HEADER RNA BINDING PROTEIN/RNA 20-FEB-16 5I9G TITLE CRYSTAL STRUCTURE OF DESIGNED PENTATRICOPEPTIDE REPEAT PROTEIN DPPR- TITLE 2 U8C2 IN COMPLEX WITH ITS TARGET RNA U8C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENTATRICOPEPTIDE REPEAT PROTEIN DPPR-U8C2; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'- COMPND 7 R(*GP*GP*G*GP*UP*UP*UP*UP*CP*CP*UP*UP*UP*UP*CP*CP*CP*C)-3'); COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS SINGLE-STRANDED RNA, DESIGNER PENTATRICOPEPTIDE REPEAT PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.SHEN,D.ZHANG,Z.GUAN,T.ZOU,P.YIN REVDAT 4 20-MAR-24 5I9G 1 REMARK REVDAT 3 25-DEC-19 5I9G 1 JRNL REVDAT 2 04-OCT-17 5I9G 1 REMARK REVDAT 1 27-APR-16 5I9G 0 JRNL AUTH C.SHEN,D.ZHANG,Z.GUAN,Y.LIU,Z.YANG,Y.YANG,X.WANG,Q.WANG, JRNL AUTH 2 Q.ZHANG,S.FAN,T.ZOU,P.YIN JRNL TITL STRUCTURAL BASIS FOR SPECIFIC SINGLE-STRANDED RNA JRNL TITL 2 RECOGNITION BY DESIGNER PENTATRICOPEPTIDE REPEAT PROTEINS. JRNL REF NAT COMMUN V. 7 11285 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27088764 JRNL DOI 10.1038/NCOMMS11285 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 18753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6735 - 4.1570 1.00 3217 145 0.2358 0.2557 REMARK 3 2 4.1570 - 3.3001 1.00 3081 143 0.2075 0.2285 REMARK 3 3 3.3001 - 2.8831 1.00 3006 170 0.2176 0.2151 REMARK 3 4 2.8831 - 2.6195 1.00 3009 160 0.2255 0.2724 REMARK 3 5 2.6195 - 2.4318 0.99 2959 162 0.2325 0.2764 REMARK 3 6 2.4318 - 2.2885 0.86 2572 129 0.2425 0.2994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3119 REMARK 3 ANGLE : 1.802 4241 REMARK 3 CHIRALITY : 0.113 521 REMARK 3 PLANARITY : 0.008 497 REMARK 3 DIHEDRAL : 17.075 1229 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -10.1903 0.4237 18.0266 REMARK 3 T TENSOR REMARK 3 T11: 0.3111 T22: 0.2865 REMARK 3 T33: 0.3422 T12: 0.0240 REMARK 3 T13: 0.0093 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.0653 L22: 0.4820 REMARK 3 L33: 1.8478 L12: -0.0268 REMARK 3 L13: 0.1578 L23: -0.8242 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: -0.0691 S13: -0.0284 REMARK 3 S21: 0.0629 S22: -0.0105 S23: -0.0364 REMARK 3 S31: -0.0710 S32: 0.1576 S33: 0.0489 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9806 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, BIS-TRIS PROPANE, MAGNESIUM REMARK 280 CHLORIDE, ETHYL ACETATE, D-(+)-GLUCOSE MONOHYDRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.71650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.17900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.39100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.17900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.71650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.39100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA C 1 REMARK 465 LEU C 2 REMARK 465 LEU C 3 REMARK 465 ASP C 4 REMARK 465 GLU C 5 REMARK 465 THR C 6 REMARK 465 PRO C 7 REMARK 465 LEU C 8 REMARK 465 PRO C 9 REMARK 465 PRO C 10 REMARK 465 GLY C 11 REMARK 465 SER C 12 REMARK 465 ARG C 13 REMARK 465 LEU C 14 REMARK 465 ASP C 15 REMARK 465 VAL C 16 REMARK 465 ARG C 17 REMARK 465 ALA C 18 REMARK 465 TYR C 19 REMARK 465 THR C 20 REMARK 465 THR C 21 REMARK 465 VAL C 22 REMARK 465 LEU C 23 REMARK 465 HIS C 24 REMARK 465 ALA C 25 REMARK 465 LEU C 26 REMARK 465 SER C 27 REMARK 465 ARG C 28 REMARK 465 ALA C 29 REMARK 465 GLY C 30 REMARK 465 ARG C 31 REMARK 465 TYR C 32 REMARK 465 GLU C 33 REMARK 465 ARG C 34 REMARK 465 ALA C 35 REMARK 465 TYR C 411 REMARK 465 CYS C 412 REMARK 465 ARG C 413 REMARK 465 ALA C 414 REMARK 465 LYS C 415 REMARK 465 ARG C 416 REMARK 465 PHE C 417 REMARK 465 GLU C 418 REMARK 465 GLU C 419 REMARK 465 ALA C 420 REMARK 465 ARG C 421 REMARK 465 GLY C 422 REMARK 465 PHE C 423 REMARK 465 LEU C 424 REMARK 465 SER C 425 REMARK 465 GLU C 426 REMARK 465 VAL C 427 REMARK 465 SER C 428 REMARK 465 GLU C 429 REMARK 465 THR C 430 REMARK 465 ASP C 431 REMARK 465 LEU C 432 REMARK 465 ASP C 433 REMARK 465 PHE C 434 REMARK 465 ASP C 435 REMARK 465 LYS C 436 REMARK 465 LYS C 437 REMARK 465 ALA C 438 REMARK 465 LEU C 439 REMARK 465 GLU C 440 REMARK 465 ALA C 441 REMARK 465 TYR C 442 REMARK 465 ILE C 443 REMARK 465 GLU C 444 REMARK 465 ASP C 445 REMARK 465 ALA C 446 REMARK 465 GLN C 447 REMARK 465 PHE C 448 REMARK 465 GLY C 449 REMARK 465 ARG C 450 REMARK 465 LEU C 451 REMARK 465 GLU C 452 REMARK 465 HIS C 453 REMARK 465 HIS C 454 REMARK 465 HIS C 455 REMARK 465 HIS C 456 REMARK 465 HIS C 457 REMARK 465 HIS C 458 REMARK 465 HIS C 459 REMARK 465 HIS C 460 REMARK 465 G A -8 REMARK 465 G A -7 REMARK 465 G A -6 REMARK 465 C A 7 REMARK 465 C A 8 REMARK 465 C A 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU C 36 CG CD1 CD2 REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 GLU C 215 CG CD OE1 OE2 REMARK 470 GLU C 219 CG CD OE1 OE2 REMARK 470 GLU C 250 CG CD OE1 OE2 REMARK 470 GLU C 254 CG CD OE1 OE2 REMARK 470 VAL C 261 CG1 CG2 REMARK 470 ASN C 265 CG OD1 ND2 REMARK 470 GLU C 320 CG CD OE1 OE2 REMARK 470 LYS C 363 CG CD CE NZ REMARK 470 LYS C 398 CG CD CE NZ REMARK 470 VAL C 408 CG1 CG2 REMARK 470 G A -5 P OP1 OP2 O5' C5' C2' O2' REMARK 470 G A -5 C1' N9 C8 N7 C5 C6 O6 REMARK 470 G A -5 N1 C2 N2 N3 C4 REMARK 470 C A 6 C5' C4' O4' C3' O3' C2' O2' REMARK 470 C A 6 C1' N1 C2 O2 N3 C4 N4 REMARK 470 C A 6 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET C 77 O HOH C 546 1.82 REMARK 500 OD2 ASP C 85 O HOH C 501 1.83 REMARK 500 SD MET C 357 O HOH C 544 1.86 REMARK 500 SD MET C 112 O HOH C 541 1.91 REMARK 500 OH TYR C 369 O HOH C 502 1.93 REMARK 500 O LYS C 83 O HOH C 503 1.99 REMARK 500 OE2 GLU C 391 O HOH C 502 2.10 REMARK 500 OE1 GLU C 321 O HOH C 504 2.10 REMARK 500 OD2 ASP C 365 O HOH C 505 2.12 REMARK 500 O HOH C 509 O HOH C 537 2.14 REMARK 500 O HOH C 516 O HOH C 536 2.15 REMARK 500 O LYS C 188 O HOH C 506 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U A -3 O3' U A -2 P -0.073 REMARK 500 U A 5 O3' C A 6 P 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 155 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU C 382 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 50 153.11 -49.45 REMARK 500 ASP C 85 -168.72 -108.74 REMARK 500 LYS C 101 61.59 -111.77 REMARK 500 ASP C 190 -161.57 -104.13 REMARK 500 LYS C 206 46.51 -93.58 REMARK 500 LYS C 241 51.62 -98.48 REMARK 500 ASP C 330 -169.02 -110.10 REMARK 500 ASP C 365 -161.09 -123.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 551 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH C 552 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH C 553 DISTANCE = 7.41 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5I9D RELATED DB: PDB REMARK 900 RELATED ID: 5I9F RELATED DB: PDB REMARK 900 RELATED ID: 5I9H RELATED DB: PDB DBREF 5I9G C 1 460 PDB 5I9G 5I9G 1 460 DBREF 5I9G A -8 9 PDB 5I9G 5I9G -8 9 SEQRES 1 C 460 ALA LEU LEU ASP GLU THR PRO LEU PRO PRO GLY SER ARG SEQRES 2 C 460 LEU ASP VAL ARG ALA TYR THR THR VAL LEU HIS ALA LEU SEQRES 3 C 460 SER ARG ALA GLY ARG TYR GLU ARG ALA LEU GLU LEU PHE SEQRES 4 C 460 ALA GLU LEU ARG ARG GLN GLY VAL ALA PRO THR VAL VAL SEQRES 5 C 460 THR TYR ASN THR LEU ILE ASP GLY LEU CYS LYS ALA GLY SEQRES 6 C 460 LYS LEU ASP GLU ALA LEU LYS LEU PHE GLU GLU MET VAL SEQRES 7 C 460 GLU LYS GLY ILE LYS PRO ASP VAL VAL THR TYR ASN THR SEQRES 8 C 460 LEU ILE ASP GLY LEU CYS LYS ALA GLY LYS LEU ASP GLU SEQRES 9 C 460 ALA LEU LYS LEU PHE GLU GLU MET VAL GLU LYS GLY ILE SEQRES 10 C 460 LYS PRO ASP VAL VAL THR TYR ASN THR LEU ILE ASP GLY SEQRES 11 C 460 LEU CYS LYS ALA GLY LYS LEU ASP GLU ALA LEU LYS LEU SEQRES 12 C 460 PHE GLU GLU MET VAL GLU LYS GLY ILE LYS PRO ASP VAL SEQRES 13 C 460 VAL THR TYR ASN THR LEU ILE ASP GLY LEU CYS LYS ALA SEQRES 14 C 460 GLY LYS LEU ASP GLU ALA LEU LYS LEU PHE GLU GLU MET SEQRES 15 C 460 VAL GLU LYS GLY ILE LYS PRO ASP VAL VAL THR TYR ASN SEQRES 16 C 460 THR LEU ILE ASP GLY LEU CYS LYS ALA GLY LYS LEU ASP SEQRES 17 C 460 GLU ALA LEU LYS LEU PHE GLU GLU MET VAL GLU LYS GLY SEQRES 18 C 460 ILE LYS PRO SER VAL VAL THR TYR ASN THR LEU ILE ASP SEQRES 19 C 460 GLY LEU CYS LYS ALA GLY LYS LEU ASP GLU ALA LEU LYS SEQRES 20 C 460 LEU PHE GLU GLU MET VAL GLU LYS GLY ILE LYS PRO SER SEQRES 21 C 460 VAL VAL THR TYR ASN THR LEU ILE ASP GLY LEU CYS LYS SEQRES 22 C 460 ALA GLY LYS LEU ASP GLU ALA LEU LYS LEU PHE GLU GLU SEQRES 23 C 460 MET VAL GLU LYS GLY ILE LYS PRO ASP VAL VAL THR TYR SEQRES 24 C 460 ASN THR LEU ILE ASP GLY LEU CYS LYS ALA GLY LYS LEU SEQRES 25 C 460 ASP GLU ALA LEU LYS LEU PHE GLU GLU MET VAL GLU LYS SEQRES 26 C 460 GLY ILE LYS PRO ASP VAL VAL THR TYR ASN THR LEU ILE SEQRES 27 C 460 ASP GLY LEU CYS LYS ALA GLY LYS LEU ASP GLU ALA LEU SEQRES 28 C 460 LYS LEU PHE GLU GLU MET VAL GLU LYS GLY ILE LYS PRO SEQRES 29 C 460 ASP VAL VAL THR TYR ASN THR LEU ILE ASP GLY LEU CYS SEQRES 30 C 460 LYS ALA GLY LYS LEU ASP GLU ALA LEU LYS LEU PHE GLU SEQRES 31 C 460 GLU MET VAL GLU LYS GLY ILE LYS PRO ASP GLU LEU THR SEQRES 32 C 460 TYR ARG ARG VAL VAL GLU SER TYR CYS ARG ALA LYS ARG SEQRES 33 C 460 PHE GLU GLU ALA ARG GLY PHE LEU SER GLU VAL SER GLU SEQRES 34 C 460 THR ASP LEU ASP PHE ASP LYS LYS ALA LEU GLU ALA TYR SEQRES 35 C 460 ILE GLU ASP ALA GLN PHE GLY ARG LEU GLU HIS HIS HIS SEQRES 36 C 460 HIS HIS HIS HIS HIS SEQRES 1 A 18 G G G G U U U U C C U U U SEQRES 2 A 18 U C C C C FORMUL 3 HOH *67(H2 O) HELIX 1 AA1 LEU C 36 ARG C 44 1 9 HELIX 2 AA2 THR C 50 GLY C 65 1 16 HELIX 3 AA3 LYS C 66 LYS C 80 1 15 HELIX 4 AA4 ASP C 85 ALA C 99 1 15 HELIX 5 AA5 LYS C 101 LYS C 115 1 15 HELIX 6 AA6 ASP C 120 ALA C 134 1 15 HELIX 7 AA7 LYS C 136 LYS C 150 1 15 HELIX 8 AA8 ASP C 155 LYS C 168 1 14 HELIX 9 AA9 LYS C 171 LYS C 185 1 15 HELIX 10 AB1 ASP C 190 ALA C 204 1 15 HELIX 11 AB2 LYS C 206 GLU C 219 1 14 HELIX 12 AB3 SER C 225 ALA C 239 1 15 HELIX 13 AB4 LYS C 241 LYS C 255 1 15 HELIX 14 AB5 SER C 260 GLY C 275 1 16 HELIX 15 AB6 LYS C 276 LYS C 290 1 15 HELIX 16 AB7 ASP C 295 GLY C 310 1 16 HELIX 17 AB8 LYS C 311 LYS C 325 1 15 HELIX 18 AB9 ASP C 330 GLY C 345 1 16 HELIX 19 AC1 LYS C 346 LYS C 360 1 15 HELIX 20 AC2 ASP C 365 GLY C 380 1 16 HELIX 21 AC3 LYS C 381 LYS C 395 1 15 HELIX 22 AC4 ASP C 400 ARG C 406 1 7 CRYST1 51.433 84.782 94.358 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010598 0.00000