HEADER IMMUNE SYSTEM 05-FEB-16 5I1K TITLE CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY IGHV5-51/IGKV3-20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS MONOCLONAL ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,T.MALIA,J.LUO,G.GILLILAND REVDAT 3 03-AUG-16 5I1K 1 JRNL REVDAT 2 29-JUN-16 5I1K 1 JRNL REVDAT 1 08-JUN-16 5I1K 0 JRNL AUTH A.TEPLYAKOV,G.OBMOLOVA,T.J.MALIA,J.LUO,S.MUZAMMIL,R.SWEET, JRNL AUTH 2 J.C.ALMAGRO,G.L.GILLILAND JRNL TITL STRUCTURAL DIVERSITY IN A HUMAN ANTIBODY GERMLINE LIBRARY. JRNL REF MABS V. 8 1045 2016 JRNL REFN ESSN 1942-0870 JRNL PMID 27210805 JRNL DOI 10.1080/19420862.2016.1190060 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.OBMOLOVA,T.J.MALIA,A.TEPLYAKOV,R.W.SWEET,G.L.GILLILAND REMARK 1 TITL PROTEIN CRYSTALLIZATION WITH MICROSEED MATRIX SCREENING: REMARK 1 TITL 2 APPLICATION TO HUMAN GERMLINE ANTIBODY FABS. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 70 1107 2014 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 25084393 REMARK 1 DOI 10.1107/S2053230X14012552 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 51882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1090 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3210 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 527 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.717 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3359 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4568 ; 1.270 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 5.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;33.240 ;24.228 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;10.652 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.186 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2474 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1697 ; 2.626 ; 2.103 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2116 ; 3.795 ; 4.689 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1662 ; 4.584 ; 2.562 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5520 ; 8.267 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 9.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53058 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 28.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.13100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM SULFATE, 0.1 M CHES PH REMARK 280 9.5, PH 9.50, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.48500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.48500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 GLY H 101 REMARK 465 ILE H 102 REMARK 465 TYR H 103 REMARK 465 SER H 134 REMARK 465 LYS H 135 REMARK 465 SER H 136 REMARK 465 THR H 137 REMARK 465 SER H 138 REMARK 465 GLY H 139 REMARK 465 SER H 221 REMARK 465 CYS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU H 1 CG CD OE1 OE2 REMARK 470 ASP H 100 CG OD1 OD2 REMARK 470 LYS H 220 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 52 -32.15 65.97 REMARK 500 SER L 53 -2.87 -140.15 REMARK 500 ALA L 85 -178.02 -172.80 REMARK 500 ASN L 153 -3.95 72.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE H 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I15 RELATED DB: PDB REMARK 900 RELATED ID: 5I16 RELATED DB: PDB REMARK 900 RELATED ID: 5I17 RELATED DB: PDB REMARK 900 RELATED ID: 5I18 RELATED DB: PDB REMARK 900 RELATED ID: 5I19 RELATED DB: PDB REMARK 900 RELATED ID: 5I1A RELATED DB: PDB REMARK 900 RELATED ID: 5I1C RELATED DB: PDB REMARK 900 RELATED ID: 5I1D RELATED DB: PDB REMARK 900 RELATED ID: 5I1E RELATED DB: PDB REMARK 900 RELATED ID: 5I1G RELATED DB: PDB REMARK 900 RELATED ID: 5I1H RELATED DB: PDB REMARK 900 RELATED ID: 5I1I RELATED DB: PDB REMARK 900 RELATED ID: 5I1J RELATED DB: PDB REMARK 900 RELATED ID: 5I1L RELATED DB: PDB DBREF 5I1K L 1 215 PDB 5I1K 5I1K 1 215 DBREF 5I1K H 1 228 PDB 5I1K 5I1K 1 228 SEQRES 1 L 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER VAL SER SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 215 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR GLY SER SER PRO LEU THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 228 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 228 PRO GLY GLU SER LEU LYS ILE SER CYS LYS GLY SER GLY SEQRES 3 H 228 TYR SER PHE THR SER TYR TRP ILE GLY TRP VAL ARG GLN SEQRES 4 H 228 MET PRO GLY LYS GLY LEU GLU TRP MET GLY ILE ILE TYR SEQRES 5 H 228 PRO GLY ASP SER ASP THR ARG TYR SER PRO SER PHE GLN SEQRES 6 H 228 GLY GLN VAL THR ILE SER ALA ASP LYS SER ILE SER THR SEQRES 7 H 228 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 228 ALA MET TYR TYR CYS ALA ARG TYR ASP GLY ILE TYR GLY SEQRES 9 H 228 GLU LEU ASP PHE TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 228 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 228 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 228 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 228 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 228 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 228 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 228 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 228 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 H 228 CYS HIS HIS HIS HIS HIS HIS HET GOL L 301 6 HET GOL L 302 6 HET GOL L 303 6 HET SO4 L 304 5 HET SO4 L 305 5 HET NHE H 901 13 HET GOL H 902 6 HET SO4 H 903 5 HET SO4 H 904 5 HET SO4 H 905 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 3 GOL 4(C3 H8 O3) FORMUL 6 SO4 5(O4 S 2-) FORMUL 8 NHE C8 H17 N O3 S FORMUL 13 HOH *527(H2 O) HELIX 1 AA1 SER L 30 SER L 32 5 3 HELIX 2 AA2 GLU L 80 PHE L 84 5 5 HELIX 3 AA3 SER L 122 SER L 128 1 7 HELIX 4 AA4 LYS L 184 LYS L 189 1 6 HELIX 5 AA5 SER H 28 TYR H 32 5 5 HELIX 6 AA6 LYS H 74 ILE H 76 5 3 HELIX 7 AA7 LYS H 87 THR H 91 5 5 HELIX 8 AA8 SER H 162 ALA H 164 5 3 HELIX 9 AA9 SER H 193 LEU H 195 5 3 HELIX 10 AB1 LYS H 207 ASN H 210 5 4 SHEET 1 AA1 4 LEU L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 ASP L 71 ILE L 76 -1 O LEU L 74 N LEU L 21 SHEET 4 AA1 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AA2 6 THR L 10 LEU L 13 0 SHEET 2 AA2 6 THR L 103 ILE L 107 1 O LYS L 104 N LEU L 11 SHEET 3 AA2 6 VAL L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AA2 6 LEU L 34 GLN L 39 -1 N GLN L 39 O VAL L 86 SHEET 5 AA2 6 ARG L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA2 6 SER L 54 ARG L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AA3 4 THR L 10 LEU L 13 0 SHEET 2 AA3 4 THR L 103 ILE L 107 1 O LYS L 104 N LEU L 11 SHEET 3 AA3 4 VAL L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AA3 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AA4 4 SER L 115 PHE L 119 0 SHEET 2 AA4 4 THR L 130 PHE L 140 -1 O ASN L 138 N SER L 115 SHEET 3 AA4 4 TYR L 174 SER L 183 -1 O LEU L 180 N VAL L 133 SHEET 4 AA4 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AA5 4 ALA L 154 LEU L 155 0 SHEET 2 AA5 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AA5 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AA5 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SHEET 1 AA6 4 GLN H 3 GLN H 6 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA6 4 THR H 78 TRP H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA6 4 THR H 69 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA7 6 GLU H 10 LYS H 12 0 SHEET 2 AA7 6 THR H 113 VAL H 117 1 O THR H 116 N LYS H 12 SHEET 3 AA7 6 ALA H 92 TYR H 99 -1 N ALA H 92 O VAL H 115 SHEET 4 AA7 6 ILE H 34 GLN H 39 -1 N GLY H 35 O ALA H 97 SHEET 5 AA7 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA7 6 THR H 58 TYR H 60 -1 O ARG H 59 N ILE H 50 SHEET 1 AA8 4 GLU H 10 LYS H 12 0 SHEET 2 AA8 4 THR H 113 VAL H 117 1 O THR H 116 N LYS H 12 SHEET 3 AA8 4 ALA H 92 TYR H 99 -1 N ALA H 92 O VAL H 115 SHEET 4 AA8 4 LEU H 106 TRP H 109 -1 O PHE H 108 N ARG H 98 SHEET 1 AA9 4 SER H 126 LEU H 130 0 SHEET 2 AA9 4 THR H 141 TYR H 151 -1 O LEU H 147 N PHE H 128 SHEET 3 AA9 4 TYR H 182 PRO H 191 -1 O LEU H 184 N VAL H 148 SHEET 4 AA9 4 VAL H 169 THR H 171 -1 N HIS H 170 O VAL H 187 SHEET 1 AB1 4 SER H 126 LEU H 130 0 SHEET 2 AB1 4 THR H 141 TYR H 151 -1 O LEU H 147 N PHE H 128 SHEET 3 AB1 4 TYR H 182 PRO H 191 -1 O LEU H 184 N VAL H 148 SHEET 4 AB1 4 VAL H 175 LEU H 176 -1 N VAL H 175 O SER H 183 SHEET 1 AB2 3 THR H 157 TRP H 160 0 SHEET 2 AB2 3 ILE H 201 HIS H 206 -1 O ASN H 203 N SER H 159 SHEET 3 AB2 3 THR H 211 LYS H 216 -1 O VAL H 213 N VAL H 204 SSBOND 1 CYS L 23 CYS L 89 1555 1555 2.07 SSBOND 2 CYS L 135 CYS L 195 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 4 CYS H 146 CYS H 202 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -7.94 CISPEP 2 SER L 95 PRO L 96 0 2.00 CISPEP 3 TYR L 141 PRO L 142 0 3.34 CISPEP 4 PHE H 152 PRO H 153 0 -7.94 CISPEP 5 GLU H 154 PRO H 155 0 0.93 SITE 1 AC1 11 PHE H 172 PRO H 173 VAL H 175 SER H 183 SITE 2 AC1 11 LEU H 184 SER H 185 SER L 163 SER L 177 SITE 3 AC1 11 SER L 178 THR L 179 HOH L 404 SITE 1 AC2 7 LEU H 45 TRP H 47 HOH H1088 LEU L 97 SITE 2 AC2 7 THR L 98 PHE L 99 HOH L 437 SITE 1 AC3 8 ASN H 161 GLN H 198 ILE H 201 NHE H 901 SITE 2 AC3 8 ASP L 186 HOH L 418 HOH L 445 HOH L 463 SITE 1 AC4 7 LYS H 19 GLN H 82 GLN L 27 SER L 28 SITE 2 AC4 7 HOH L 457 HOH L 465 HOH L 475 SITE 1 AC5 7 PRO H 129 HOH H1013 HOH H1055 SER L 122 SITE 2 AC5 7 ASP L 123 GLU L 124 HOH L 557 SITE 1 AC6 10 LYS H 74 SER H 162 ASN H 203 ASP H 214 SITE 2 AC6 10 HOH H1005 HOH H1115 ASP L 186 HIS L 190 SITE 3 AC6 10 GOL L 303 HOH L 497 SITE 1 AC7 2 ASP H 100 GLY H 104 SITE 1 AC8 6 TYR H 27 SER H 28 TYR H 32 HOH H1068 SITE 2 AC8 6 HOH H1171 ASN L 153 SITE 1 AC9 6 GLY H 8 ALA H 9 ARG H 59 HOH H1147 SITE 2 AC9 6 HOH H1148 SER L 95 SITE 1 AD1 7 PRO H 132 SER H 133 ALA H 142 ALA H 143 SITE 2 AD1 7 HOH H1167 PHE L 117 PHE L 119 CRYST1 63.760 74.090 102.970 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015684 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009712 0.00000