HEADER OXIDOREDUCTASE 22-FEB-16 5IBO TITLE 1.95A RESOLUTION STRUCTURE OF NANOLUC LUCIFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OPLOPHORUS-LUCIFERIN 2-MONOOXYGENASE CATALYTIC SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FULL LENGTH; COMPND 5 SYNONYM: 19KOLASE; COMPND 6 EC: 1.13.12.13; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OPLOPHORUS GRACILIROSTRIS; SOURCE 3 ORGANISM_COMMON: LUMINOUS SHRIMP; SOURCE 4 ORGANISM_TAXID: 727944; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KRX; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFN18K(-AIA) KEYWDS OPLOPHORUS BIOLUMINESCENT PROTEIN, NANOLUC LUCIFERASE, NLUC, KEYWDS 2 COELENTERAZINE, FURIMAZINE, BETA-BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,N.MEHZABEEN,K.P.BATTAILE,M.G.WOOD,L.P.ENCELL,K.V.WOOD REVDAT 3 03-APR-24 5IBO 1 REMARK REVDAT 2 06-MAR-24 5IBO 1 REMARK REVDAT 1 13-APR-16 5IBO 0 JRNL AUTH S.LOVELL,N.MEHZABEEN,K.P.BATTAILE,M.G.WOOD,L.P.ENCELL, JRNL AUTH 2 K.V.WOOD JRNL TITL TO BE DETERMINED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2356: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.860 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 26285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4324 - 4.0557 0.98 3041 149 0.1649 0.2155 REMARK 3 2 4.0557 - 3.2193 0.99 2902 159 0.1689 0.2464 REMARK 3 3 3.2193 - 2.8124 0.99 2880 151 0.1977 0.2641 REMARK 3 4 2.8124 - 2.5553 0.97 2787 154 0.2126 0.2865 REMARK 3 5 2.5553 - 2.3722 0.92 2655 134 0.2115 0.2984 REMARK 3 6 2.3722 - 2.2323 0.88 2482 145 0.1990 0.2327 REMARK 3 7 2.2323 - 2.1205 0.96 2751 156 0.2026 0.2318 REMARK 3 8 2.1205 - 2.0282 1.00 2832 156 0.2292 0.2747 REMARK 3 9 2.0282 - 1.9501 0.92 2630 121 0.2417 0.3144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2650 REMARK 3 ANGLE : 1.098 3596 REMARK 3 CHIRALITY : 0.071 418 REMARK 3 PLANARITY : 0.007 458 REMARK 3 DIHEDRAL : 13.681 1528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5359 43.8903 12.8522 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: 0.1692 REMARK 3 T33: 0.1534 T12: 0.0467 REMARK 3 T13: 0.0231 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 0.0939 L22: 0.1853 REMARK 3 L33: 0.1160 L12: 0.0547 REMARK 3 L13: -0.0012 L23: -0.1435 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: 0.1670 S13: 0.0934 REMARK 3 S21: 0.0852 S22: 0.0614 S23: -0.0917 REMARK 3 S31: -0.0783 S32: -0.0847 S33: -0.0931 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6422 34.9159 12.7416 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.2309 REMARK 3 T33: 0.2486 T12: 0.0113 REMARK 3 T13: 0.0445 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 0.0079 L22: 0.1681 REMARK 3 L33: 0.0771 L12: -0.0177 REMARK 3 L13: -0.0110 L23: 0.1113 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.2669 S13: 0.0701 REMARK 3 S21: 0.0375 S22: 0.0941 S23: 0.2625 REMARK 3 S31: 0.0888 S32: -0.0552 S33: 0.0605 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.4015 48.3443 6.8032 REMARK 3 T TENSOR REMARK 3 T11: 0.0351 T22: 0.2235 REMARK 3 T33: 0.1796 T12: 0.0355 REMARK 3 T13: -0.0151 T23: 0.0484 REMARK 3 L TENSOR REMARK 3 L11: 0.0235 L22: 0.6827 REMARK 3 L33: 0.1431 L12: 0.1213 REMARK 3 L13: -0.0827 L23: -0.2577 REMARK 3 S TENSOR REMARK 3 S11: -0.0845 S12: 0.1113 S13: 0.2191 REMARK 3 S21: 0.3046 S22: 0.0147 S23: -0.0151 REMARK 3 S31: -0.2271 S32: 0.0011 S33: -0.0188 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8823 35.9861 35.2016 REMARK 3 T TENSOR REMARK 3 T11: 0.5558 T22: 0.1217 REMARK 3 T33: 0.2537 T12: 0.0798 REMARK 3 T13: 0.0790 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 0.1360 L22: 0.2125 REMARK 3 L33: 0.3492 L12: -0.0961 REMARK 3 L13: -0.0410 L23: 0.2302 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: 0.1099 S13: 0.1329 REMARK 3 S21: 0.1755 S22: -0.0648 S23: 0.0500 REMARK 3 S31: -0.0372 S32: -0.1267 S33: -0.1675 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.8786 50.6462 29.6939 REMARK 3 T TENSOR REMARK 3 T11: 0.4325 T22: 0.2367 REMARK 3 T33: 0.3450 T12: 0.0347 REMARK 3 T13: 0.0480 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 0.0063 L22: 0.0007 REMARK 3 L33: 0.0018 L12: -0.0014 REMARK 3 L13: -0.0012 L23: -0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.0220 S13: -0.0808 REMARK 3 S21: 0.0151 S22: 0.0063 S23: 0.0015 REMARK 3 S31: 0.0357 S32: -0.0007 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2641 38.1221 38.1341 REMARK 3 T TENSOR REMARK 3 T11: 0.5713 T22: 0.1965 REMARK 3 T33: 0.2052 T12: 0.0174 REMARK 3 T13: 0.0037 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.2457 L22: 0.0919 REMARK 3 L33: 0.0975 L12: -0.0474 REMARK 3 L13: 0.1030 L23: -0.0878 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: -0.0443 S13: 0.0983 REMARK 3 S21: 0.2826 S22: 0.0346 S23: 0.0761 REMARK 3 S31: 0.1417 S32: 0.0836 S33: 0.0062 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2701 45.8740 40.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.7850 T22: 0.0975 REMARK 3 T33: 0.2703 T12: 0.0325 REMARK 3 T13: 0.0862 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.0974 L22: 0.1440 REMARK 3 L33: 0.0446 L12: -0.0892 REMARK 3 L13: 0.0480 L23: -0.0596 REMARK 3 S TENSOR REMARK 3 S11: 0.1052 S12: -0.1329 S13: 0.1495 REMARK 3 S21: 0.5657 S22: 0.0557 S23: 0.0249 REMARK 3 S31: 0.1839 S32: 0.0619 S33: 0.0772 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8188 37.3458 39.6278 REMARK 3 T TENSOR REMARK 3 T11: 0.8762 T22: 0.0436 REMARK 3 T33: 0.0764 T12: 0.1201 REMARK 3 T13: 0.3509 T23: -0.1677 REMARK 3 L TENSOR REMARK 3 L11: 0.1026 L22: 0.1644 REMARK 3 L33: 0.4877 L12: 0.0452 REMARK 3 L13: 0.0763 L23: 0.2073 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: -0.0124 S13: 0.1642 REMARK 3 S21: 0.6089 S22: 0.0994 S23: 0.1844 REMARK 3 S31: -0.4003 S32: -0.1060 S33: 0.2562 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27490 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.85600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.4 REMARK 200 STARTING MODEL: IN-HOUSE SELENOMETHIONINE STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 200 MM AMMONIUM REMARK 280 NITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.21800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.32900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.21800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.32900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -4 REMARK 465 ASP A -3 REMARK 465 ASN A -2 REMARK 465 SER B -4 REMARK 465 ASP B -3 REMARK 465 ASN B -2 REMARK 465 SER B 28 REMARK 465 SER B 29 REMARK 465 GLY B 48 REMARK 465 LYS B 78 REMARK 465 VAL B 79 REMARK 465 GLY B 111 REMARK 465 ARG B 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A -1 CG SD CE REMARK 470 GLU A 23 CD OE1 OE2 REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 LYS A 75 CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 MET B -1 CG SD CE REMARK 470 ASP B 19 CG OD1 OD2 REMARK 470 VAL B 27 CG1 CG2 REMARK 470 LEU B 30 CG CD1 CD2 REMARK 470 PHE B 31 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 LYS B 53 CD CE NZ REMARK 470 ASP B 68 CG OD1 OD2 REMARK 470 GLN B 72 CG CD OE1 NE2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 TYR B 94 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 123 CD CE NZ REMARK 470 ASN B 156 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 55 O HOH A 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 142.30 -170.65 REMARK 500 LYS A 78 -45.51 71.85 REMARK 500 VAL A 102 -43.54 -136.43 REMARK 500 VAL B 83 -62.19 -125.01 REMARK 500 ILE B 99 67.77 -102.49 REMARK 500 VAL B 102 -55.69 -131.34 REMARK 500 LYS B 123 -52.80 -138.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DKA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DKA B 201 DBREF 5IBO A 1 169 UNP Q9GV45 LUCI_OPLGR 28 196 DBREF 5IBO B 1 169 UNP Q9GV45 LUCI_OPLGR 28 196 SEQADV 5IBO SER A -4 UNP Q9GV45 EXPRESSION TAG SEQADV 5IBO ASP A -3 UNP Q9GV45 EXPRESSION TAG SEQADV 5IBO ASN A -2 UNP Q9GV45 EXPRESSION TAG SEQADV 5IBO MET A -1 UNP Q9GV45 EXPRESSION TAG SEQADV 5IBO VAL A 0 UNP Q9GV45 EXPRESSION TAG SEQADV 5IBO GLU A 4 UNP Q9GV45 ALA 31 ENGINEERED MUTATION SEQADV 5IBO ARG A 11 UNP Q9GV45 GLN 38 ENGINEERED MUTATION SEQADV 5IBO LEU A 18 UNP Q9GV45 GLN 45 ENGINEERED MUTATION SEQADV 5IBO VAL A 27 UNP Q9GV45 LEU 54 ENGINEERED MUTATION SEQADV 5IBO ASN A 33 UNP Q9GV45 ALA 60 ENGINEERED MUTATION SEQADV 5IBO ARG A 43 UNP Q9GV45 LYS 70 ENGINEERED MUTATION SEQADV 5IBO ILE A 44 UNP Q9GV45 VAL 71 ENGINEERED MUTATION SEQADV 5IBO ILE A 54 UNP Q9GV45 ALA 81 ENGINEERED MUTATION SEQADV 5IBO ASP A 68 UNP Q9GV45 PHE 95 ENGINEERED MUTATION SEQADV 5IBO GLN A 72 UNP Q9GV45 LEU 99 ENGINEERED MUTATION SEQADV 5IBO LYS A 75 UNP Q9GV45 MET 102 ENGINEERED MUTATION SEQADV 5IBO VAL A 90 UNP Q9GV45 ILE 117 ENGINEERED MUTATION SEQADV 5IBO GLU A 115 UNP Q9GV45 PRO 142 ENGINEERED MUTATION SEQADV 5IBO LYS A 124 UNP Q9GV45 GLN 151 ENGINEERED MUTATION SEQADV 5IBO ILE A 138 UNP Q9GV45 TYR 165 ENGINEERED MUTATION SEQADV 5IBO ARG A 166 UNP Q9GV45 ASN 193 ENGINEERED MUTATION SEQADV 5IBO SER B -4 UNP Q9GV45 EXPRESSION TAG SEQADV 5IBO ASP B -3 UNP Q9GV45 EXPRESSION TAG SEQADV 5IBO ASN B -2 UNP Q9GV45 EXPRESSION TAG SEQADV 5IBO MET B -1 UNP Q9GV45 EXPRESSION TAG SEQADV 5IBO VAL B 0 UNP Q9GV45 EXPRESSION TAG SEQADV 5IBO GLU B 4 UNP Q9GV45 ALA 31 ENGINEERED MUTATION SEQADV 5IBO ARG B 11 UNP Q9GV45 GLN 38 ENGINEERED MUTATION SEQADV 5IBO LEU B 18 UNP Q9GV45 GLN 45 ENGINEERED MUTATION SEQADV 5IBO VAL B 27 UNP Q9GV45 LEU 54 ENGINEERED MUTATION SEQADV 5IBO ASN B 33 UNP Q9GV45 ALA 60 ENGINEERED MUTATION SEQADV 5IBO ARG B 43 UNP Q9GV45 LYS 70 ENGINEERED MUTATION SEQADV 5IBO ILE B 44 UNP Q9GV45 VAL 71 ENGINEERED MUTATION SEQADV 5IBO ILE B 54 UNP Q9GV45 ALA 81 ENGINEERED MUTATION SEQADV 5IBO ASP B 68 UNP Q9GV45 PHE 95 ENGINEERED MUTATION SEQADV 5IBO GLN B 72 UNP Q9GV45 LEU 99 ENGINEERED MUTATION SEQADV 5IBO LYS B 75 UNP Q9GV45 MET 102 ENGINEERED MUTATION SEQADV 5IBO VAL B 90 UNP Q9GV45 ILE 117 ENGINEERED MUTATION SEQADV 5IBO GLU B 115 UNP Q9GV45 PRO 142 ENGINEERED MUTATION SEQADV 5IBO LYS B 124 UNP Q9GV45 GLN 151 ENGINEERED MUTATION SEQADV 5IBO ILE B 138 UNP Q9GV45 TYR 165 ENGINEERED MUTATION SEQADV 5IBO ARG B 166 UNP Q9GV45 ASN 193 ENGINEERED MUTATION SEQRES 1 A 174 SER ASP ASN MET VAL PHE THR LEU GLU ASP PHE VAL GLY SEQRES 2 A 174 ASP TRP ARG GLN THR ALA GLY TYR ASN LEU ASP GLN VAL SEQRES 3 A 174 LEU GLU GLN GLY GLY VAL SER SER LEU PHE GLN ASN LEU SEQRES 4 A 174 GLY VAL SER VAL THR PRO ILE GLN ARG ILE VAL LEU SER SEQRES 5 A 174 GLY GLU ASN GLY LEU LYS ILE ASP ILE HIS VAL ILE ILE SEQRES 6 A 174 PRO TYR GLU GLY LEU SER GLY ASP GLN MET GLY GLN ILE SEQRES 7 A 174 GLU LYS ILE PHE LYS VAL VAL TYR PRO VAL ASP ASP HIS SEQRES 8 A 174 HIS PHE LYS VAL ILE LEU HIS TYR GLY THR LEU VAL ILE SEQRES 9 A 174 ASP GLY VAL THR PRO ASN MET ILE ASP TYR PHE GLY ARG SEQRES 10 A 174 PRO TYR GLU GLY ILE ALA VAL PHE ASP GLY LYS LYS ILE SEQRES 11 A 174 THR VAL THR GLY THR LEU TRP ASN GLY ASN LYS ILE ILE SEQRES 12 A 174 ASP GLU ARG LEU ILE ASN PRO ASP GLY SER LEU LEU PHE SEQRES 13 A 174 ARG VAL THR ILE ASN GLY VAL THR GLY TRP ARG LEU CYS SEQRES 14 A 174 GLU ARG ILE LEU ALA SEQRES 1 B 174 SER ASP ASN MET VAL PHE THR LEU GLU ASP PHE VAL GLY SEQRES 2 B 174 ASP TRP ARG GLN THR ALA GLY TYR ASN LEU ASP GLN VAL SEQRES 3 B 174 LEU GLU GLN GLY GLY VAL SER SER LEU PHE GLN ASN LEU SEQRES 4 B 174 GLY VAL SER VAL THR PRO ILE GLN ARG ILE VAL LEU SER SEQRES 5 B 174 GLY GLU ASN GLY LEU LYS ILE ASP ILE HIS VAL ILE ILE SEQRES 6 B 174 PRO TYR GLU GLY LEU SER GLY ASP GLN MET GLY GLN ILE SEQRES 7 B 174 GLU LYS ILE PHE LYS VAL VAL TYR PRO VAL ASP ASP HIS SEQRES 8 B 174 HIS PHE LYS VAL ILE LEU HIS TYR GLY THR LEU VAL ILE SEQRES 9 B 174 ASP GLY VAL THR PRO ASN MET ILE ASP TYR PHE GLY ARG SEQRES 10 B 174 PRO TYR GLU GLY ILE ALA VAL PHE ASP GLY LYS LYS ILE SEQRES 11 B 174 THR VAL THR GLY THR LEU TRP ASN GLY ASN LYS ILE ILE SEQRES 12 B 174 ASP GLU ARG LEU ILE ASN PRO ASP GLY SER LEU LEU PHE SEQRES 13 B 174 ARG VAL THR ILE ASN GLY VAL THR GLY TRP ARG LEU CYS SEQRES 14 B 174 GLU ARG ILE LEU ALA HET DKA A 201 12 HET DKA B 201 12 HETNAM DKA DECANOIC ACID FORMUL 3 DKA 2(C10 H20 O2) FORMUL 5 HOH *70(H2 O) HELIX 1 AA1 THR A 2 VAL A 7 5 6 HELIX 2 AA2 ASN A 17 GLN A 24 1 8 HELIX 3 AA3 VAL A 27 GLY A 35 1 9 HELIX 4 AA4 GLU A 63 LEU A 65 5 3 HELIX 5 AA5 SER A 66 LYS A 78 1 13 HELIX 6 AA6 THR B 2 VAL B 7 5 6 HELIX 7 AA7 ASN B 17 GLY B 25 1 9 HELIX 8 AA8 PHE B 31 GLY B 35 1 5 HELIX 9 AA9 GLU B 63 LEU B 65 5 3 HELIX 10 AB1 SER B 66 GLY B 67 5 2 HELIX 11 AB2 ASP B 68 PHE B 77 1 10 SHEET 1 AA1 6 TYR A 81 ASP A 84 0 SHEET 2 AA1 6 HIS A 87 VAL A 98 -1 O LYS A 89 N TYR A 81 SHEET 3 AA1 6 GLY A 51 PRO A 61 -1 N LEU A 52 O LEU A 97 SHEET 4 AA1 6 ILE A 41 LEU A 46 -1 N ARG A 43 O ASP A 55 SHEET 5 AA1 6 GLY A 8 TYR A 16 -1 N TRP A 10 O GLN A 42 SHEET 6 AA1 6 VAL B 36 SER B 37 -1 O SER B 37 N GLY A 15 SHEET 1 AA210 TYR A 81 ASP A 84 0 SHEET 2 AA210 HIS A 87 VAL A 98 -1 O LYS A 89 N TYR A 81 SHEET 3 AA210 ASN A 105 TYR A 109 -1 O ASP A 108 N TYR A 94 SHEET 4 AA210 ARG A 112 PHE A 120 -1 O TYR A 114 N ILE A 107 SHEET 5 AA210 LYS A 124 THR A 130 -1 O THR A 128 N ILE A 117 SHEET 6 AA210 LYS A 136 ILE A 143 -1 O ARG A 141 N ILE A 125 SHEET 7 AA210 LEU A 149 ILE A 155 -1 O LEU A 150 N LEU A 142 SHEET 8 AA210 VAL A 158 ARG A 166 -1 O CYS A 164 N LEU A 149 SHEET 9 AA210 GLY A 8 TYR A 16 -1 N THR A 13 O LEU A 163 SHEET 10 AA210 VAL B 36 SER B 37 -1 O SER B 37 N GLY A 15 SHEET 1 AA3 6 VAL A 36 SER A 37 0 SHEET 2 AA3 6 GLY B 8 TYR B 16 -1 O GLY B 15 N SER A 37 SHEET 3 AA3 6 ILE B 41 LEU B 46 -1 O GLN B 42 N TRP B 10 SHEET 4 AA3 6 GLY B 51 PRO B 61 -1 O HIS B 57 N ILE B 41 SHEET 5 AA3 6 HIS B 87 VAL B 98 -1 O HIS B 93 N ILE B 56 SHEET 6 AA3 6 TYR B 81 PRO B 82 -1 N TYR B 81 O LYS B 89 SHEET 1 AA410 VAL A 36 SER A 37 0 SHEET 2 AA410 GLY B 8 TYR B 16 -1 O GLY B 15 N SER A 37 SHEET 3 AA410 VAL B 158 ARG B 166 -1 O LEU B 163 N THR B 13 SHEET 4 AA410 LEU B 149 ILE B 155 -1 N LEU B 149 O CYS B 164 SHEET 5 AA410 LYS B 136 ILE B 143 -1 N ILE B 138 O THR B 154 SHEET 6 AA410 ILE B 125 THR B 130 -1 N GLY B 129 O ILE B 137 SHEET 7 AA410 TYR B 114 PHE B 120 -1 N VAL B 119 O THR B 126 SHEET 8 AA410 ASN B 105 TYR B 109 -1 N ASN B 105 O GLY B 116 SHEET 9 AA410 HIS B 87 VAL B 98 -1 N TYR B 94 O ASP B 108 SHEET 10 AA410 TYR B 81 PRO B 82 -1 N TYR B 81 O LYS B 89 SITE 1 AC1 9 GLU A 4 VAL A 7 ARG A 43 TYR A 81 SITE 2 AC1 9 LYS A 89 ARG A 166 HOH A 310 HOH A 327 SITE 3 AC1 9 HOH A 332 SITE 1 AC2 6 GLU B 4 VAL B 7 ARG B 43 LYS B 89 SITE 2 AC2 6 ARG B 166 HOH B 312 CRYST1 60.436 62.658 96.835 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016546 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010327 0.00000