HEADER LYASE 16-FEB-16 5I67 TITLE CRYSTAL STRUCTURE ANALYSIS OF MTB PEPCK MUTANT C273S COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE [GTP]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCK,GTP-DEPENDENT PHOSPHOENOLPYRUVATE CARBOXYKINASE,GTP- COMPND 5 PEPCK; COMPND 6 EC: 4.1.1.32; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RA; SOURCE 3 ORGANISM_TAXID: 419947; SOURCE 4 GENE: PCKG, MRA_0219; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PEPCK, MUTANT C273S, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DOSTAL,P.PACHL,I.MACHOVA,I.PICHOVA,J.SNASEL REVDAT 2 10-JAN-24 5I67 1 LINK REVDAT 1 06-APR-16 5I67 0 JRNL AUTH J.DOSTAL,P.PACHL,I.MACHOVA,I.PICHOVA,J.SNASEL JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF MTB PEPCK MUTANT C273S JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 22899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1206 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.551 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.293 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.279 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4738 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4303 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6452 ; 1.312 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9899 ; 0.913 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 6.399 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;34.363 ;23.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 710 ;12.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.441 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 679 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5413 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1104 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2350 ; 2.036 ; 4.526 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2349 ; 2.034 ; 4.525 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2934 ; 3.314 ; 6.786 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2935 ; 3.314 ; 6.786 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2388 ; 2.098 ; 4.695 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2388 ; 2.098 ; 4.695 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3519 ; 3.452 ; 6.953 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5249 ; 5.178 ;36.013 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5246 ; 5.176 ;36.018 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5I67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.602 REMARK 200 RESOLUTION RANGE LOW (A) : 43.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4R43 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.6, 30% PEG REMARK 280 300, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.65100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.65100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.86050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.29900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.86050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.29900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.65100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.86050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.29900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.65100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.86050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.29900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 854 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ILE A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 306A REMARK 465 GLN A 447 REMARK 465 THR A 448 REMARK 465 ALA A 449 REMARK 465 ALA A 450 REMARK 465 ALA A 451 REMARK 465 GLU A 452 REMARK 465 GLY A 453 REMARK 465 LYS A 454 REMARK 465 VAL A 455 REMARK 465 GLY A 456 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 LYS A 485 CG CD CE NZ REMARK 470 SER A 490 OG REMARK 470 LYS A 491 CE NZ REMARK 470 ARG A 508 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 LYS A 594 CG CD CE NZ REMARK 470 LYS A 601 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 108.02 -164.59 REMARK 500 THR A 11 50.16 -119.30 REMARK 500 GLN A 31 64.28 61.81 REMARK 500 CYS A 89 71.06 -105.63 REMARK 500 ASP A 173 -139.64 -128.11 REMARK 500 LEU A 233 -55.41 -121.93 REMARK 500 ASN A 260 41.81 71.36 REMARK 500 ASP A 296 -51.18 -151.84 REMARK 500 ASP A 305 -80.46 -172.88 REMARK 500 PHE A 317 69.62 -118.90 REMARK 500 GLU A 377 -62.40 -146.84 REMARK 500 THR A 423 -57.02 75.37 REMARK 500 HIS A 486 42.50 -96.77 REMARK 500 PHE A 514 -127.89 55.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 853 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 854 DISTANCE = 10.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 706 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 276 OG1 REMARK 620 2 GDP A 701 O1B 77.0 REMARK 620 3 HOH A 815 O 85.9 103.5 REMARK 620 4 HOH A 821 O 75.9 89.7 154.7 REMARK 620 5 HOH A 834 O 85.7 162.7 75.5 85.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 706 DBREF 5I67 A 2 605 UNP A5TYT6 PCKG_MYCTA 2 606 SEQADV 5I67 SER A 273 UNP A5TYT6 CYS 273 ENGINEERED MUTATION SEQRES 1 A 605 THR SER ALA THR ILE PRO GLY LEU ASP THR ALA PRO THR SEQRES 2 A 605 ASN HIS GLN GLY LEU LEU SER TRP VAL GLU GLU VAL ALA SEQRES 3 A 605 GLU LEU THR GLN PRO ASP ARG VAL VAL PHE THR ASP GLY SEQRES 4 A 605 SER GLU GLU GLU PHE GLN ARG LEU CYS ASP GLN LEU VAL SEQRES 5 A 605 GLU ALA GLY THR PHE ILE ARG LEU ASN PRO GLU LYS HIS SEQRES 6 A 605 LYS ASN SER TYR LEU ALA LEU SER ASP PRO SER ASP VAL SEQRES 7 A 605 ALA ARG VAL GLU SER ARG THR TYR ILE CYS SER ALA LYS SEQRES 8 A 605 GLU ILE ASP ALA GLY PRO THR ASN ASN TRP MET ASP PRO SEQRES 9 A 605 GLY GLU MET ARG SER ILE MET LYS ASP LEU TYR ARG GLY SEQRES 10 A 605 CYS MET ARG GLY ARG THR MET TYR VAL VAL PRO PHE CYS SEQRES 11 A 605 MET GLY PRO LEU GLY ALA GLU ASP PRO LYS LEU GLY VAL SEQRES 12 A 605 GLU ILE THR ASP SER GLU TYR VAL VAL VAL SER MET ARG SEQRES 13 A 605 THR MET THR ARG MET GLY LYS ALA ALA LEU GLU LYS MET SEQRES 14 A 605 GLY ASP ASP GLY PHE PHE VAL LYS ALA LEU HIS SER VAL SEQRES 15 A 605 GLY ALA PRO LEU GLU PRO GLY GLN LYS ASP VAL ALA TRP SEQRES 16 A 605 PRO CYS SER GLU THR LYS TYR ILE THR HIS PHE PRO GLU SEQRES 17 A 605 THR ARG GLU ILE TRP SER TYR GLY SER GLY TYR GLY GLY SEQRES 18 A 605 ASN ALA LEU LEU GLY LYS LYS CYS TYR SER LEU ARG ILE SEQRES 19 A 605 ALA SER ALA MET ALA HIS ASP GLU GLY TRP LEU ALA GLU SEQRES 20 A 605 HIS MET LEU ILE LEU LYS LEU ILE SER PRO GLU ASN LYS SEQRES 21 A 605 ALA TYR TYR PHE ALA ALA ALA PHE PRO SER ALA SER GLY SEQRES 22 A 605 LYS THR ASN LEU ALA MET LEU GLN PRO THR ILE PRO GLY SEQRES 23 A 605 TRP ARG ALA GLU THR LEU GLY ASP ASP ILE ALA TRP MET SEQRES 24 A 605 ARG PHE GLY LYS ASP GLY ARG LEU TYR ALA VAL ASN PRO SEQRES 25 A 605 GLU PHE GLY PHE PHE GLY VAL ALA PRO GLY THR ASN TRP SEQRES 26 A 605 LYS SER ASN PRO ASN ALA MET ARG THR ILE ALA ALA GLY SEQRES 27 A 605 ASN THR VAL PHE THR ASN VAL ALA LEU THR ASP ASP GLY SEQRES 28 A 605 ASP VAL TRP TRP GLU GLY LEU GLU GLY ASP PRO GLN HIS SEQRES 29 A 605 LEU ILE ASP TRP LYS GLY ASN ASP TRP TYR PHE ARG GLU SEQRES 30 A 605 THR GLU THR ASN ALA ALA HIS PRO ASN SER ARG TYR CYS SEQRES 31 A 605 THR PRO MET SER GLN CYS PRO ILE LEU ALA PRO GLU TRP SEQRES 32 A 605 ASP ASP PRO GLN GLY VAL PRO ILE SER GLY ILE LEU PHE SEQRES 33 A 605 GLY GLY ARG ARG LYS THR THR VAL PRO LEU VAL THR GLU SEQRES 34 A 605 ALA ARG ASP TRP GLN HIS GLY VAL PHE ILE GLY ALA THR SEQRES 35 A 605 LEU GLY SER GLU GLN THR ALA ALA ALA GLU GLY LYS VAL SEQRES 36 A 605 GLY ASN VAL ARG ARG ASP PRO MET ALA MET LEU PRO PHE SEQRES 37 A 605 LEU GLY TYR ASN VAL GLY ASP TYR PHE GLN HIS TRP ILE SEQRES 38 A 605 ASN LEU GLY LYS HIS ALA ASP GLU SER LYS LEU PRO LYS SEQRES 39 A 605 VAL PHE PHE VAL ASN TRP PHE ARG ARG GLY ASP ASP GLY SEQRES 40 A 605 ARG PHE LEU TRP PRO GLY PHE GLY GLU ASN SER ARG VAL SEQRES 41 A 605 LEU LYS TRP ILE VAL ASP ARG ILE GLU HIS LYS ALA GLY SEQRES 42 A 605 GLY ALA THR THR PRO ILE GLY THR VAL PRO ALA VAL GLU SEQRES 43 A 605 ASP LEU ASP LEU ASP GLY LEU ASP VAL ASP ALA ALA ASP SEQRES 44 A 605 VAL ALA ALA ALA LEU ALA VAL ASP ALA ASP GLU TRP ARG SEQRES 45 A 605 GLN GLU LEU PRO LEU ILE GLU GLU TRP LEU GLN PHE VAL SEQRES 46 A 605 GLY GLU LYS LEU PRO THR GLY VAL LYS ASP GLU PHE ASP SEQRES 47 A 605 ALA LEU LYS GLU ARG LEU GLY HET GDP A 701 28 HET PEG A 702 7 HET PEG A 703 7 HET PEG A 704 7 HET MN A 705 1 HET MN A 706 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MN MANGANESE (II) ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 PEG 3(C4 H10 O3) FORMUL 6 MN 2(MN 2+) FORMUL 8 HOH *54(H2 O) HELIX 1 AA1 HIS A 16 GLN A 31 1 16 HELIX 2 AA2 SER A 41 ALA A 55 1 15 HELIX 3 AA3 VAL A 82 SER A 84 5 3 HELIX 4 AA4 LYS A 92 ALA A 96 5 5 HELIX 5 AA5 ASP A 104 ARG A 117 1 14 HELIX 6 AA6 SER A 149 THR A 160 1 12 HELIX 7 AA7 GLY A 163 GLY A 171 1 9 HELIX 8 AA8 TYR A 220 ALA A 224 5 5 HELIX 9 AA9 LEU A 233 GLY A 244 1 12 HELIX 10 AB1 GLY A 274 MET A 280 1 7 HELIX 11 AB2 ASN A 328 ALA A 337 1 10 HELIX 12 AB3 SER A 394 CYS A 396 5 3 HELIX 13 AB4 ALA A 400 ASP A 405 5 6 HELIX 14 AB5 ASP A 432 THR A 442 1 11 HELIX 15 AB6 PRO A 462 MET A 465 5 4 HELIX 16 AB7 ASN A 472 HIS A 486 1 15 HELIX 17 AB8 GLY A 513 GLU A 516 5 4 HELIX 18 AB9 ASN A 517 GLU A 529 1 13 HELIX 19 AC1 ALA A 544 LEU A 548 5 5 HELIX 20 AC2 ASP A 556 LEU A 564 1 9 HELIX 21 AC3 ASP A 567 GLY A 586 1 20 HELIX 22 AC4 GLU A 587 LEU A 589 5 3 HELIX 23 AC5 PRO A 590 GLY A 605 1 16 SHEET 1 AA1 7 ARG A 34 PHE A 37 0 SHEET 2 AA1 7 THR A 124 MET A 132 1 O MET A 125 N ARG A 34 SHEET 3 AA1 7 LYS A 141 THR A 147 -1 O THR A 147 N TYR A 126 SHEET 4 AA1 7 VAL A 177 SER A 182 1 O ALA A 179 N VAL A 144 SHEET 5 AA1 7 GLU A 212 TYR A 216 1 O SER A 215 N LEU A 180 SHEET 6 AA1 7 TYR A 203 PHE A 207 -1 N PHE A 207 O GLU A 212 SHEET 7 AA1 7 THR A 86 ILE A 88 1 N TYR A 87 O ILE A 204 SHEET 1 AA2 3 ARG A 34 PHE A 37 0 SHEET 2 AA2 3 THR A 124 MET A 132 1 O MET A 125 N ARG A 34 SHEET 3 AA2 3 ARG A 161 MET A 162 -1 O ARG A 161 N CYS A 131 SHEET 1 AA3 5 PHE A 58 ARG A 60 0 SHEET 2 AA3 5 TYR A 70 ALA A 72 -1 O LEU A 71 N ILE A 59 SHEET 3 AA3 5 VAL A 341 THR A 343 1 O PHE A 342 N TYR A 70 SHEET 4 AA3 5 ARG A 388 PRO A 392 -1 O ARG A 388 N THR A 343 SHEET 5 AA3 5 GLY A 315 VAL A 319 -1 N PHE A 316 O THR A 391 SHEET 1 AA4 7 LEU A 246 GLU A 248 0 SHEET 2 AA4 7 ALA A 298 PHE A 302 -1 O ALA A 298 N GLU A 248 SHEET 3 AA4 7 LEU A 307 VAL A 310 -1 O TYR A 308 N ARG A 301 SHEET 4 AA4 7 VAL A 409 GLY A 417 -1 O ILE A 411 N LEU A 307 SHEET 5 AA4 7 ALA A 262 ALA A 268 1 N ALA A 268 O LEU A 415 SHEET 6 AA4 7 LEU A 251 ILE A 256 -1 N LEU A 255 O TYR A 263 SHEET 7 AA4 7 ARG A 289 ASP A 295 -1 O ARG A 289 N ILE A 256 SHEET 1 AA5 6 LEU A 246 GLU A 248 0 SHEET 2 AA5 6 ALA A 298 PHE A 302 -1 O ALA A 298 N GLU A 248 SHEET 3 AA5 6 LEU A 307 VAL A 310 -1 O TYR A 308 N ARG A 301 SHEET 4 AA5 6 VAL A 409 GLY A 417 -1 O ILE A 411 N LEU A 307 SHEET 5 AA5 6 LYS A 494 VAL A 498 1 O PHE A 496 N ILE A 414 SHEET 6 AA5 6 VAL A 427 GLU A 429 -1 N THR A 428 O PHE A 497 SHEET 1 AA6 4 VAL A 353 TRP A 354 0 SHEET 2 AA6 4 ALA A 346 THR A 348 -1 N ALA A 346 O TRP A 354 SHEET 3 AA6 4 HIS A 364 ILE A 366 -1 O ILE A 366 N LEU A 347 SHEET 4 AA6 4 ASP A 372 TYR A 374 -1 O TRP A 373 N LEU A 365 SHEET 1 AA7 2 GLY A 444 SER A 445 0 SHEET 2 AA7 2 ARG A 459 ARG A 460 -1 O ARG A 459 N SER A 445 SHEET 1 AA8 2 ALA A 535 THR A 537 0 SHEET 2 AA8 2 GLY A 540 VAL A 542 -1 O VAL A 542 N ALA A 535 LINK OG1 THR A 276 MN MN A 706 1555 1555 2.20 LINK O1B GDP A 701 MN MN A 706 1555 1555 2.12 LINK MN MN A 705 O HOH A 835 1555 1555 2.63 LINK MN MN A 706 O HOH A 815 1555 1555 2.25 LINK MN MN A 706 O HOH A 821 1555 1555 2.33 LINK MN MN A 706 O HOH A 834 1555 1555 2.33 SITE 1 AC1 19 PRO A 270 SER A 271 ALA A 272 GLY A 274 SITE 2 AC1 19 LYS A 275 THR A 276 ASN A 277 ASP A 361 SITE 3 AC1 19 PHE A 375 ARG A 376 TRP A 500 PHE A 501 SITE 4 AC1 19 PHE A 509 GLY A 513 PHE A 514 ASN A 517 SITE 5 AC1 19 MN A 706 HOH A 821 HOH A 826 SITE 1 AC2 4 ARG A 301 TYR A 308 VAL A 310 GLN A 407 SITE 1 AC3 3 ARG A 157 THR A 158 ASN A 339 SITE 1 AC4 5 PRO A 283 THR A 284 ILE A 285 GLY A 287 SITE 2 AC4 5 TRP A 288 SITE 1 AC5 4 LYS A 229 HIS A 249 ASP A 296 HOH A 835 SITE 1 AC6 5 THR A 276 GDP A 701 HOH A 815 HOH A 821 SITE 2 AC6 5 HOH A 834 CRYST1 103.721 124.598 121.302 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008244 0.00000