HEADER BIOSYNTHETIC PROTEIN 11-FEB-16 5I47 TITLE CRYSTAL STRUCTURE OF RIMK DOMAIN PROTEIN ATP-GRASP FROM SPHAEROBACTER TITLE 2 THERMOPHILUS DSM 20745 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIMK DOMAIN PROTEIN ATP-GRASP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHAEROBACTER THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 479434; SOURCE 4 STRAIN: DSM 20745 / S 6022; SOURCE 5 GENE: STHE_0213; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, PUTATIVE LYSINE KEYWDS 2 BIOSYNTHESIS ENZYME, PSI-BIOLOGY, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,N.DUKE,R.WU,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 25-DEC-19 5I47 1 REMARK REVDAT 2 20-SEP-17 5I47 1 REMARK REVDAT 1 16-MAR-16 5I47 0 JRNL AUTH C.CHANG,N.DUKE,R.WU,S.CLANCY,A.JOACHIMIAK, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF RIMK DOMAIN PROTEIN ATP-GRASP FROM JRNL TITL 2 SPHAEROBACTER THERMOPHILUS DSM 20745 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.2 REMARK 3 NUMBER OF REFLECTIONS : 23363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2021 - 5.6583 1.00 3549 196 0.1781 0.2114 REMARK 3 2 5.6583 - 4.4930 1.00 3511 230 0.1579 0.1760 REMARK 3 3 4.4930 - 3.9255 1.00 3504 227 0.1558 0.2222 REMARK 3 4 3.9255 - 3.5668 1.00 3617 157 0.1834 0.2301 REMARK 3 5 3.5668 - 3.3113 0.98 3485 193 0.2215 0.2908 REMARK 3 6 3.3113 - 3.1162 0.93 3323 134 0.2423 0.2904 REMARK 3 7 3.1162 - 2.9601 0.87 3177 122 0.2548 0.3172 REMARK 3 8 2.9601 - 2.8313 0.77 2724 134 0.2497 0.2456 REMARK 3 9 2.8313 - 2.7223 0.69 2453 126 0.2552 0.3101 REMARK 3 10 2.7223 - 2.6284 0.61 2210 85 0.2480 0.2213 REMARK 3 11 2.6284 - 2.5462 0.55 1946 112 0.2471 0.2555 REMARK 3 12 2.5462 - 2.4735 0.49 1762 79 0.2270 0.3337 REMARK 3 13 2.4735 - 2.4084 0.43 1528 85 0.2200 0.2677 REMARK 3 14 2.4084 - 2.3496 0.35 1268 60 0.2203 0.3225 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3854 REMARK 3 ANGLE : 0.531 5253 REMARK 3 CHIRALITY : 0.044 648 REMARK 3 PLANARITY : 0.004 691 REMARK 3 DIHEDRAL : 15.375 2328 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0926 34.8110 32.4761 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: 0.1647 REMARK 3 T33: 0.1872 T12: -0.0306 REMARK 3 T13: 0.0021 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.0394 L22: 0.0525 REMARK 3 L33: 0.0538 L12: 0.0106 REMARK 3 L13: 0.0069 L23: 0.0181 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: 0.1055 S13: 0.1027 REMARK 3 S21: -0.1336 S22: -0.0621 S23: -0.1115 REMARK 3 S31: -0.1190 S32: 0.1296 S33: -0.0339 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2680 30.1524 23.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.0239 T22: 0.2007 REMARK 3 T33: 0.1933 T12: 0.1150 REMARK 3 T13: -0.5408 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.0188 L22: -0.0034 REMARK 3 L33: 0.0560 L12: 0.0126 REMARK 3 L13: 0.0410 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: 0.1139 S13: 0.0186 REMARK 3 S21: -0.3735 S22: -0.1741 S23: 0.4092 REMARK 3 S31: -0.1358 S32: -0.1615 S33: -0.1877 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4207 39.9864 39.9412 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.1612 REMARK 3 T33: 0.1857 T12: 0.0228 REMARK 3 T13: -0.0420 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.0071 L22: 0.0235 REMARK 3 L33: 0.0081 L12: -0.0022 REMARK 3 L13: -0.0039 L23: 0.0168 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.0162 S13: 0.0340 REMARK 3 S21: 0.0912 S22: -0.0710 S23: 0.1683 REMARK 3 S31: -0.1682 S32: -0.0487 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9013 8.8384 18.8244 REMARK 3 T TENSOR REMARK 3 T11: 0.2933 T22: 0.2027 REMARK 3 T33: 0.1701 T12: 0.0395 REMARK 3 T13: -0.2708 T23: -0.1422 REMARK 3 L TENSOR REMARK 3 L11: 0.0428 L22: 0.1478 REMARK 3 L33: 0.0543 L12: -0.0757 REMARK 3 L13: 0.0343 L23: -0.0791 REMARK 3 S TENSOR REMARK 3 S11: 0.0977 S12: 0.0835 S13: -0.0765 REMARK 3 S21: -0.5221 S22: -0.0742 S23: 0.2230 REMARK 3 S31: 0.1119 S32: -0.0836 S33: 0.0056 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8574 24.4885 10.9696 REMARK 3 T TENSOR REMARK 3 T11: 0.4548 T22: 0.3462 REMARK 3 T33: 0.2026 T12: 0.0079 REMARK 3 T13: 0.1249 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.0055 L22: 0.0782 REMARK 3 L33: 0.0301 L12: 0.0153 REMARK 3 L13: -0.0023 L23: 0.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: 0.0680 S13: 0.0309 REMARK 3 S21: -0.1768 S22: -0.0444 S23: 0.0013 REMARK 3 S31: -0.0322 S32: 0.0158 S33: -0.0079 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6531 -1.4206 13.5571 REMARK 3 T TENSOR REMARK 3 T11: 0.5342 T22: 0.1922 REMARK 3 T33: 0.1314 T12: 0.1313 REMARK 3 T13: -0.0679 T23: -0.1802 REMARK 3 L TENSOR REMARK 3 L11: 0.0199 L22: 0.0180 REMARK 3 L33: 0.0187 L12: -0.0025 REMARK 3 L13: -0.0097 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: 0.0767 S13: -0.0750 REMARK 3 S21: -0.1992 S22: 0.0329 S23: -0.0788 REMARK 3 S31: 0.0779 S32: 0.1066 S33: 0.0062 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.71500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, BIS-TRIS, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.32050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.03750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.40950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.03750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.32050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.40950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 LEU A 158 REMARK 465 GLY A 159 REMARK 465 GLY A 160 REMARK 465 ALA A 174 REMARK 465 HIS A 195 REMARK 465 GLY A 196 REMARK 465 GLY A 197 REMARK 465 TRP A 198 REMARK 465 ARG A 199 REMARK 465 PRO A 200 REMARK 465 GLY A 201 REMARK 465 ARG A 202 REMARK 465 ASP A 203 REMARK 465 ALA A 204 REMARK 465 THR A 205 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 196 REMARK 465 GLY B 197 REMARK 465 TRP B 198 REMARK 465 ARG B 199 REMARK 465 PRO B 200 REMARK 465 GLY B 201 REMARK 465 ARG B 202 REMARK 465 ASP B 203 REMARK 465 ALA B 204 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 156 CG1 CG2 CD1 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 VAL A 244 CG1 CG2 REMARK 470 LEU B 158 CG CD1 CD2 REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 ARG B 162 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 193 CG CD NE CZ NH1 NH2 REMARK 470 THR B 205 OG1 CG2 REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 VAL B 244 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 273 O HOH B 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 156 41.24 -76.80 REMARK 500 ALA A 183 77.56 -115.46 REMARK 500 PHE A 254 24.60 -146.91 REMARK 500 LEU B 7 93.52 -67.83 REMARK 500 ARG B 12 -164.89 -111.47 REMARK 500 ALA B 43 79.84 -151.36 REMARK 500 GLU B 161 78.02 -105.52 REMARK 500 ARG B 173 45.24 -78.37 REMARK 500 ALA B 174 -50.99 62.88 REMARK 500 ALA B 183 68.13 -107.87 REMARK 500 THR B 210 53.13 -107.04 REMARK 500 ARG B 260 30.79 -88.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC100676 RELATED DB: TARGETTRACK DBREF 5I47 A 1 274 UNP D1C6B4 D1C6B4_SPHTD 1 274 DBREF 5I47 B 1 274 UNP D1C6B4 D1C6B4_SPHTD 1 274 SEQADV 5I47 SER A -2 UNP D1C6B4 EXPRESSION TAG SEQADV 5I47 ASN A -1 UNP D1C6B4 EXPRESSION TAG SEQADV 5I47 ALA A 0 UNP D1C6B4 EXPRESSION TAG SEQADV 5I47 SER B -2 UNP D1C6B4 EXPRESSION TAG SEQADV 5I47 ASN B -1 UNP D1C6B4 EXPRESSION TAG SEQADV 5I47 ALA B 0 UNP D1C6B4 EXPRESSION TAG SEQRES 1 A 277 SER ASN ALA MSE ALA ARG VAL ALA LEU LEU ALA ASP ARG SEQRES 2 A 277 LEU ARG VAL GLU GLU ARG LEU LEU ILE GLU ALA PHE ALA SEQRES 3 A 277 ALA ARG GLY HIS GLU ALA VAL LEU VAL GLN PRO ALA LYS SEQRES 4 A 277 LEU ALA LEU SER PRO ALA ALA PRO SER ALA GLY ASP PHE SEQRES 5 A 277 VAL ALA ALA LEU ASP ARG GLY GLU ALA THR ALA GLU ARG SEQRES 6 A 277 ALA VAL LEU ALA ALA LEU LEU ALA SER GLY GLY THR PRO SEQRES 7 A 277 VAL VAL ASN ARG ALA ALA THR ALA ARG LEU LEU ALA ASP SEQRES 8 A 277 ARG MSE ALA LEU LEU ARG HIS LEU ILE LEU ALA ASP ILE SEQRES 9 A 277 PRO VAL PRO GLU THR ARG VAL CYS PHE GLY GLU GLU ALA SEQRES 10 A 277 ILE PHE ALA ALA ILE ALA GLU ILE GLY TYR PRO VAL VAL SEQRES 11 A 277 LEU LYS SER LEU THR VAL ASP PRO GLY PHE PRO VAL ALA SEQRES 12 A 277 LEU VAL GLU ASP GLN ASP ALA ALA GLU ALA ILE VAL GLU SEQRES 13 A 277 HIS ARG ILE MSE LEU GLY GLY GLU ARG ALA VAL LEU VAL SEQRES 14 A 277 GLN GLN PHE ILE PRO ALA ARG ALA GLY GLN SER VAL ARG SEQRES 15 A 277 LEU VAL VAL ALA GLY ARG SER LEU ALA GLY ILE GLU GLN SEQRES 16 A 277 ARG THR HIS GLY GLY TRP ARG PRO GLY ARG ASP ALA THR SEQRES 17 A 277 TYR GLU ALA TYR THR GLY ASP PRO ALA PRO LEU THR ALA SEQRES 18 A 277 LEU ALA GLU ARG ILE ILE GLU ARG LEU GLY THR GLY THR SEQRES 19 A 277 TYR ALA VAL GLU VAL VAL GLU THR GLY ASP GLY PRO VAL SEQRES 20 A 277 VAL VAL GLY VAL ALA ASN LEU VAL ASP PHE ARG SER LEU SEQRES 21 A 277 SER GLY ARG GLY VAL ASP VAL ALA GLY MSE ILE ALA ASP SEQRES 22 A 277 PHE VAL LEU GLY SEQRES 1 B 277 SER ASN ALA MSE ALA ARG VAL ALA LEU LEU ALA ASP ARG SEQRES 2 B 277 LEU ARG VAL GLU GLU ARG LEU LEU ILE GLU ALA PHE ALA SEQRES 3 B 277 ALA ARG GLY HIS GLU ALA VAL LEU VAL GLN PRO ALA LYS SEQRES 4 B 277 LEU ALA LEU SER PRO ALA ALA PRO SER ALA GLY ASP PHE SEQRES 5 B 277 VAL ALA ALA LEU ASP ARG GLY GLU ALA THR ALA GLU ARG SEQRES 6 B 277 ALA VAL LEU ALA ALA LEU LEU ALA SER GLY GLY THR PRO SEQRES 7 B 277 VAL VAL ASN ARG ALA ALA THR ALA ARG LEU LEU ALA ASP SEQRES 8 B 277 ARG MSE ALA LEU LEU ARG HIS LEU ILE LEU ALA ASP ILE SEQRES 9 B 277 PRO VAL PRO GLU THR ARG VAL CYS PHE GLY GLU GLU ALA SEQRES 10 B 277 ILE PHE ALA ALA ILE ALA GLU ILE GLY TYR PRO VAL VAL SEQRES 11 B 277 LEU LYS SER LEU THR VAL ASP PRO GLY PHE PRO VAL ALA SEQRES 12 B 277 LEU VAL GLU ASP GLN ASP ALA ALA GLU ALA ILE VAL GLU SEQRES 13 B 277 HIS ARG ILE MSE LEU GLY GLY GLU ARG ALA VAL LEU VAL SEQRES 14 B 277 GLN GLN PHE ILE PRO ALA ARG ALA GLY GLN SER VAL ARG SEQRES 15 B 277 LEU VAL VAL ALA GLY ARG SER LEU ALA GLY ILE GLU GLN SEQRES 16 B 277 ARG THR HIS GLY GLY TRP ARG PRO GLY ARG ASP ALA THR SEQRES 17 B 277 TYR GLU ALA TYR THR GLY ASP PRO ALA PRO LEU THR ALA SEQRES 18 B 277 LEU ALA GLU ARG ILE ILE GLU ARG LEU GLY THR GLY THR SEQRES 19 B 277 TYR ALA VAL GLU VAL VAL GLU THR GLY ASP GLY PRO VAL SEQRES 20 B 277 VAL VAL GLY VAL ALA ASN LEU VAL ASP PHE ARG SER LEU SEQRES 21 B 277 SER GLY ARG GLY VAL ASP VAL ALA GLY MSE ILE ALA ASP SEQRES 22 B 277 PHE VAL LEU GLY MODRES 5I47 MSE A 90 MET MODIFIED RESIDUE MODRES 5I47 MSE A 157 MET MODIFIED RESIDUE MODRES 5I47 MSE A 267 MET MODIFIED RESIDUE MODRES 5I47 MSE B 90 MET MODIFIED RESIDUE MODRES 5I47 MSE B 157 MET MODIFIED RESIDUE MODRES 5I47 MSE B 267 MET MODIFIED RESIDUE HET MSE A 90 8 HET MSE A 157 8 HET MSE A 267 8 HET MSE B 90 8 HET MSE B 157 8 HET MSE B 267 8 HET GOL B 501 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *118(H2 O) HELIX 1 AA1 ARG A 12 ARG A 25 1 14 HELIX 2 AA2 GLN A 33 LYS A 36 5 4 HELIX 3 AA3 THR A 59 GLY A 72 1 14 HELIX 4 AA4 ARG A 79 ASP A 88 1 10 HELIX 5 AA5 ASP A 88 ALA A 99 1 12 HELIX 6 AA6 GLY A 111 GLY A 123 1 13 HELIX 7 AA7 ASP A 144 ILE A 156 1 13 HELIX 8 AA8 PRO A 213 GLY A 228 1 16 HELIX 9 AA9 PHE A 254 ARG A 260 1 7 HELIX 10 AB1 ASP A 263 LEU A 273 1 11 HELIX 11 AB2 ARG B 12 ARG B 25 1 14 HELIX 12 AB3 GLN B 33 LYS B 36 5 4 HELIX 13 AB4 THR B 59 GLY B 72 1 14 HELIX 14 AB5 ARG B 79 ASP B 88 1 10 HELIX 15 AB6 ASP B 88 ALA B 99 1 12 HELIX 16 AB7 GLY B 111 GLY B 123 1 13 HELIX 17 AB8 ASP B 144 LEU B 158 1 15 HELIX 18 AB9 ASP B 212 GLY B 228 1 17 HELIX 19 AC1 PHE B 254 ARG B 260 1 7 HELIX 20 AC2 ASP B 263 LEU B 273 1 11 SHEET 1 AA1 4 GLU A 28 VAL A 32 0 SHEET 2 AA1 4 ARG A 3 LEU A 7 1 N LEU A 6 O VAL A 30 SHEET 3 AA1 4 ALA A 51 ASP A 54 1 O LEU A 53 N ALA A 5 SHEET 4 AA1 4 VAL A 76 VAL A 77 1 O VAL A 77 N ASP A 54 SHEET 1 AA2 5 ALA A 38 LEU A 39 0 SHEET 2 AA2 5 THR B 106 CYS B 109 -1 O VAL B 108 N LEU A 39 SHEET 3 AA2 5 VAL B 164 GLN B 168 -1 O VAL B 166 N ARG B 107 SHEET 4 AA2 5 VAL B 126 SER B 130 -1 N LYS B 129 O LEU B 165 SHEET 5 AA2 5 ALA B 140 VAL B 142 -1 O VAL B 142 N VAL B 126 SHEET 1 AA3 5 ALA A 140 VAL A 142 0 SHEET 2 AA3 5 VAL A 126 SER A 130 -1 N LEU A 128 O ALA A 140 SHEET 3 AA3 5 VAL A 164 GLN A 168 -1 O LEU A 165 N LYS A 129 SHEET 4 AA3 5 THR A 106 CYS A 109 -1 N ARG A 107 O VAL A 166 SHEET 5 AA3 5 ALA B 38 LEU B 39 -1 O LEU B 39 N VAL A 108 SHEET 1 AA4 5 GLU A 207 ALA A 208 0 SHEET 2 AA4 5 LEU A 187 GLN A 192 -1 N GLN A 192 O GLU A 207 SHEET 3 AA4 5 SER A 177 GLY A 184 -1 N VAL A 181 O ALA A 188 SHEET 4 AA4 5 GLY A 230 GLU A 238 -1 O TYR A 232 N VAL A 182 SHEET 5 AA4 5 PRO A 243 ASN A 250 -1 O GLY A 247 N GLU A 235 SHEET 1 AA5 4 GLU B 28 VAL B 32 0 SHEET 2 AA5 4 ARG B 3 LEU B 7 1 N LEU B 6 O VAL B 30 SHEET 3 AA5 4 ALA B 51 ASP B 54 1 O LEU B 53 N ALA B 5 SHEET 4 AA5 4 VAL B 76 VAL B 77 1 O VAL B 77 N ASP B 54 SHEET 1 AA6 5 TYR B 206 ALA B 208 0 SHEET 2 AA6 5 LEU B 187 ARG B 193 -1 N GLN B 192 O GLU B 207 SHEET 3 AA6 5 SER B 177 GLY B 184 -1 N VAL B 181 O ALA B 188 SHEET 4 AA6 5 GLY B 230 GLU B 238 -1 O GLY B 230 N GLY B 184 SHEET 5 AA6 5 PRO B 243 ASN B 250 -1 O VAL B 246 N GLU B 235 LINK C ARG A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N ALA A 91 1555 1555 1.33 LINK C ILE A 156 N MSE A 157 1555 1555 1.33 LINK C GLY A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N ILE A 268 1555 1555 1.34 LINK C ARG B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N ALA B 91 1555 1555 1.34 LINK C ILE B 156 N MSE B 157 1555 1555 1.33 LINK C MSE B 157 N LEU B 158 1555 1555 1.33 LINK C GLY B 266 N MSE B 267 1555 1555 1.33 LINK C MSE B 267 N ILE B 268 1555 1555 1.33 CISPEP 1 VAL A 77 ASN A 78 0 -1.45 CISPEP 2 TYR A 124 PRO A 125 0 -1.76 CISPEP 3 VAL B 77 ASN B 78 0 3.63 CISPEP 4 TYR B 124 PRO B 125 0 -2.03 SITE 1 AC1 6 PRO A 41 ALA A 42 VAL B 103 PRO B 104 SITE 2 AC1 6 GLU B 105 THR B 106 CRYST1 62.641 64.819 160.075 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006247 0.00000