HEADER OXIDOREDUCTASE 04-FEB-16 5I0T TITLE THIOSULFATE BOUND CYSTEINE DIOXYGENASE AT PH 6.8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DIOXYGENASE TYPE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTEINE DIOXYGENASE TYPE I,CDO-I; COMPND 5 EC: 1.13.11.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CDO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CUPIN-FOLD, CYSTEINE TO CYSTEINE SULFINATE, C93-Y157 CROSSLINK, KEYWDS 2 CATALYSIS OXIDATION, OXIDOREDUCTASE, THIOSULFATE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.KEAN,C.M.DRIGGERS,P.A.KARPLUS REVDAT 4 13-NOV-24 5I0T 1 REMARK REVDAT 3 15-NOV-23 5I0T 1 REMARK REVDAT 2 27-SEP-23 5I0T 1 LINK REVDAT 1 14-DEC-16 5I0T 0 JRNL AUTH C.M.DRIGGERS,K.M.KEAN,L.L.HIRSCHBERGER,R.B.COOLEY, JRNL AUTH 2 M.H.STIPANUK,P.A.KARPLUS JRNL TITL STRUCTURE-BASED INSIGHTS INTO THE ROLE OF THE CYS-TYR JRNL TITL 2 CROSSLINK AND INHIBITOR RECOGNITION BY MAMMALIAN CYSTEINE JRNL TITL 3 DIOXYGENASE. JRNL REF J. MOL. BIOL. V. 428 3999 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 27477048 JRNL DOI 10.1016/J.JMB.2016.07.012 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2386: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.810 REMARK 3 FREE R VALUE TEST SET COUNT : 4333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6076 - 4.2532 1.00 1497 164 0.1666 0.1733 REMARK 3 2 4.2532 - 3.3773 1.00 1395 146 0.1444 0.1830 REMARK 3 3 3.3773 - 2.9508 1.00 1381 153 0.1529 0.1725 REMARK 3 4 2.9508 - 2.6812 1.00 1356 148 0.1550 0.2036 REMARK 3 5 2.6812 - 2.4891 1.00 1324 166 0.1526 0.1796 REMARK 3 6 2.4891 - 2.3424 1.00 1354 139 0.1507 0.2119 REMARK 3 7 2.3424 - 2.2251 1.00 1331 141 0.1463 0.1874 REMARK 3 8 2.2251 - 2.1283 1.00 1355 133 0.1424 0.1884 REMARK 3 9 2.1283 - 2.0464 1.00 1306 161 0.1517 0.1776 REMARK 3 10 2.0464 - 1.9758 1.00 1317 156 0.1522 0.1863 REMARK 3 11 1.9758 - 1.9140 1.00 1337 137 0.1572 0.1890 REMARK 3 12 1.9140 - 1.8593 1.00 1316 132 0.1654 0.2123 REMARK 3 13 1.8593 - 1.8104 1.00 1336 138 0.1630 0.2122 REMARK 3 14 1.8104 - 1.7662 1.00 1328 135 0.1755 0.2216 REMARK 3 15 1.7662 - 1.7260 1.00 1327 135 0.1804 0.2060 REMARK 3 16 1.7260 - 1.6893 1.00 1304 149 0.1843 0.2054 REMARK 3 17 1.6893 - 1.6555 1.00 1308 140 0.1823 0.2149 REMARK 3 18 1.6555 - 1.6243 1.00 1326 154 0.1786 0.2221 REMARK 3 19 1.6243 - 1.5953 1.00 1289 135 0.1902 0.2000 REMARK 3 20 1.5953 - 1.5682 1.00 1307 151 0.1960 0.2439 REMARK 3 21 1.5682 - 1.5429 1.00 1291 157 0.2104 0.2375 REMARK 3 22 1.5429 - 1.5192 1.00 1307 135 0.2250 0.2891 REMARK 3 23 1.5192 - 1.4969 1.00 1329 141 0.2403 0.2326 REMARK 3 24 1.4969 - 1.4758 1.00 1286 139 0.2600 0.2464 REMARK 3 25 1.4758 - 1.4558 1.00 1294 155 0.2701 0.3051 REMARK 3 26 1.4558 - 1.4369 1.00 1306 143 0.2838 0.2899 REMARK 3 27 1.4369 - 1.4190 1.00 1305 149 0.2820 0.2873 REMARK 3 28 1.4190 - 1.4019 1.00 1294 125 0.2957 0.3338 REMARK 3 29 1.4019 - 1.3856 1.00 1309 148 0.3203 0.3084 REMARK 3 30 1.3856 - 1.3700 1.00 1308 128 0.3360 0.3769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1657 REMARK 3 ANGLE : 1.092 2257 REMARK 3 CHIRALITY : 0.082 238 REMARK 3 PLANARITY : 0.006 299 REMARK 3 DIHEDRAL : 12.846 611 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND RESID 5 THROUGH 190 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2405 2.9606 -49.6222 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.1124 REMARK 3 T33: 0.1087 T12: 0.0008 REMARK 3 T13: -0.0055 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.8901 L22: 1.0160 REMARK 3 L33: 0.8696 L12: 0.3980 REMARK 3 L13: -0.1774 L23: 0.1487 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.0175 S13: -0.0511 REMARK 3 S21: 0.0456 S22: -0.0152 S23: -0.0030 REMARK 3 S31: 0.0628 S32: -0.0333 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000216397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44485 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 30.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 27.30 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4IEO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRI-SODIUM CITRATE PH 5.6, 24% REMARK 280 PEG 4000, 0.15 M AMMONIUM ACETATE, PH 6.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.20000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.80000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.80000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.80000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.60000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.80000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.60000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 THR A 4 REMARK 465 PHE A 191 REMARK 465 THR A 192 REMARK 465 THR A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 SER A 196 REMARK 465 LEU A 197 REMARK 465 GLU A 198 REMARK 465 ASN A 199 REMARK 465 ASN A 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 10 CZ NH1 NH2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 184 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 60 O2 THJ A 502 1.34 REMARK 500 O HOH A 638 O HOH A 816 2.00 REMARK 500 O HOH A 756 O HOH A 848 2.05 REMARK 500 O HOH A 676 O HOH A 831 2.07 REMARK 500 O HOH A 795 O HOH A 827 2.07 REMARK 500 O HOH A 739 O HOH A 897 2.09 REMARK 500 NH2 ARG A 60 O2 THJ A 502 2.11 REMARK 500 O HOH A 650 O HOH A 799 2.16 REMARK 500 O CYS A 130 O HOH A 602 2.19 REMARK 500 O HOH A 754 O HOH A 878 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 55 HH22 ARG A 188 7554 1.59 REMARK 500 O HOH A 876 O HOH A 908 6554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 55.35 -108.49 REMARK 500 ASN A 128 -6.28 73.14 REMARK 500 ASN A 128 -12.60 73.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HIS A 88 NE2 100.8 REMARK 620 3 HIS A 140 NE2 98.9 97.4 REMARK 620 4 THJ A 502 S2 100.9 141.3 110.3 REMARK 620 5 THJ A 502 O3 80.2 86.2 176.4 66.6 REMARK 620 6 HOH A 727 O 133.9 118.7 98.6 33.1 79.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THJ A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I0R RELATED DB: PDB REMARK 900 RELATED ID: 5I0S RELATED DB: PDB REMARK 900 RELATED ID: 5I0U RELATED DB: PDB DBREF 5I0T A 1 200 UNP P21816 CDO1_RAT 1 200 SEQRES 1 A 200 MET GLU ARG THR GLU LEU LEU LYS PRO ARG THR LEU ALA SEQRES 2 A 200 ASP LEU ILE ARG ILE LEU HIS GLU LEU PHE ALA GLY ASP SEQRES 3 A 200 GLU VAL ASN VAL GLU GLU VAL GLN ALA VAL LEU GLU ALA SEQRES 4 A 200 TYR GLU SER ASN PRO ALA GLU TRP ALA LEU TYR ALA LYS SEQRES 5 A 200 PHE ASP GLN TYR ARG TYR THR ARG ASN LEU VAL ASP GLN SEQRES 6 A 200 GLY ASN GLY LYS PHE ASN LEU MET ILE LEU CYS TRP GLY SEQRES 7 A 200 GLU GLY HIS GLY SER SER ILE HIS ASP HIS THR ASP SER SEQRES 8 A 200 HIS CYS PHE LEU LYS LEU LEU GLN GLY ASN LEU LYS GLU SEQRES 9 A 200 THR LEU PHE ASP TRP PRO ASP LYS LYS SER ASN GLU MET SEQRES 10 A 200 ILE LYS LYS SER GLU ARG THR LEU ARG GLU ASN GLN CYS SEQRES 11 A 200 ALA TYR ILE ASN ASP SER ILE GLY LEU HIS ARG VAL GLU SEQRES 12 A 200 ASN VAL SER HIS THR GLU PRO ALA VAL SER LEU HIS LEU SEQRES 13 A 200 TYR SER PRO PRO PHE ASP THR CSS HIS ALA PHE ASP GLN SEQRES 14 A 200 ARG THR GLY HIS LYS ASN LYS VAL THR MET THR PHE HIS SEQRES 15 A 200 SER LYS PHE GLY ILE ARG THR PRO PHE THR THR SER GLY SEQRES 16 A 200 SER LEU GLU ASN ASN MODRES 5I0T CSS A 164 CYS MODIFIED RESIDUE HET CSS A 164 22 HET FE A 501 1 HET THJ A 502 5 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM FE FE (III) ION HETNAM THJ THIOSULFATE FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 FE FE 3+ FORMUL 3 THJ O3 S2 2- FORMUL 4 HOH *313(H2 O) HELIX 1 AA1 THR A 11 PHE A 23 1 13 HELIX 2 AA2 ASN A 29 TYR A 40 1 12 HELIX 3 AA3 ASN A 43 ALA A 48 1 6 HELIX 4 AA4 LEU A 49 ALA A 51 5 3 SHEET 1 AA1 7 CYS A 130 ILE A 133 0 SHEET 2 AA1 7 HIS A 92 GLN A 99 -1 N LEU A 95 O ALA A 131 SHEET 3 AA1 7 ALA A 151 SER A 158 -1 O LEU A 154 N LYS A 96 SHEET 4 AA1 7 ASN A 71 TRP A 77 -1 N MET A 73 O HIS A 155 SHEET 5 AA1 7 THR A 59 ASP A 64 -1 N VAL A 63 O LEU A 72 SHEET 6 AA1 7 SER A 183 LYS A 184 1 O SER A 183 N LEU A 62 SHEET 7 AA1 7 ILE A 187 ARG A 188 -1 O ILE A 187 N LYS A 184 SHEET 1 AA2 3 ILE A 85 HIS A 86 0 SHEET 2 AA2 3 THR A 163 PHE A 167 -1 O PHE A 167 N ILE A 85 SHEET 3 AA2 3 LYS A 174 THR A 178 -1 O VAL A 177 N CSS A 164 SHEET 1 AA3 3 SER A 121 LEU A 125 0 SHEET 2 AA3 3 LEU A 102 PHE A 107 -1 N LEU A 102 O LEU A 125 SHEET 3 AA3 3 LEU A 139 GLU A 143 -1 O GLU A 143 N LYS A 103 LINK SG CYS A 93 CE1 TYR A 157 1555 1555 1.80 LINK C THR A 163 N ACSS A 164 1555 1555 1.33 LINK C THR A 163 N BCSS A 164 1555 1555 1.33 LINK C ACSS A 164 N HIS A 165 1555 1555 1.33 LINK C BCSS A 164 N HIS A 165 1555 1555 1.33 LINK NE2 HIS A 86 FE FE A 501 1555 1555 2.03 LINK NE2 HIS A 88 FE FE A 501 1555 1555 2.12 LINK NE2 HIS A 140 FE FE A 501 1555 1555 2.09 LINK FE FE A 501 S2 ATHJ A 502 1555 1555 2.32 LINK FE FE A 501 O3 ATHJ A 502 1555 1555 2.80 LINK FE FE A 501 O AHOH A 727 1555 1555 2.04 CISPEP 1 SER A 158 PRO A 159 0 -6.92 SITE 1 AC1 5 HIS A 86 HIS A 88 HIS A 140 THJ A 502 SITE 2 AC1 5 HOH A 727 SITE 1 AC2 11 TYR A 58 ARG A 60 HIS A 86 HIS A 88 SITE 2 AC2 11 HIS A 140 HIS A 155 TYR A 157 FE A 501 SITE 3 AC2 11 HOH A 712 HOH A 727 HOH A 845 CRYST1 57.600 57.600 122.400 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008170 0.00000