HEADER SOLUTE-BINDING PROTEIN 22-FEB-16 5IBQ TITLE CRYSTAL STRUCTURE OF AN ABC SOLUTE BINDING PROTEIN FROM RHIZOBIUM ETLI TITLE 2 CFN 42 (RHE_PF00037,TARGET EFI-511357) IN COMPLEX WITH ALPHA-D-APIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RIBOSE ABC TRANSPORTER, SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM ETLI; SOURCE 3 ORGANISM_TAXID: 347834; SOURCE 4 STRAIN: CFN 42 / ATCC 51251; SOURCE 5 GENE: RHE_PF00037; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ABC TRANSPORTER SOLUTE BINDING PROTEIN, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,M.S.CARTER,N.F.AL OBAIDI,L.L.MORISCO,J.BENACH,J.KOSS, AUTHOR 2 S.R.WASSERMAN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 3 27-SEP-23 5IBQ 1 HETSYN REVDAT 2 29-JUL-20 5IBQ 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 20-APR-16 5IBQ 0 JRNL AUTH M.W.VETTING,M.S.CARTER,N.F.AL OBAIDI,L.L.MORISCO,J.BENACH, JRNL AUTH 2 J.KOSS,S.R.WASSERMAN,J.A.GERLT,S.C.ALMO, JRNL AUTH 3 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF AN ABC SOLUTE BINDING PROTEIN FROM JRNL TITL 2 RHIZOBIUM ETLI CFN 42 (RHE_PF00037,TARGET EFI-511357) IN JRNL TITL 3 COMPLEX WITH ALPHA-D-APIOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 85413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9892 - 3.7266 0.96 2876 156 0.1346 0.1467 REMARK 3 2 3.7266 - 2.9587 0.98 2835 152 0.1356 0.1590 REMARK 3 3 2.9587 - 2.5849 0.98 2825 147 0.1356 0.1477 REMARK 3 4 2.5849 - 2.3486 0.97 2788 160 0.1332 0.1352 REMARK 3 5 2.3486 - 2.1803 0.97 2785 139 0.1259 0.1435 REMARK 3 6 2.1803 - 2.0518 0.97 2770 155 0.1396 0.1453 REMARK 3 7 2.0518 - 1.9491 0.97 2764 147 0.1388 0.1553 REMARK 3 8 1.9491 - 1.8642 0.96 2754 151 0.1421 0.1675 REMARK 3 9 1.8642 - 1.7925 0.96 2751 147 0.1411 0.1494 REMARK 3 10 1.7925 - 1.7306 0.96 2742 146 0.1398 0.1441 REMARK 3 11 1.7306 - 1.6765 0.96 2690 165 0.1386 0.1477 REMARK 3 12 1.6765 - 1.6286 0.96 2735 161 0.1375 0.1433 REMARK 3 13 1.6286 - 1.5857 0.95 2744 146 0.1310 0.1383 REMARK 3 14 1.5857 - 1.5470 0.95 2695 148 0.1343 0.1582 REMARK 3 15 1.5470 - 1.5119 0.95 2666 171 0.1463 0.1685 REMARK 3 16 1.5119 - 1.4797 0.94 2670 139 0.1468 0.1870 REMARK 3 17 1.4797 - 1.4501 0.95 2737 138 0.1580 0.1966 REMARK 3 18 1.4501 - 1.4227 0.94 2662 121 0.1709 0.1822 REMARK 3 19 1.4227 - 1.3973 0.94 2704 130 0.1804 0.1977 REMARK 3 20 1.3973 - 1.3736 0.94 2655 143 0.1864 0.2414 REMARK 3 21 1.3736 - 1.3515 0.93 2627 149 0.1898 0.2009 REMARK 3 22 1.3515 - 1.3307 0.93 2674 131 0.1945 0.2335 REMARK 3 23 1.3307 - 1.3111 0.93 2628 135 0.2003 0.1808 REMARK 3 24 1.3111 - 1.2927 0.93 2647 142 0.2040 0.2461 REMARK 3 25 1.2927 - 1.2752 0.92 2617 131 0.2156 0.2185 REMARK 3 26 1.2752 - 1.2586 0.92 2621 133 0.2254 0.2160 REMARK 3 27 1.2586 - 1.2429 0.92 2671 122 0.2282 0.2340 REMARK 3 28 1.2429 - 1.2279 0.91 2538 129 0.2334 0.2771 REMARK 3 29 1.2279 - 1.2136 0.92 2661 140 0.2407 0.2573 REMARK 3 30 1.2136 - 1.2000 0.91 2582 125 0.2542 0.2585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2226 REMARK 3 ANGLE : 0.969 3021 REMARK 3 CHIRALITY : 0.080 350 REMARK 3 PLANARITY : 0.006 400 REMARK 3 DIHEDRAL : 18.871 820 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2767 27.5958 33.8884 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.1124 REMARK 3 T33: 0.0935 T12: -0.0474 REMARK 3 T13: 0.0039 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.0220 L22: 0.7264 REMARK 3 L33: 0.4267 L12: 0.1970 REMARK 3 L13: 0.0420 L23: -0.1318 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: -0.1238 S13: 0.1429 REMARK 3 S21: 0.0364 S22: -0.0014 S23: -0.0122 REMARK 3 S31: -0.3164 S32: 0.1903 S33: 0.0254 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4108 18.3469 20.1426 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.0806 REMARK 3 T33: 0.0707 T12: -0.0150 REMARK 3 T13: 0.0091 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.7400 L22: 0.2554 REMARK 3 L33: 1.2639 L12: 0.1535 REMARK 3 L13: 0.2199 L23: 0.1200 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: 0.0161 S13: 0.0085 REMARK 3 S21: -0.0189 S22: 0.0090 S23: -0.0204 REMARK 3 S31: -0.0679 S32: 0.2404 S33: -0.0025 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1165 19.4445 6.9831 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0573 REMARK 3 T33: 0.0780 T12: -0.0046 REMARK 3 T13: 0.0031 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.8000 L22: 0.5674 REMARK 3 L33: 0.9675 L12: 0.2369 REMARK 3 L13: 0.2224 L23: 0.2435 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.1488 S13: 0.0968 REMARK 3 S21: -0.0342 S22: 0.0207 S23: 0.0725 REMARK 3 S31: -0.1015 S32: 0.0141 S33: -0.0056 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7030 18.9801 14.9817 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0835 REMARK 3 T33: 0.0934 T12: 0.0047 REMARK 3 T13: 0.0027 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.7783 L22: 0.5961 REMARK 3 L33: 0.8889 L12: 0.0997 REMARK 3 L13: -0.1575 L23: 0.2589 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.0333 S13: 0.0734 REMARK 3 S21: -0.0279 S22: -0.0196 S23: 0.0993 REMARK 3 S31: -0.0760 S32: -0.2300 S33: 0.0019 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4033 11.7048 31.4526 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.0869 REMARK 3 T33: 0.0882 T12: -0.0027 REMARK 3 T13: 0.0029 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.6649 L22: 0.4597 REMARK 3 L33: 1.1262 L12: 0.0632 REMARK 3 L13: 0.5328 L23: 0.3913 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: -0.2179 S13: -0.1528 REMARK 3 S21: 0.0774 S22: 0.0221 S23: -0.0334 REMARK 3 S31: 0.1748 S32: 0.0295 S33: -0.0510 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85430 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 41.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4RY0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, REMARK 280 10 MM D-APIOSE) INCUBATE AT 37 DEGREES C FOR 30 MINUTES; REMARK 280 RESERVOIR (MCSG1 B6, 0.2 M CALCIUM ACETATE, 0.1 M MES PH 6.0, 20 REMARK 280 %(W/V) PEG 8000); CRYOPROTECTION (20% GLUCOSE), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.63600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.46200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.63600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.46200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 567 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 825 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 906 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 ASP A 15 REMARK 465 LEU A 16 REMARK 465 GLY A 17 REMARK 465 THR A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 465 LEU A 21 REMARK 465 TYR A 22 REMARK 465 PHE A 23 REMARK 465 GLN A 24 REMARK 465 SER A 25 REMARK 465 ASN A 313 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 26 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 194 O HOH A 502 1.34 REMARK 500 O HOH A 638 O HOH A 749 1.92 REMARK 500 O HOH A 886 O HOH A 924 1.97 REMARK 500 O HOH A 501 O HOH A 811 1.97 REMARK 500 OE1 GLN A 194 O HOH A 501 1.99 REMARK 500 O HOH A 853 O HOH A 909 2.02 REMARK 500 O HOH A 578 O HOH A 835 2.05 REMARK 500 NE2 GLN A 194 O HOH A 502 2.06 REMARK 500 O HOH A 877 O HOH A 918 2.06 REMARK 500 O HOH A 873 O HOH A 896 2.07 REMARK 500 OE1 GLN A 141 O HOH A 503 2.08 REMARK 500 O HOH A 620 O HOH A 765 2.09 REMARK 500 OE1 GLU A 274 O HOH A 504 2.13 REMARK 500 O HOH A 777 O HOH A 784 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 794 O HOH A 835 2656 2.04 REMARK 500 O HOH A 587 O HOH A 590 2656 2.08 REMARK 500 O HOH A 880 O HOH A 911 1545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 35 -176.96 -68.88 REMARK 500 ASP A 115 -59.16 76.47 REMARK 500 VAL A 123 -64.32 -107.27 REMARK 500 ASP A 210 48.31 -88.43 REMARK 500 ASP A 243 -49.36 151.06 REMARK 500 ASN A 282 22.64 -151.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 933 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 934 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 935 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 936 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 174 O REMARK 620 2 ASP A 177 OD1 83.4 REMARK 620 3 ASP A 178 OD1 110.9 80.9 REMARK 620 4 ASP A 178 OD2 73.1 98.4 44.2 REMARK 620 5 VAL A 185 O 68.8 14.8 89.3 96.3 REMARK 620 6 HOH A 556 O 91.7 77.9 146.8 164.7 76.3 REMARK 620 7 HOH A 758 O 91.3 163.1 86.1 64.7 156.4 118.4 REMARK 620 8 HOH A 781 O 85.6 127.7 149.5 126.5 121.0 51.4 67.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-511357 RELATED DB: TARGETTRACK DBREF 5IBQ A 27 313 UNP Q2JZQ5 Q2JZQ5_RHIEC 27 313 SEQADV 5IBQ MET A 4 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ HIS A 5 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ HIS A 6 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ HIS A 7 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ HIS A 8 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ HIS A 9 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ HIS A 10 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ SER A 11 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ SER A 12 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ GLY A 13 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ VAL A 14 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ ASP A 15 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ LEU A 16 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ GLY A 17 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ THR A 18 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ GLU A 19 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ ASN A 20 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ LEU A 21 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ TYR A 22 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ PHE A 23 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ GLN A 24 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ SER A 25 UNP Q2JZQ5 EXPRESSION TAG SEQADV 5IBQ MET A 26 UNP Q2JZQ5 EXPRESSION TAG SEQRES 1 A 310 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 310 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA ASP LEU SEQRES 3 A 310 ILE ALA ILE ILE THR PRO ALA HIS ASP ASN PRO PHE PHE SEQRES 4 A 310 LYS ALA GLU ALA VAL GLY ALA GLU ALA LYS ALA LYS GLU SEQRES 5 A 310 LEU GLY TYR GLU THR LEU VAL MET THR HIS ASP ASP ASP SEQRES 6 A 310 ALA ASN LYS GLN SER GLU MET ILE ASP THR ALA ILE GLY SEQRES 7 A 310 ARG GLY ALA LYS ALA ILE ILE LEU ASP ASN ALA GLY ALA SEQRES 8 A 310 ASP ALA SER VAL ALA ALA VAL LYS LYS ALA LYS ASP ALA SEQRES 9 A 310 GLY ILE PRO SER PHE LEU ILE ASP ARG GLU ILE ASN ALA SEQRES 10 A 310 THR GLY VAL ALA VAL ALA GLN ILE VAL SER ASN ASN TYR SEQRES 11 A 310 GLN GLY ALA GLN LEU GLY ALA GLN GLU PHE VAL LYS LEU SEQRES 12 A 310 MET GLY GLU LYS GLY ASN TYR VAL GLU LEU VAL GLY LYS SEQRES 13 A 310 GLU SER ASP THR ASN ALA GLY ILE ARG SER GLN GLY TYR SEQRES 14 A 310 HIS ASP VAL ILE ASP ASP TYR PRO GLU MET LYS SER VAL SEQRES 15 A 310 ALA LYS GLN SER ALA ASN TRP SER GLN THR GLU ALA TYR SEQRES 16 A 310 SER LYS MET GLU THR ILE LEU GLN ALA ASN PRO ASP ILE SEQRES 17 A 310 LYS GLY VAL ILE SER GLY ASN ASP THR MET ALA MET GLY SEQRES 18 A 310 ALA ILE ALA ALA LEU GLN ALA ALA GLY ARG LYS ASP VAL SEQRES 19 A 310 ILE VAL VAL GLY PHE ASP GLY SER ASN ASP VAL ARG ASP SEQRES 20 A 310 SER ILE LYS SER GLY GLY ILE LYS ALA THR VAL LEU GLN SEQRES 21 A 310 PRO ALA TYR ALA GLN ALA GLN LEU ALA VAL GLU GLN ALA SEQRES 22 A 310 ASP ALA TYR ILE LYS ASN LYS THR THR PRO LYS GLU GLU SEQRES 23 A 310 LYS GLN LEU MET ASP CYS VAL LEU ILE ASN ALA ASP ASN SEQRES 24 A 310 ALA GLY LYS LEU GLU THR PHE ALA LEU THR ASN HET XXM A 401 10 HET CA A 402 1 HETNAM XXM 3-C-(HYDROXYLMETHYL)-ALPHA-D-ERYTHROFURANOSE HETNAM CA CALCIUM ION HETSYN XXM ALPHA-D-APIOSE; 3-C-(HYDROXYLMETHYL)-ALPHA-D-ERYTHROSE; HETSYN 2 XXM 3-C-(HYDROXYLMETHYL)-D-ERYTHROSE; 3-C- HETSYN 3 XXM (HYDROXYLMETHYL)-ERYTHROSE; (2S,3R,4R)-4- HETSYN 4 XXM (HYDROXYMETHYL)OXOLANE-2,3,4-TRIOL FORMUL 2 XXM C5 H10 O5 FORMUL 3 CA CA 2+ FORMUL 4 HOH *436(H2 O) HELIX 1 AA1 ASN A 39 LEU A 56 1 18 HELIX 2 AA2 ASP A 68 ARG A 82 1 15 HELIX 3 AA3 SER A 97 ALA A 107 1 11 HELIX 4 AA4 ASN A 131 MET A 147 1 17 HELIX 5 AA5 ASP A 162 ASP A 177 1 16 HELIX 6 AA6 SER A 193 ASN A 208 1 16 HELIX 7 AA7 ASN A 218 ALA A 232 1 15 HELIX 8 AA8 SER A 245 SER A 254 1 10 HELIX 9 AA9 PRO A 264 LYS A 283 1 20 HELIX 10 AB1 ASN A 302 GLY A 304 5 3 SHEET 1 AA1 6 GLU A 59 THR A 64 0 SHEET 2 AA1 6 LEU A 29 THR A 34 1 N ILE A 32 O MET A 63 SHEET 3 AA1 6 ALA A 86 LEU A 89 1 O ILE A 88 N ALA A 31 SHEET 4 AA1 6 SER A 111 ILE A 114 1 O PHE A 112 N ILE A 87 SHEET 5 AA1 6 ALA A 126 SER A 130 1 O ILE A 128 N LEU A 113 SHEET 6 AA1 6 LYS A 290 MET A 293 1 O GLN A 291 N GLN A 127 SHEET 1 AA2 4 MET A 182 SER A 189 0 SHEET 2 AA2 4 GLY A 151 VAL A 157 1 N TYR A 153 O VAL A 185 SHEET 3 AA2 4 GLY A 213 SER A 216 1 O ILE A 215 N VAL A 154 SHEET 4 AA2 4 ILE A 238 VAL A 240 1 O ILE A 238 N VAL A 214 SHEET 1 AA3 2 THR A 260 LEU A 262 0 SHEET 2 AA3 2 VAL A 296 ILE A 298 -1 O VAL A 296 N LEU A 262 SHEET 1 AA4 2 LEU A 306 GLU A 307 0 SHEET 2 AA4 2 ALA A 310 LEU A 311 -1 O ALA A 310 N GLU A 307 LINK O ASP A 174 CA CA A 402 1555 1555 2.34 LINK OD1 ASP A 177 CA CA A 402 1555 1555 2.36 LINK OD1 ASP A 178 CA CA A 402 1555 1555 2.44 LINK OD2 ASP A 178 CA CA A 402 1555 1555 3.08 LINK O VAL A 185 CA CA A 402 1555 4555 2.31 LINK CA CA A 402 O HOH A 556 1555 1555 2.48 LINK CA CA A 402 O HOH A 758 1555 1555 2.29 LINK CA CA A 402 O HOH A 781 1555 4545 2.58 CRYST1 93.272 36.924 95.619 90.00 118.02 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010721 0.000000 0.005706 0.00000 SCALE2 0.000000 0.027083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011847 0.00000