541 0.1872 REMARK 3 4 4.2383 - 3.8510 0.99 2644 129 0.1506 0.2068 REMARK 3 5 3.8510 - 3.5751 0.99 2619 149 0.1505 0.1763 REMARK 3 6 3.5751 - 3.3644 0.99 2645 134 0.1568 0.2019 REMARK 3 7 3.3644 - 3.1960 0.99 2651 134 0.1583 0.2123 REMARK 3 8 3.1960 - 3.0569 1.00 2610 171 0.1606 0.2420 REMARK 3 9 3.0569 - 2.9393 0.99 2646 129 0.1633 0.2089 REMARK 3 10 2.9393 - 2.8379 0.99 2665 129 0.1757 0.2013 REMARK 3 11 2.8379 - 2.7491 1.00 2652 109 0.1792 0.2629 REMARK 3 12 2.7491 - 2.6706 1.00 2663 123 0.1979 0.2953 REMARK 3 13 2.6706 - 2.6003 1.00 2651 144 0.2014 0.2326 REMARK 3 14 2.6003 - 2.5368 1.00 2635 163 0.1978 0.2651 REMARK 3 15 2.5368 - 2.4792 1.00 2608 131 0.2007 0.2944 REMARK 3 16 2.4792 - 2.4264 1.00 2690 138 0.1996 0.2429 REMARK 3 17 2.4264 - 2.3779 1.00 2580 161 0.2044 0.2394 REMARK 3 18 2.3779 - 2.3330 1.00 2688 156 0.1979 0.2614 REMARK 3 19 2.3330 - 2.2914 1.00 2585 143 0.2150 0.2780 REMARK 3 20 2.2914 - 2.2525 1.00 2666 162 0.2325 0.2912 REMARK 3 21 2.2525 - 2.2162 1.00 2672 127 0.2448 0.3034 REMARK 3 22 2.2162 - 2.1821 1.00 2633 132 0.2597 0.3614 REMARK 3 23 2.1821 - 2.1500 1.00 2671 155 0.2709 0.3454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4026 REMARK 3 ANGLE : 0.805 5486 REMARK 3 CHIRALITY : 0.040 620 REMARK 3 PLANARITY : 0.006 736 REMARK 3 DIHEDRAL : 20.356 1502 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4022 -26.5683 -14.0031 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.1486 REMARK 3 T33: 0.1470 T12: -0.0107 REMARK 3 T13: 0.0041 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.0175 L22: 0.0060 REMARK 3 L33: 0.0012 L12: 0.0116 REMARK 3 L13: 0.0050 L23: 0.0065 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: -0.0421 S13: -0.0881 REMARK 3 S21: 0.0983 S22: -0.0205 S23: -0.0843 REMARK 3 S31: -0.0573 S32: 0.0316 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4765 -11.0942 -26.5179 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.0766 REMARK 3 T33: 0.1237 T12: -0.0199 REMARK 3 T13: -0.0252 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.0296 L22: 0.0200 REMARK 3 L33: 0.0197 L12: 0.0026 REMARK 3 L13: 0.0245 L23: -0.0104 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: 0.0046 S13: 0.1268 REMARK 3 S21: 0.0444 S22: -0.0291 S23: 0.0534 REMARK 3 S31: -0.0530 S32: 0.0483 S33: -0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4192 -25.5846 -23.7382 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: -0.1514 REMARK 3 T33: 0.0520 T12: -0.1172 REMARK 3 T13: 0.0057 T23: 0.0787 REMARK 3 L TENSOR REMARK 3 L11: 0.0402 L22: 0.0705 REMARK 3 L33: 0.0594 L12: -0.0115 REMARK 3 L13: 0.0416 L23: 0.0224 REMARK 3 S TENSOR REMARK 3 S11: -0.0762 S12: -0.0085 S13: 0.0272 REMARK 3 S21: 0.0232 S22: 0.1487 S23: -0.0097 REMARK 3 S31: 0.0582 S32: 0.0802 S33: 0.1786 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6817 -34.3476 -21.8637 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: 0.0258 REMARK 3 T33: 0.1141 T12: -0.0960 REMARK 3 T13: -0.0492 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.0033 L22: 0.0697 REMARK 3 L33: 0.1977 L12: -0.0341 REMARK 3 L13: 0.0628 L23: -0.1142 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: 0.0189 S13: -0.1008 REMARK 3 S21: 0.0584 S22: -0.0178 S23: 0.0151 REMARK 3 S31: 0.0421 S32: -0.1536 S33: 0.0390 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -69.0776 -27.9207 -7.5529 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.2636 REMARK 3 T33: 0.1732 T12: -0.0529 REMARK 3 T13: -0.0166 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.0051 L22: 0.0720 REMARK 3 L33: 0.0560 L12: -0.0140 REMARK 3 L13: -0.0101 L23: 0.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.0387 S13: -0.0882 REMARK 3 S21: -0.0351 S22: -0.0578 S23: 0.0278 REMARK 3 S31: -0.0233 S32: -0.0673 S33: -0.0230 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.3154 -16.2548 -6.3788 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1135 REMARK 3 T33: 0.1205 T12: 0.0533 REMARK 3 T13: -0.0339 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.3265 L22: 0.0945 REMARK 3 L33: 0.1421 L12: 0.1279 REMARK 3 L13: -0.1580 L23: -0.0288 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.1520 S13: 0.1137 REMARK 3 S21: 0.0079 S22: 0.0822 S23: -0.0153 REMARK 3 S31: -0.0348 S32: -0.1614 S33: 0.0345 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.4313 -25.0084 0.0125 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: 0.1159 REMARK 3 T33: 0.1079 T12: 0.0180 REMARK 3 T13: -0.0146 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.0554 L22: 0.0501 REMARK 3 L33: 0.0714 L12: 0.0625 REMARK 3 L13: -0.0541 L23: -0.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: -0.0484 S13: -0.0363 REMARK 3 S21: -0.0042 S22: 0.0304 S23: 0.0542 REMARK 3 S31: 0.0006 S32: -0.1782 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.3059 -32.3050 2.3916 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.0752 REMARK 3 T33: 0.1029 T12: 0.0128 REMARK 3 T13: -0.0191 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.0334 L22: 0.0114 REMARK 3 L33: 0.0214 L12: 0.0212 REMARK 3 L13: -0.0165 L23: -0.0105 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: 0.0115 S13: -0.1406 REMARK 3 S21: -0.0415 S22: -0.0494 S23: -0.0488 REMARK 3 S31: 0.0978 S32: 0.0681 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.3082 -38.9872 -16.6082 REMARK 3 T TENSOR REMARK 3 T11: 0.2439 T22: 0.0987 REMARK 3 T33: 0.0907 T12: -0.0355 REMARK 3 T13: -0.0488 T23: -0.0889 REMARK 3 L TENSOR REMARK 3 L11: 0.0052 L22: 0.0404 REMARK 3 L33: 0.0122 L12: 0.0104 REMARK 3 L13: 0.0088 L23: 0.0172 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.0493 S13: -0.0414 REMARK 3 S21: 0.0153 S22: 0.0063 S23: -0.0117 REMARK 3 S31: 0.0259 S32: -0.0222 S33: -0.0220 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.0773 -30.7826 10.6968 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.1623 REMARK 3 T33: 0.1224 T12: -0.0182 REMARK 3 T13: 0.0003 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.0120 L22: 0.0247 REMARK 3 L33: 0.0122 L12: -0.0156 REMARK 3 L13: 0.0119 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: -0.1482 S13: -0.0011 REMARK 3 S21: 0.1500 S22: 0.0088 S23: 0.0898 REMARK 3 S31: 0.0630 S32: -0.0811 S33: 0.0005 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 34 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.1391 -22.2366 -2.0525 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.1079 REMARK 3 T33: 0.0753 T12: 0.0021 REMARK 3 T13: -0.0053 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.1214 L22: 0.0672 REMARK 3 L33: 0.0955 L12: -0.0269 REMARK 3 L13: 0.0978 L23: 0.0102 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.0003 S13: 0.0415 REMARK 3 S21: -0.0053 S22: -0.0170 S23: -0.0303 REMARK 3 S31: -0.0673 S32: -0.1560 S33: 0.0033 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 7 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6224 -29.6355 -36.9371 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.1126 REMARK 3 T33: 0.1136 T12: -0.0238 REMARK 3 T13: -0.0172 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.1638 L22: 0.0716 REMARK 3 L33: 0.0359 L12: 0.1088 REMARK 3 L13: 0.0010 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: 0.1115 S13: -0.1789 REMARK 3 S21: -0.1027 S22: 0.0735 S23: -0.1229 REMARK 3 S31: 0.0813 S32: 0.0446 S33: -0.0116 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 34 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5853 -22.1058 -18.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.0461 REMARK 3 T33: 0.0750 T12: -0.0228 REMARK 3 T13: -0.0082 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0833 L22: 0.0764 REMARK 3 L33: 0.0672 L12: -0.0189 REMARK 3 L13: 0.0159 L23: 0.0400 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: -0.0419 S13: 0.0377 REMARK 3 S21: -0.0099 S22: 0.0004 S23: 0.0377 REMARK 3 S31: 0.0137 S32: -0.0356 S33: 0.0177 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 94 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6211 -19.2512 -33.8381 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: 0.1574 REMARK 3 T33: 0.1045 T12: -0.0185 REMARK 3 T13: -0.0144 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 0.0395 L22: 0.0077 REMARK 3 L33: 0.0226 L12: -0.0175 REMARK 3 L13: -0.0271 L23: 0.0214 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: 0.1848 S13: 0.0138 REMARK 3 S21: 0.0077 S22: -0.0331 S23: 0.0032 REMARK 3 S31: -0.0165 S32: 0.0288 S33: -0.0068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34099 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 42.839 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17700 REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDBID 2YFC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM ACETATE, PEG3350, PH 7.5, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 74.48000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.13350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.13350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 24 REMARK 465 ALA B 24 REMARK 465 LYS C 112 REMARK 465 ALA C 113 REMARK 465 SER C 114 REMARK 465 GLY C 115 REMARK 465 PRO C 116 REMARK 465 ARG C 117 REMARK 465 ARG C 118 REMARK 465 ALA C 119 REMARK 465 ASP C 120 REMARK 465 GLY C 121 REMARK 465 LYS C 122 REMARK 465 GLN C 123 REMARK 465 LEU C 124 REMARK 465 LYS C 125 REMARK 465 PRO C 126 REMARK 465 GLU C 127 REMARK 465 GLY C 128 REMARK 465 TRP C 129 REMARK 465 ARG C 130 REMARK 465 ALA C 144 REMARK 465 LYS D 112 REMARK 465 ALA D 113 REMARK 465 SER D 114 REMARK 465 GLY D 115 REMARK 465 PRO D 116 REMARK 465 ARG D 117 REMARK 465 ARG D 118 REMARK 465 ALA D 119 REMARK 465 ASP D 120 REMARK 465 GLY D 121 REMARK 465 LYS D 122 REMARK 465 GLN D 123 REMARK 465 LEU D 124 REMARK 465 LYS D 125 REMARK 465 PRO D 126 REMARK 465 GLU D 127 REMARK 465 GLY D 128 REMARK 465 TRP D 129 REMARK 465 ARG D 130 REMARK 465 ALA D 144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 342 O HOH D 344 2.09 REMARK 500 NH1 ARG D 52 O HOH D 201 2.10 REMARK 500 O HOH C 329 O HOH C 335 2.11 REMARK 500 O HOH C 280 O HOH C 293 2.14 REMARK 500 O HOH D 208 O HOH D 276 2.15 REMARK 500 O HOH C 212 O HOH C 242 2.16 REMARK 500 O HOH C 212 O HOH C 317 2.17 REMARK 500 NH1 ARG B 140 O HOH B 301 2.17 REMARK 500 OE2 GLU B 66 O HOH B 302 2.19 REMARK 500 NH2 ARG B 130 O HOH B 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 25 70.47 -155.84 REMARK 500 ASP C 133 73.19 -119.57 REMARK 500 ASP D 97 105.64 -54.58 REMARK 500 ASP D 133 77.73 -106.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 421 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 422 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A 423 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A 424 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A 425 DISTANCE = 7.68 ANGSTROMS REMARK 525 HOH A 426 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A 427 DISTANCE = 8.91 ANGSTROMS REMARK 525 HOH A 428 DISTANCE = 9.98 ANGSTROMS REMARK 525 HOH A 429 DISTANCE = 11.55 ANGSTROMS REMARK 525 HOH B 419 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH B 420 DISTANCE = 9.49 ANGSTROMS REMARK 525 HOH B 421 DISTANCE = 11.47 ANGSTROMS REMARK 525 HOH C 341 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH C 342 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH C 343 DISTANCE = 7.56 ANGSTROMS REMARK 525 HOH C 344 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH C 345 DISTANCE = 8.53 ANGSTROMS REMARK 525 HOH C 346 DISTANCE = 9.03 ANGSTROMS REMARK 525 HOH C 347 DISTANCE = 9.10 ANGSTROMS REMARK 525 HOH C 348 DISTANCE = 9.33 ANGSTROMS REMARK 525 HOH C 349 DISTANCE = 11.11 ANGSTROMS REMARK 525 HOH C 350 DISTANCE = 11.74 ANGSTROMS REMARK 525 HOH C 351 DISTANCE = 12.99 ANGSTROMS REMARK 525 HOH C 352 DISTANCE = 13.04 ANGSTROMS REMARK 525 HOH D 340 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH D 341 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH D 342 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH D 343 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH D 344 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH D 345 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH D 346 DISTANCE = 8.22 ANGSTROMS REMARK 525 HOH D 347 DISTANCE = 8.48 ANGSTROMS REMARK 525 HOH D 348 DISTANCE = 8.56 ANGSTROMS REMARK 525 HOH D 349 DISTANCE = 8.69 ANGSTROMS REMARK 525 HOH D 350 DISTANCE = 9.16 ANGSTROMS REMARK 525 HOH D 351 DISTANCE = 9.52 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP B 201 DBREF 5I0M A 7 144 UNP Q9RS96 Q9RS96_DEIRA 7 144 DBREF 5I0M B 7 144 UNP Q9RS96 Q9RS96_DEIRA 7 144 DBREF 5I0M C 7 144 UNP Q9RS96 Q9RS96_DEIRA 7 144 DBREF 5I0M D 7 144 UNP Q9RS96 Q9RS96_DEIRA 7 144 SEQADV 5I0M ALA A 79 UNP Q9RS96 GLU 79 ENGINEERED MUTATION SEQADV 5I0M ALA B 79 UNP Q9RS96 GLU 79 ENGINEERED MUTATION SEQADV 5I0M ALA C 79 UNP Q9RS96 GLU 79 ENGINEERED MUTATION SEQADV 5I0M ALA D 79 UNP Q9RS96 GLU 79 ENGINEERED MUTATION SEQRES 1 A 138 PRO PRO THR ASN ALA GLU ARG LEU HIS GLU PHE HIS ARG SEQRES 2 A 138 ALA ILE GLY ALA ALA THR PRO GLU ARG PRO THR PRO PRO SEQRES 3 A 138 PRO PRO GLU LEU LEU ARG LEU ARG GLN THR LEU LEU ASP SEQRES 4 A 138 GLU GLU SER ALA GLU VAL ARG ALA GLU ILE ASP HIS LEU SEQRES 5 A 138 LEU ALA ARG GLN ALA ALA GLY GLU ALA LEU SER ALA GLY SEQRES 6 A 138 ASP LEU ALA PRO LEU ALA HIS ALA LEU ALA ASP LEU LEU SEQRES 7 A 138 TYR VAL THR TYR GLY ALA LEU ASP GLN LEU GLY ILE ASP SEQRES 8 A 138 ALA ASP ALA VAL PHE ALA GLU VAL HIS ARG ALA ASN LEU SEQRES 9 A 138 SER LYS ALA SER GLY PRO ARG ARG ALA ASP GLY LYS GLN SEQRES 10 A 138 LEU LYS PRO GLU GLY TRP ARG PRO ALA ASP VAL ARG GLY SEQRES 11 A 138 VAL ILE GLU ARG LEU GLN HIS ALA SEQRES 1 B 138 PRO PRO THR ASN ALA GLU ARG LEU HIS GLU PHE HIS ARG SEQRES 2 B 138 ALA ILE GLY ALA ALA THR PRO GLU ARG PRO THR PRO PRO SEQRES 3 B 138 PRO PRO GLU LEU LEU ARG LEU ARG GLN THR LEU LEU ASP SEQRES 4 B 138 GLU GLU SER ALA GLU VAL ARG ALA GLU ILE ASP HIS LEU SEQRES 5 B 138 LEU ALA ARG GLN ALA ALA GLY GLU ALA LEU SER ALA GLY SEQRES 6 B 138 ASP LEU ALA PRO LEU ALA HIS ALA LEU ALA ASP LEU LEU SEQRES 7 B 138 TYR VAL THR TYR GLY ALA LEU ASP GLN LEU GLY ILE ASP SEQRES 8 B 138 ALA ASP ALA VAL PHE ALA GLU VAL HIS ARG ALA ASN LEU SEQRES 9 B 138 SER LYS ALA SER GLY PRO ARG ARG ALA ASP GLY LYS GLN SEQRES 10 B 138 LEU LYS PRO GLU GLY TRP ARG PRO ALA ASP VAL ARG GLY SEQRES 11 B 138 VAL ILE GLU ARG LEU GLN HIS ALA SEQRES 1 C 138 PRO PRO THR ASN ALA GLU ARG LEU HIS GLU PHE HIS ARG SEQRES 2 C 138 ALA ILE GLY ALA ALA THR PRO GLU ARG PRO THR PRO PRO SEQRES 3 C 138 PRO PRO GLU LEU LEU ARG LEU ARG GLN THR LEU LEU ASP SEQRES 4 C 138 GLU GLU SER ALA GLU VAL ARG ALA GLU ILE ASP HIS LEU SEQRES 5 C 138 LEU ALA ARG GLN ALA ALA GLY GLU ALA LEU SER ALA GLY SEQRES 6 C 138 ASP LEU ALA PRO LEU ALA HIS ALA LEU ALA ASP LEU LEU SEQRES 7 C 138 TYR VAL THR TYR GLY ALA LEU ASP GLN LEU GLY ILE ASP SEQRES 8 C 138 ALA ASP ALA VAL PHE ALA GLU VAL HIS ARG ALA ASN LEU SEQRES 9 C 138 SER LYS ALA SER GLY PRO ARG ARG ALA ASP GLY LYS GLN SEQRES 10 C 138 LEU LYS PRO GLU GLY TRP ARG PRO ALA ASP VAL ARG GLY SEQRES 11 C 138 VAL ILE GLU ARG LEU GLN HIS ALA SEQRES 1 D 138 PRO PRO THR ASN ALA GLU ARG LEU HIS GLU PHE HIS ARG SEQRES 2 D 138 ALA ILE GLY ALA ALA THR PRO GLU ARG PRO THR PRO PRO SEQRES 3 D 138 PRO PRO GLU LEU LEU ARG LEU ARG GLN THR LEU LEU ASP SEQRES 4 D 138 GLU GLU SER ALA GLU VAL ARG ALA GLU ILE ASP HIS LEU SEQRES 5 D 138 LEU ALA ARG GLN ALA ALA GLY GLU ALA LEU SER ALA GLY SEQRES 6 D 138 ASP LEU ALA PRO LEU ALA HIS ALA LEU ALA ASP LEU LEU SEQRES 7 D 138 TYR VAL THR TYR GLY ALA LEU ASP GLN LEU GLY ILE ASP SEQRES 8 D 138 ALA ASP ALA VAL PHE ALA GLU VAL HIS ARG ALA ASN LEU SEQRES 9 D 138 SER LYS ALA SER GLY PRO ARG ARG ALA ASP GLY LYS GLN SEQRES 10 D 138 LEU LYS PRO GLU GLY TRP ARG PRO ALA ASP VAL ARG GLY SEQRES 11 D 138 VAL ILE GLU ARG LEU GLN HIS ALA HET UMP A 201 20 HET UMP B 201 20 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETSYN UMP DUMP FORMUL 5 UMP 2(C9 H13 N2 O8 P) FORMUL 7 HOH *553(H2 O) HELIX 1 AA1 THR A 9 GLY A 22 1 14 HELIX 2 AA2 PRO A 33 ALA A 64 1 32 HELIX 3 AA3 ALA A 70 ASP A 72 5 3 HELIX 4 AA4 LEU A 73 LEU A 94 1 22 HELIX 5 AA5 ASP A 97 SER A 111 1 15 HELIX 6 AA6 ASP A 133 HIS A 143 1 11 HELIX 7 AA7 THR B 9 GLY B 22 1 14 HELIX 8 AA8 PRO B 33 GLY B 65 1 33 HELIX 9 AA9 ALA B 70 ASP B 72 5 3 HELIX 10 AB1 LEU B 73 LEU B 94 1 22 HELIX 11 AB2 ASP B 97 SER B 111 1 15 HELIX 12 AB3 ASP B 133 ALA B 144 1 12 HELIX 13 AB4 THR C 9 GLY C 22 1 14 HELIX 14 AB5 PRO C 33 ALA C 64 1 32 HELIX 15 AB6 ALA C 70 ASP C 72 5 3 HELIX 16 AB7 LEU C 73 LEU C 94 1 22 HELIX 17 AB8 ASP C 97 SER C 111 1 15 HELIX 18 AB9 ASP C 133 GLN C 142 1 10 HELIX 19 AC1 THR D 9 GLY D 22 1 14 HELIX 20 AC2 PRO D 33 ALA D 64 1 32 HELIX 21 AC3 ALA D 70 ASP D 72 5 3 HELIX 22 AC4 LEU D 73 LEU D 94 1 22 HELIX 23 AC5 ASP D 97 SER D 111 1 15 HELIX 24 AC6 ASP D 133 HIS D 143 1 11 SITE 1 AC1 19 VAL A 105 ASN A 109 LYS A 112 LYS A 122 SITE 2 AC1 19 GLN A 123 LYS A 125 HOH A 314 HOH A 318 SITE 3 AC1 19 HOH A 336 HOH A 337 HOH A 339 HOH A 343 SITE 4 AC1 19 HOH A 361 PHE D 17 GLU D 47 ASP D 82 SITE 5 AC1 19 TYR D 85 VAL D 86 HOH D 205 SITE 1 AC2 19 ASN B 109 LYS B 112 LYS B 122 GLN B 123 SITE 2 AC2 19 LYS B 125 HOH B 314 HOH B 319 HOH B 322 SITE 3 AC2 19 HOH B 325 HOH B 333 HOH B 337 HOH B 350 SITE 4 AC2 19 HOH B 356 PHE C 17 LEU C 43 GLU C 47 SITE 5 AC2 19 ASP C 82 TYR C 85 VAL C 86 CRYST1 148.960 78.267 52.368 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019096 0.00000