HEADER IMMUNE SYSTEM 22-FEB-16 5IB5 TITLE CRYSTAL STRUCTURE OF HLA-B*27:09 COMPLEXED WITH THE SELF-PEPTIDE PVIPR TITLE 2 AND COPPER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-27 ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: MHC CLASS I ANTIGEN B*27; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR 1; COMPND 12 CHAIN: C, F; COMPND 13 FRAGMENT: UNP RESIDUES 400-408; COMPND 14 SYNONYM: VIP-R-1,PITUITARY ADENYLATE CYCLASE-ACTIVATING POLYPEPTIDE COMPND 15 TYPE II RECEPTOR,PACAP-R2,VPAC1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-B, HLAB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHN1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PHN1; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606 KEYWDS IMMUNE SYSTEM-COMPLEX, IMMUNE SYSTEM, MHC MAJOR HISTOCOMPATIBILITY KEYWDS 2 COMPLEX), HLA- B*2709 EXPDTA X-RAY DIFFRACTION AUTHOR R.JANKE,M.BALLASCHK,P.SCHMIEDER,B.UCHANSKA-ZIEGLER,A.ZIEGLER,B.LOLL REVDAT 4 23-OCT-24 5IB5 1 REMARK REVDAT 3 10-JAN-24 5IB5 1 LINK REVDAT 2 24-JUL-19 5IB5 1 JRNL REVDAT 1 01-FEB-17 5IB5 0 JRNL AUTH R.DRILLER,M.BALLASCHK,P.SCHMIEDER,B.UCHANSKA-ZIEGLER, JRNL AUTH 2 A.ZIEGLER,B.LOLL JRNL TITL METAL-TRIGGERED CONFORMATIONAL REORIENTATION OF A JRNL TITL 2 SELF-PEPTIDE BOUND TO A DISEASE-ASSOCIATED HLA-B*27 SUBTYPE. JRNL REF J.BIOL.CHEM. 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31296658 JRNL DOI 10.1074/JBC.RA119.008937 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: 000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 66168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0524 - 7.1645 0.96 2701 136 0.2149 0.2200 REMARK 3 2 7.1645 - 5.6908 0.96 2698 138 0.2227 0.2376 REMARK 3 3 5.6908 - 4.9727 0.95 2719 145 0.1851 0.2354 REMARK 3 4 4.9727 - 4.5186 0.95 2655 140 0.1759 0.2304 REMARK 3 5 4.5186 - 4.1950 0.94 2663 143 0.1805 0.2380 REMARK 3 6 4.1950 - 3.9478 0.94 2630 139 0.1919 0.2449 REMARK 3 7 3.9478 - 3.7502 0.94 2675 141 0.1910 0.2530 REMARK 3 8 3.7502 - 3.5871 0.94 2634 135 0.1906 0.2507 REMARK 3 9 3.5871 - 3.4490 0.94 2623 143 0.2098 0.2985 REMARK 3 10 3.4490 - 3.3301 0.93 2628 138 0.2074 0.2957 REMARK 3 11 3.3301 - 3.2260 0.94 2675 142 0.2147 0.2592 REMARK 3 12 3.2260 - 3.1338 0.93 2598 137 0.2153 0.2821 REMARK 3 13 3.1338 - 3.0513 0.93 2647 143 0.2144 0.2660 REMARK 3 14 3.0513 - 2.9769 0.93 2599 137 0.2055 0.2476 REMARK 3 15 2.9769 - 2.9092 0.93 2611 139 0.2196 0.3331 REMARK 3 16 2.9092 - 2.8473 0.93 2574 138 0.2358 0.3559 REMARK 3 17 2.8473 - 2.7904 0.92 2628 139 0.2500 0.2747 REMARK 3 18 2.7904 - 2.7377 0.92 2618 137 0.2450 0.2826 REMARK 3 19 2.7377 - 2.6889 0.92 2556 137 0.2601 0.3321 REMARK 3 20 2.6889 - 2.6433 0.92 2633 139 0.2743 0.3554 REMARK 3 21 2.6433 - 2.6006 0.91 2557 131 0.2879 0.3903 REMARK 3 22 2.6006 - 2.5606 0.92 2569 137 0.2858 0.4016 REMARK 3 23 2.5606 - 2.5230 0.90 2547 136 0.2926 0.3704 REMARK 3 24 2.5230 - 2.4875 0.85 2414 126 0.3004 0.3843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6636 REMARK 3 ANGLE : 0.988 8997 REMARK 3 CHIRALITY : 0.052 912 REMARK 3 PLANARITY : 0.007 1184 REMARK 3 DIHEDRAL : 15.753 3960 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66171 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 1.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OF2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HCL, 16% (W/V) PEG 8000, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.83850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS C 8 O HOH C 201 2.03 REMARK 500 OD1 ASP D 106 O HOH D 401 2.09 REMARK 500 OE2 GLU A 76 O HOH A 401 2.13 REMARK 500 NE2 HIS D 192 O HOH D 402 2.15 REMARK 500 OE1 GLN A 180 O HOH A 402 2.17 REMARK 500 OD2 ASP D 102 O HOH D 403 2.17 REMARK 500 O GLY D 91 O HOH D 404 2.19 REMARK 500 OE2 GLU D 19 O HOH D 405 2.19 REMARK 500 NH2 ARG D 62 O HOH D 406 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -119.57 58.21 REMARK 500 ARG A 111 142.54 -173.32 REMARK 500 HIS A 114 87.09 -171.39 REMARK 500 TYR A 123 -80.18 -113.97 REMARK 500 SER A 131 -7.84 -149.35 REMARK 500 PRO A 210 -162.96 -70.21 REMARK 500 GLN A 224 45.36 -93.39 REMARK 500 ARG A 239 -23.17 96.74 REMARK 500 TRP B 60 -5.25 81.51 REMARK 500 ASP D 29 -120.70 59.10 REMARK 500 ARG D 111 142.27 -171.32 REMARK 500 HIS D 114 89.27 -170.99 REMARK 500 TYR D 123 -76.89 -119.15 REMARK 500 SER D 131 -10.85 -149.45 REMARK 500 PRO D 210 -160.04 -68.24 REMARK 500 GLN D 224 43.52 -99.83 REMARK 500 ARG D 239 -6.35 77.66 REMARK 500 PRO E 32 -158.71 -84.36 REMARK 500 TRP E 60 -5.93 81.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 1 N REMARK 620 2 HIS A 3 NE2 103.7 REMARK 620 3 HOH A 402 O 85.4 95.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 76 OE2 REMARK 620 2 HOH A 401 O 64.5 REMARK 620 3 HIS C 8 NE2 91.9 155.4 REMARK 620 4 HOH C 201 O 113.1 119.7 61.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 191 NE2 REMARK 620 2 GLU A 254 OE2 101.1 REMARK 620 3 GLU E 44 OE2 102.1 141.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY D 1 N REMARK 620 2 HIS D 3 NE2 135.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU E 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 402 O REMARK 620 2 ASP E 96 OD1 159.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU F 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 8 NE2 REMARK 620 2 HOH F 202 O 88.0 REMARK 620 3 HOH F 207 O 158.8 105.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL F 102 DBREF 5IB5 A 1 276 UNP P03989 1B27_HUMAN 25 300 DBREF 5IB5 B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 5IB5 C 1 9 UNP P32241 VIPR1_HUMAN 400 408 DBREF 5IB5 D 1 276 UNP P03989 1B27_HUMAN 25 300 DBREF 5IB5 E 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 5IB5 F 1 9 UNP P32241 VIPR1_HUMAN 400 408 SEQADV 5IB5 HIS A 116 UNP P03989 ASP 140 VARIANT SEQADV 5IB5 MET B 0 UNP P61769 INITIATING METHIONINE SEQADV 5IB5 HIS D 116 UNP P03989 ASP 140 VARIANT SEQADV 5IB5 MET E 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 276 GLY SER HIS SER MET ARG TYR PHE HIS THR SER VAL SER SEQRES 2 A 276 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE THR VAL GLY SEQRES 3 A 276 TYR VAL ASP ASP THR LEU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA ALA SER PRO ARG GLU GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG GLU THR GLN SEQRES 6 A 276 ILE CYS LYS ALA LYS ALA GLN THR ASP ARG GLU ASP LEU SEQRES 7 A 276 ARG THR LEU LEU ARG TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 276 SER HIS THR LEU GLN ASN MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 276 PRO ASP GLY ARG LEU LEU ARG GLY TYR HIS GLN HIS ALA SEQRES 10 A 276 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 A 276 GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN LEU SEQRES 13 A 276 ARG ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU ARG SEQRES 14 A 276 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG ALA SEQRES 15 A 276 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 A 276 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 276 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 276 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 276 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 ARG ARG LYS TRP ARG ARG TRP HIS LEU SEQRES 1 D 276 GLY SER HIS SER MET ARG TYR PHE HIS THR SER VAL SER SEQRES 2 D 276 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE THR VAL GLY SEQRES 3 D 276 TYR VAL ASP ASP THR LEU PHE VAL ARG PHE ASP SER ASP SEQRES 4 D 276 ALA ALA SER PRO ARG GLU GLU PRO ARG ALA PRO TRP ILE SEQRES 5 D 276 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG GLU THR GLN SEQRES 6 D 276 ILE CYS LYS ALA LYS ALA GLN THR ASP ARG GLU ASP LEU SEQRES 7 D 276 ARG THR LEU LEU ARG TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 D 276 SER HIS THR LEU GLN ASN MET TYR GLY CYS ASP VAL GLY SEQRES 9 D 276 PRO ASP GLY ARG LEU LEU ARG GLY TYR HIS GLN HIS ALA SEQRES 10 D 276 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 D 276 SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 D 276 GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN LEU SEQRES 13 D 276 ARG ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU ARG SEQRES 14 D 276 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG ALA SEQRES 15 D 276 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 D 276 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 D 276 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 D 276 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 D 276 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 D 276 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 D 276 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 D 276 TRP GLU PRO SEQRES 1 E 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 E 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 E 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 E 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 E 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 E 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 E 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 E 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 F 9 ARG ARG LYS TRP ARG ARG TRP HIS LEU HET CU A 301 1 HET CU A 302 1 HET CU C 101 1 HET CU D 301 1 HET GOL D 302 6 HET CU E 101 1 HET CU F 101 1 HET CL F 102 1 HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 CU 6(CU 2+) FORMUL 11 GOL C3 H8 O3 FORMUL 14 CL CL 1- FORMUL 15 HOH *195(H2 O) HELIX 1 AA1 ALA A 49 GLN A 54 1 6 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 149 1 13 HELIX 4 AA4 ARG A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLY A 252 GLN A 255 5 4 HELIX 8 AA8 ALA D 49 GLN D 54 1 6 HELIX 9 AA9 GLY D 56 TYR D 85 1 30 HELIX 10 AB1 ASP D 137 ARG D 151 1 15 HELIX 11 AB2 ARG D 151 GLY D 162 1 12 HELIX 12 AB3 GLY D 162 GLY D 175 1 14 HELIX 13 AB4 GLY D 175 GLN D 180 1 6 HELIX 14 AB5 GLU D 253 GLN D 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N THR A 24 O PHE A 36 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O ILE A 124 N HIS A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O THR A 258 N GLN A 218 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 270 N VAL A 261 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O LEU B 64 N VAL B 27 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O LEU B 64 N VAL B 27 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA8 8 GLU D 46 PRO D 47 0 SHEET 2 AA8 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 AA8 8 ARG D 21 VAL D 28 -1 N GLY D 26 O PHE D 33 SHEET 4 AA8 8 HIS D 3 VAL D 12 -1 N PHE D 8 O VAL D 25 SHEET 5 AA8 8 THR D 94 VAL D 103 -1 O TYR D 99 N TYR D 7 SHEET 6 AA8 8 LEU D 109 TYR D 118 -1 O LEU D 110 N ASP D 102 SHEET 7 AA8 8 LYS D 121 LEU D 126 -1 O ILE D 124 N HIS D 116 SHEET 8 AA8 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 AA9 4 LYS D 186 PRO D 193 0 SHEET 2 AA9 4 GLU D 198 PHE D 208 -1 O THR D 200 N HIS D 192 SHEET 3 AA9 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 AA9 4 THR D 228 LEU D 230 -1 N GLU D 229 O ALA D 246 SHEET 1 AB1 4 LYS D 186 PRO D 193 0 SHEET 2 AB1 4 GLU D 198 PHE D 208 -1 O THR D 200 N HIS D 192 SHEET 3 AB1 4 PHE D 241 PRO D 250 -1 O ALA D 245 N CYS D 203 SHEET 4 AB1 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 AB2 4 GLU D 222 ASP D 223 0 SHEET 2 AB2 4 THR D 214 ARG D 219 -1 N ARG D 219 O GLU D 222 SHEET 3 AB2 4 TYR D 257 GLN D 262 -1 O THR D 258 N GLN D 218 SHEET 4 AB2 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 AB3 4 LYS E 6 SER E 11 0 SHEET 2 AB3 4 ASN E 21 PHE E 30 -1 O SER E 28 N LYS E 6 SHEET 3 AB3 4 PHE E 62 PHE E 70 -1 O LEU E 64 N VAL E 27 SHEET 4 AB3 4 GLU E 50 HIS E 51 -1 N GLU E 50 O TYR E 67 SHEET 1 AB4 4 LYS E 6 SER E 11 0 SHEET 2 AB4 4 ASN E 21 PHE E 30 -1 O SER E 28 N LYS E 6 SHEET 3 AB4 4 PHE E 62 PHE E 70 -1 O LEU E 64 N VAL E 27 SHEET 4 AB4 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 AB5 4 GLU E 44 ARG E 45 0 SHEET 2 AB5 4 ILE E 35 LYS E 41 -1 N LYS E 41 O GLU E 44 SHEET 3 AB5 4 TYR E 78 HIS E 84 -1 O ALA E 79 N LEU E 40 SHEET 4 AB5 4 LYS E 91 LYS E 94 -1 O LYS E 91 N VAL E 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.07 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.06 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.03 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.02 LINK N GLY A 1 CU CU A 301 1555 1555 2.04 LINK NE2 HIS A 3 CU CU A 301 1555 1555 2.02 LINK OE2 GLU A 76 CU CU C 101 1555 1555 2.02 LINK NE2 HIS A 191 CU CU A 302 1555 1555 2.02 LINK OE2 GLU A 254 CU CU A 302 1555 1555 2.02 LINK CU CU A 301 O HOH A 402 1555 1555 1.98 LINK CU CU A 302 OE2 GLU E 44 1555 1555 2.02 LINK O HOH A 401 CU CU C 101 1555 1555 1.97 LINK NE2 HIS C 8 CU CU C 101 1555 1555 2.02 LINK CU CU C 101 O HOH C 201 1555 1555 1.97 LINK N GLY D 1 CU CU D 301 1555 1555 2.03 LINK NE2 HIS D 3 CU CU D 301 1555 1555 2.03 LINK O HOH D 402 CU CU E 101 1555 1555 2.50 LINK OD1 ASP E 96 CU CU E 101 1555 1555 2.48 LINK NE2 HIS F 8 CU CU F 101 1555 1555 2.02 LINK CU CU F 101 O HOH F 202 1555 1555 1.97 LINK CU CU F 101 O HOH F 207 1555 1555 1.97 CISPEP 1 TYR A 209 PRO A 210 0 -1.68 CISPEP 2 HIS B 31 PRO B 32 0 0.92 CISPEP 3 TYR D 209 PRO D 210 0 -1.01 CISPEP 4 HIS E 31 PRO E 32 0 -2.27 SITE 1 AC1 5 GLY A 1 HIS A 3 GLN A 180 HOH A 402 SITE 2 AC1 5 HOH A 455 SITE 1 AC2 3 HIS A 191 GLU A 254 GLU E 44 SITE 1 AC3 5 GLU A 76 HOH A 401 HIS C 8 HOH C 201 SITE 2 AC3 5 HOH C 205 SITE 1 AC4 4 GLY D 1 HIS D 3 GLN D 180 HOH D 469 SITE 1 AC5 4 ASP D 29 ASP D 30 HOH D 432 TYR E 63 SITE 1 AC6 3 HOH D 402 ASP E 96 ASP E 98 SITE 1 AC7 4 GLU D 76 HIS F 8 HOH F 202 HOH F 207 SITE 1 AC8 3 HOH D 431 LYS F 3 ARG F 6 CRYST1 51.004 81.677 126.474 90.00 96.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019606 0.000000 0.002318 0.00000 SCALE2 0.000000 0.012243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007962 0.00000