HEADER ISOMERASE 10-FEB-16 5I3G TITLE STRUCTURE-FUNCTION STUDIES ON ROLE OF HYDROPHOBIC CLAMPING OF A BASIC TITLE 2 GLUTAMATE IN CATALYSIS BY TRIOSEPHOSPHATE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE, GLYCOSOMAL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRIOSEPHOSPHATE ISOMERASE, CATALYSIS, HYDROPHOBIC CLAMPING, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.J.DRAKE,A.M.GULICK,J.P.RICHARD,X.ZHAI,K.KIM,C.J.REINHARDT REVDAT 3 27-SEP-23 5I3G 1 JRNL REMARK REVDAT 2 15-JUN-16 5I3G 1 JRNL REVDAT 1 18-MAY-16 5I3G 0 JRNL AUTH J.P.RICHARD,T.L.AMYES,M.M.MALABANAN,X.ZHAI,K.J.KIM, JRNL AUTH 2 C.J.REINHARDT,R.K.WIERENGA,E.J.DRAKE,A.M.GULICK JRNL TITL STRUCTURE-FUNCTION STUDIES OF HYDROPHOBIC RESIDUES THAT JRNL TITL 2 CLAMP A BASIC GLUTAMATE SIDE CHAIN DURING CATALYSIS BY JRNL TITL 3 TRIOSEPHOSPHATE ISOMERASE. JRNL REF BIOCHEMISTRY V. 55 3036 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27149328 JRNL DOI 10.1021/ACS.BIOCHEM.6B00311 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 67473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0350 - 5.6404 0.94 2524 146 0.1763 0.1746 REMARK 3 2 5.6404 - 4.4823 0.98 2681 132 0.1616 0.1809 REMARK 3 3 4.4823 - 3.9172 0.99 2665 135 0.1469 0.1892 REMARK 3 4 3.9172 - 3.5598 0.99 2675 135 0.1511 0.2002 REMARK 3 5 3.5598 - 3.3050 1.00 2702 139 0.1615 0.1948 REMARK 3 6 3.3050 - 3.1104 1.00 2703 155 0.1688 0.2018 REMARK 3 7 3.1104 - 2.9548 1.00 2707 149 0.1733 0.2337 REMARK 3 8 2.9548 - 2.8263 1.00 2711 126 0.1785 0.2048 REMARK 3 9 2.8263 - 2.7175 1.00 2656 148 0.1794 0.2456 REMARK 3 10 2.7175 - 2.6238 1.00 2717 148 0.1719 0.2148 REMARK 3 11 2.6238 - 2.5418 1.00 2698 144 0.1785 0.2369 REMARK 3 12 2.5418 - 2.4692 0.99 2681 145 0.1764 0.2326 REMARK 3 13 2.4692 - 2.4043 0.99 2668 159 0.1766 0.2386 REMARK 3 14 2.4043 - 2.3456 0.99 2686 147 0.1793 0.2435 REMARK 3 15 2.3456 - 2.2923 0.99 2691 114 0.1865 0.3107 REMARK 3 16 2.2923 - 2.2436 0.99 2733 131 0.1781 0.2478 REMARK 3 17 2.2436 - 2.1987 0.99 2676 133 0.1771 0.2364 REMARK 3 18 2.1987 - 2.1572 0.99 2696 130 0.1728 0.2334 REMARK 3 19 2.1572 - 2.1187 0.99 2669 153 0.1774 0.2357 REMARK 3 20 2.1187 - 2.0828 0.99 2678 147 0.1766 0.2377 REMARK 3 21 2.0828 - 2.0492 0.99 2663 164 0.1760 0.2653 REMARK 3 22 2.0492 - 2.0177 0.99 2638 152 0.1924 0.2244 REMARK 3 23 2.0177 - 1.9880 0.99 2657 147 0.2086 0.2891 REMARK 3 24 1.9880 - 1.9600 0.91 2487 132 0.2444 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7604 REMARK 3 ANGLE : 0.835 10336 REMARK 3 CHIRALITY : 0.055 1208 REMARK 3 PLANARITY : 0.005 1323 REMARK 3 DIHEDRAL : 13.769 4524 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67582 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 29.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3TIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-25% PEG 8000, 50-100 MM POTASSIUM REMARK 280 ACETATE, 100 MM BTP PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 GLN A 181 CG CD OE1 NE2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 GLN B 19 CG CD OE1 NE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 GLN B 181 CG CD OE1 NE2 REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 ARG B 226 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 34 CG OD1 ND2 REMARK 470 GLN C 132 CG CD OE1 NE2 REMARK 470 LYS C 152 CG CD CE NZ REMARK 470 LYS C 176 CG CD CE NZ REMARK 470 VAL C 177 CG1 CG2 REMARK 470 LYS C 217 CG CD CE NZ REMARK 470 ARG C 220 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 217 CG CD CE NZ REMARK 470 GLN D 224 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 153 O HOH A 301 1.97 REMARK 500 NZ LYS B 153 O HOH B 301 1.99 REMARK 500 O GLY C 216 O HOH C 301 2.00 REMARK 500 O HOH B 526 O HOH B 555 2.04 REMARK 500 NH1 ARG A 138 O HOH A 302 2.10 REMARK 500 O LYS C 217 O HOH C 302 2.11 REMARK 500 OE1 GLU A 241 O HOH A 303 2.11 REMARK 500 O HOH B 515 O HOH B 516 2.12 REMARK 500 O HOH A 500 O HOH B 327 2.12 REMARK 500 NZ LYS A 70 O HOH A 304 2.14 REMARK 500 O HOH C 459 O HOH C 501 2.14 REMARK 500 O HOH D 525 O HOH D 529 2.14 REMARK 500 O HOH A 527 O HOH A 551 2.15 REMARK 500 O HOH C 498 O HOH C 506 2.15 REMARK 500 OD2 ASP B 111 O HOH B 302 2.16 REMARK 500 NE2 GLN B 132 O HOH B 303 2.16 REMARK 500 NZ LYS C 153 O HOH C 303 2.17 REMARK 500 ND2 ASN B 89 O HOH B 304 2.19 REMARK 500 O HOH D 465 O HOH D 477 2.19 REMARK 500 O HOH D 451 O HOH D 452 2.19 REMARK 500 O HOH A 493 O HOH A 513 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 167 C PRO B 168 N -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 70 CD - CE - NZ ANGL. DEV. = -20.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -149.16 51.52 REMARK 500 PRO B 4 -179.28 -65.65 REMARK 500 LYS B 13 -146.12 50.50 REMARK 500 ASN B 66 161.78 175.84 REMARK 500 LYS C 13 -151.55 54.70 REMARK 500 LYS D 13 -151.79 55.77 REMARK 500 ALA D 172 97.16 -64.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 588 DISTANCE = 6.46 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I3F RELATED DB: PDB REMARK 900 RELATED ID: 5I3I RELATED DB: PDB REMARK 900 RELATED ID: 5I3J RELATED DB: PDB REMARK 900 RELATED ID: 5I3K RELATED DB: PDB REMARK 900 RELATED ID: 5I3H RELATED DB: PDB DBREF 5I3G A 1 250 UNP P04789 TPIS_TRYBB 1 250 DBREF 5I3G B 1 250 UNP P04789 TPIS_TRYBB 1 250 DBREF 5I3G C 1 250 UNP P04789 TPIS_TRYBB 1 250 DBREF 5I3G D 1 250 UNP P04789 TPIS_TRYBB 1 250 SEQADV 5I3G ALA A 172 UNP P04789 ILE 172 ENGINEERED MUTATION SEQADV 5I3G ALA A 232 UNP P04789 LEU 232 ENGINEERED MUTATION SEQADV 5I3G ALA B 172 UNP P04789 ILE 172 ENGINEERED MUTATION SEQADV 5I3G ALA B 232 UNP P04789 LEU 232 ENGINEERED MUTATION SEQADV 5I3G ALA C 172 UNP P04789 ILE 172 ENGINEERED MUTATION SEQADV 5I3G ALA C 232 UNP P04789 LEU 232 ENGINEERED MUTATION SEQADV 5I3G ALA D 172 UNP P04789 ILE 172 ENGINEERED MUTATION SEQADV 5I3G ALA D 232 UNP P04789 LEU 232 ENGINEERED MUTATION SEQRES 1 A 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 A 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 A 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 A 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 A 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 A 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 A 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 A 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 A 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 A 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 A 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 A 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 A 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 A 250 TRP ALA ALA GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 A 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 A 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 A 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 A 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE ALA VAL GLY SEQRES 19 A 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 A 250 ALA THR GLN SEQRES 1 B 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 B 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 B 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 B 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 B 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 B 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 B 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 B 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 B 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 B 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 B 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 B 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 B 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 B 250 TRP ALA ALA GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 B 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 B 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 B 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 B 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE ALA VAL GLY SEQRES 19 B 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 B 250 ALA THR GLN SEQRES 1 C 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 C 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 C 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 C 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 C 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 C 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 C 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 C 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 C 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 C 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 C 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 C 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 C 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 C 250 TRP ALA ALA GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 C 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 C 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 C 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 C 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE ALA VAL GLY SEQRES 19 C 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 C 250 ALA THR GLN SEQRES 1 D 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 D 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 D 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 D 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 D 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 D 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 D 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 D 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 D 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 D 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 D 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 D 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 D 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 D 250 TRP ALA ALA GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 D 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 D 250 SER LYS ILE GLY ALA ASP VAL ALA GLY GLU LEU ARG ILE SEQRES 17 D 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 D 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE ALA VAL GLY SEQRES 19 D 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 D 250 ALA THR GLN FORMUL 5 HOH *1045(H2 O) HELIX 1 AA1 SER A 17 SER A 30 1 14 HELIX 2 AA2 HIS A 47 LEU A 55 1 9 HELIX 3 AA3 SER A 79 PHE A 86 1 8 HELIX 4 AA4 HIS A 95 TYR A 102 1 8 HELIX 5 AA5 THR A 105 SER A 119 1 15 HELIX 6 AA6 THR A 130 SER A 136 1 7 HELIX 7 AA7 ARG A 138 LYS A 153 1 16 HELIX 8 AA8 LEU A 154 ALA A 160 5 7 HELIX 9 AA9 PRO A 168 ALA A 172 5 5 HELIX 10 AB1 THR A 179 ILE A 198 1 20 HELIX 11 AB2 GLY A 199 LEU A 206 1 8 HELIX 12 AB3 ASN A 215 GLN A 224 1 10 HELIX 13 AB4 GLY A 234 PRO A 240 5 7 HELIX 14 AB5 GLU A 241 ALA A 248 1 8 HELIX 15 AB6 SER B 17 THR B 31 1 15 HELIX 16 AB7 THR B 44 VAL B 46 5 3 HELIX 17 AB8 HIS B 47 LEU B 55 1 9 HELIX 18 AB9 SER B 79 PHE B 86 1 8 HELIX 19 AC1 HIS B 95 TYR B 102 1 8 HELIX 20 AC2 THR B 105 SER B 119 1 15 HELIX 21 AC3 THR B 130 SER B 136 1 7 HELIX 22 AC4 ARG B 138 LYS B 153 1 16 HELIX 23 AC5 LEU B 154 ALA B 160 5 7 HELIX 24 AC6 PRO B 168 ALA B 172 5 5 HELIX 25 AC7 THR B 179 ILE B 198 1 20 HELIX 26 AC8 GLY B 199 LEU B 206 1 8 HELIX 27 AC9 ASN B 218 GLN B 224 1 7 HELIX 28 AD1 GLY B 234 PRO B 240 5 7 HELIX 29 AD2 GLU B 241 ALA B 248 1 8 HELIX 30 AD3 SER C 17 SER C 30 1 14 HELIX 31 AD4 THR C 44 VAL C 46 5 3 HELIX 32 AD5 HIS C 47 LEU C 55 1 9 HELIX 33 AD6 SER C 79 PHE C 86 1 8 HELIX 34 AD7 HIS C 95 TYR C 102 1 8 HELIX 35 AD8 THR C 105 SER C 119 1 15 HELIX 36 AD9 THR C 130 SER C 136 1 7 HELIX 37 AE1 ARG C 138 LYS C 152 1 15 HELIX 38 AE2 LYS C 153 LEU C 154 5 2 HELIX 39 AE3 LYS C 155 ALA C 160 5 6 HELIX 40 AE4 PRO C 168 ALA C 172 5 5 HELIX 41 AE5 THR C 179 ILE C 198 1 20 HELIX 42 AE6 GLY C 199 LEU C 206 1 8 HELIX 43 AE7 LYS C 217 GLN C 224 1 8 HELIX 44 AE8 GLY C 234 PRO C 240 5 7 HELIX 45 AE9 GLU C 241 ALA C 248 1 8 HELIX 46 AF1 SER D 17 SER D 30 1 14 HELIX 47 AF2 THR D 44 VAL D 46 5 3 HELIX 48 AF3 HIS D 47 LEU D 55 1 9 HELIX 49 AF4 SER D 79 PHE D 86 1 8 HELIX 50 AF5 HIS D 95 TYR D 102 1 8 HELIX 51 AF6 THR D 105 SER D 119 1 15 HELIX 52 AF7 THR D 130 SER D 136 1 7 HELIX 53 AF8 ARG D 138 LYS D 153 1 16 HELIX 54 AF9 LEU D 154 ALA D 160 5 7 HELIX 55 AG1 PRO D 168 ALA D 172 5 5 HELIX 56 AG2 THR D 179 ILE D 198 1 20 HELIX 57 AG3 GLY D 199 LEU D 206 1 8 HELIX 58 AG4 ASN D 218 GLN D 224 1 7 HELIX 59 AG5 GLY D 234 LYS D 239 5 6 HELIX 60 AG6 PRO D 240 ALA D 248 1 9 SHEET 1 AA1 9 ILE A 7 ASN A 11 0 SHEET 2 AA1 9 GLN A 38 ALA A 42 1 O VAL A 40 N ALA A 10 SHEET 3 AA1 9 PHE A 60 ALA A 64 1 O ALA A 63 N VAL A 41 SHEET 4 AA1 9 TRP A 90 LEU A 93 1 O VAL A 92 N ALA A 64 SHEET 5 AA1 9 MET A 122 ILE A 127 1 O ILE A 124 N ILE A 91 SHEET 6 AA1 9 VAL A 162 TYR A 166 1 O VAL A 163 N ALA A 125 SHEET 7 AA1 9 ILE A 208 TYR A 210 1 O LEU A 209 N ILE A 164 SHEET 8 AA1 9 GLY A 230 VAL A 233 1 O GLY A 230 N TYR A 210 SHEET 9 AA1 9 ILE A 7 ASN A 11 1 N ALA A 9 O PHE A 231 SHEET 1 AA2 9 ILE B 7 ASN B 11 0 SHEET 2 AA2 9 GLN B 38 ALA B 42 1 O VAL B 40 N ALA B 10 SHEET 3 AA2 9 PHE B 60 ALA B 64 1 O ALA B 63 N VAL B 41 SHEET 4 AA2 9 TRP B 90 LEU B 93 1 O VAL B 92 N ALA B 64 SHEET 5 AA2 9 MET B 122 ILE B 127 1 O ILE B 124 N ILE B 91 SHEET 6 AA2 9 VAL B 162 TYR B 166 1 O VAL B 163 N ALA B 125 SHEET 7 AA2 9 ILE B 208 TYR B 210 1 O LEU B 209 N ILE B 164 SHEET 8 AA2 9 GLY B 230 VAL B 233 1 O GLY B 230 N TYR B 210 SHEET 9 AA2 9 ILE B 7 ASN B 11 1 N ALA B 9 O PHE B 231 SHEET 1 AA3 9 ILE C 7 ASN C 11 0 SHEET 2 AA3 9 GLN C 38 ALA C 42 1 O VAL C 40 N ALA C 10 SHEET 3 AA3 9 PHE C 60 ALA C 64 1 O ALA C 63 N VAL C 41 SHEET 4 AA3 9 TRP C 90 LEU C 93 1 O VAL C 92 N ALA C 64 SHEET 5 AA3 9 MET C 122 ILE C 127 1 O ILE C 124 N ILE C 91 SHEET 6 AA3 9 VAL C 162 TYR C 166 1 O VAL C 163 N ALA C 125 SHEET 7 AA3 9 ILE C 208 TYR C 210 1 O LEU C 209 N ILE C 164 SHEET 8 AA3 9 GLY C 230 VAL C 233 1 O GLY C 230 N TYR C 210 SHEET 9 AA3 9 ILE C 7 ASN C 11 1 N ALA C 9 O VAL C 233 SHEET 1 AA4 9 ILE D 7 ASN D 11 0 SHEET 2 AA4 9 GLN D 38 ALA D 42 1 O VAL D 40 N ALA D 10 SHEET 3 AA4 9 PHE D 60 ALA D 64 1 O ALA D 63 N VAL D 41 SHEET 4 AA4 9 TRP D 90 LEU D 93 1 O VAL D 92 N ALA D 64 SHEET 5 AA4 9 MET D 122 ILE D 127 1 O ILE D 124 N ILE D 91 SHEET 6 AA4 9 VAL D 162 TYR D 166 1 O VAL D 163 N ALA D 125 SHEET 7 AA4 9 ILE D 208 TYR D 210 1 O LEU D 209 N ILE D 164 SHEET 8 AA4 9 GLY D 230 VAL D 233 1 O GLY D 230 N TYR D 210 SHEET 9 AA4 9 ILE D 7 ASN D 11 1 N ALA D 9 O PHE D 231 CRYST1 46.420 75.416 75.779 102.04 104.78 97.84 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021542 0.002966 0.006655 0.00000 SCALE2 0.000000 0.013385 0.003516 0.00000 SCALE3 0.000000 0.000000 0.014111 0.00000