HEADER LIGASE,TRANSFERASE 23-FEB-16 5ICL TITLE CRYSTAL STRUCTURE OF ENTEROCOCCUS FAECALIS LIPOATE-PROTEIN LIGASE A TITLE 2 (LPLA-2) IN COMPLEX WITH LIPOYL-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOATE--PROTEIN LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.63; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS (STRAIN ATCC 700802 / SOURCE 3 V583); SOURCE 4 ORGANISM_TAXID: 226185; SOURCE 5 STRAIN: ATCC 700802 / V583; SOURCE 6 GENE: LPLA-2, EF_2741; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS LIGASE, PROTEIN-SUBSTRATE COMPLEX, LIPOIC ACID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HUGHES,T.ANTOSHCHENKO,J.H.SONG,H.W.PARK REVDAT 2 27-SEP-23 5ICL 1 REMARK REVDAT 1 15-MAR-17 5ICL 0 JRNL AUTH S.J.HUGHES,T.ANTOSHCHENKO,J.H.SONG,H.W.PARK JRNL TITL CRYSTAL STRUCTURE OF ENTEROCOCCUS FAECALIS LIPOATE-PROTEIN JRNL TITL 2 LIGASE A (LPLA-2) IN COMPLEX WITH LIPOYL-AMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 59481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3180 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 241 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.754 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5457 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5083 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7387 ; 1.165 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11712 ; 0.721 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 653 ; 5.990 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 294 ;33.507 ;25.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 950 ;11.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.705 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 788 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6251 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1281 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2603 ; 1.905 ; 0.975 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2601 ; 1.905 ; 0.975 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3259 ; 2.567 ; 1.454 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1370 0.5324 43.0764 REMARK 3 T TENSOR REMARK 3 T11: 0.1031 T22: 0.0267 REMARK 3 T33: 0.0736 T12: 0.0388 REMARK 3 T13: -0.0115 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 3.9812 L22: 1.3674 REMARK 3 L33: 3.0732 L12: -0.0222 REMARK 3 L13: 1.4000 L23: -0.5909 REMARK 3 S TENSOR REMARK 3 S11: 0.2891 S12: 0.1870 S13: -0.1319 REMARK 3 S21: -0.0107 S22: -0.0793 S23: 0.0700 REMARK 3 S31: 0.2858 S32: 0.1061 S33: -0.2099 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8762 9.2567 25.5449 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.1904 REMARK 3 T33: 0.0871 T12: 0.0490 REMARK 3 T13: -0.0100 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 3.8378 L22: 2.3048 REMARK 3 L33: 5.2848 L12: 0.5711 REMARK 3 L13: 0.5541 L23: -1.3465 REMARK 3 S TENSOR REMARK 3 S11: -0.2657 S12: 0.1763 S13: 0.1134 REMARK 3 S21: 0.1764 S22: 0.2670 S23: -0.1174 REMARK 3 S31: -0.4253 S32: -0.6785 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3388 34.9002 5.7525 REMARK 3 T TENSOR REMARK 3 T11: 0.0691 T22: 0.0352 REMARK 3 T33: 0.0446 T12: -0.0077 REMARK 3 T13: 0.0206 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 3.6862 L22: 1.4844 REMARK 3 L33: 2.0140 L12: 0.0879 REMARK 3 L13: 0.6324 L23: 0.6360 REMARK 3 S TENSOR REMARK 3 S11: 0.2777 S12: -0.0941 S13: 0.0821 REMARK 3 S21: -0.0276 S22: -0.2200 S23: 0.1249 REMARK 3 S31: 0.1839 S32: -0.0909 S33: -0.0577 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 248 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3064 43.4019 23.2531 REMARK 3 T TENSOR REMARK 3 T11: 0.0952 T22: 0.1294 REMARK 3 T33: 0.1141 T12: -0.0553 REMARK 3 T13: 0.0671 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 3.8979 L22: 0.9168 REMARK 3 L33: 3.5965 L12: -0.6291 REMARK 3 L13: 1.2160 L23: 0.3062 REMARK 3 S TENSOR REMARK 3 S11: -0.1104 S12: -0.2011 S13: 0.1259 REMARK 3 S21: 0.0086 S22: 0.2077 S23: -0.1683 REMARK 3 S31: -0.2697 S32: 0.2877 S33: -0.0973 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5ICL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62746 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5IBY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 UL PROTEIN + 1.5 UL BUFFER (31% REMARK 280 PEG3350, 0.1 M SODIUM CACODYLATE, 0.2 M SODIUM CHLORIDE, PH 5.25) REMARK 280 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.67500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 LYS A 164 REMARK 465 VAL A 165 REMARK 465 ARG A 166 REMARK 465 LYS A 167 REMARK 465 ASP A 168 REMARK 465 LYS A 169 REMARK 465 ILE A 170 REMARK 465 GLU A 171 REMARK 465 SER A 172 REMARK 465 LYS A 173 REMARK 465 GLY A 174 REMARK 465 ILE A 175 REMARK 465 LYS A 176 REMARK 465 SER A 177 REMARK 465 VAL A 178 REMARK 465 ARG A 179 REMARK 465 SER A 180 REMARK 465 MET B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 VAL B 165 REMARK 465 ARG B 166 REMARK 465 LYS B 167 REMARK 465 ASP B 168 REMARK 465 LYS B 169 REMARK 465 ILE B 170 REMARK 465 GLU B 171 REMARK 465 SER B 172 REMARK 465 LYS B 173 REMARK 465 GLY B 174 REMARK 465 ILE B 175 REMARK 465 LYS B 176 REMARK 465 SER B 177 REMARK 465 VAL B 178 REMARK 465 ARG B 179 REMARK 465 SER B 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 113.88 -38.43 REMARK 500 LYS A 55 -63.20 70.74 REMARK 500 ASN A 93 26.49 -143.05 REMARK 500 ARG A 96 -12.83 75.83 REMARK 500 VAL A 114 70.34 -102.16 REMARK 500 ASN A 123 19.15 -140.89 REMARK 500 ASP A 153 47.02 -151.58 REMARK 500 TYR A 238 -71.83 -109.36 REMARK 500 TYR A 246 -79.76 -104.83 REMARK 500 ARG B 96 -2.69 80.61 REMARK 500 ARG B 122 -55.54 74.14 REMARK 500 ASP B 153 51.21 -147.81 REMARK 500 TYR B 238 -72.81 -109.65 REMARK 500 TYR B 246 -83.73 -110.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LAQ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LAQ B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IBY RELATED DB: PDB REMARK 900 RELATED ID: 5ICH RELATED DB: PDB REMARK 900 RELATED ID: 5IDH RELATED DB: PDB REMARK 900 RELATED ID: 5IY1 RELATED DB: PDB DBREF 5ICL A 1 334 UNP Q830N7 Q830N7_ENTFA 1 334 DBREF 5ICL B 1 334 UNP Q830N7 Q830N7_ENTFA 1 334 SEQADV 5ICL MET A -17 UNP Q830N7 INITIATING METHIONINE SEQADV 5ICL HIS A -16 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL HIS A -15 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL HIS A -14 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL HIS A -13 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL HIS A -12 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL HIS A -11 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL SER A -10 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL SER A -9 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL GLY A -8 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL ARG A -7 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL GLU A -6 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL ASN A -5 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL LEU A -4 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL TYR A -3 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL PHE A -2 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL GLN A -1 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL GLY A 0 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL MET B -17 UNP Q830N7 INITIATING METHIONINE SEQADV 5ICL HIS B -16 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL HIS B -15 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL HIS B -14 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL HIS B -13 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL HIS B -12 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL HIS B -11 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL SER B -10 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL SER B -9 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL GLY B -8 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL ARG B -7 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL GLU B -6 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL ASN B -5 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL LEU B -4 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL TYR B -3 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL PHE B -2 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL GLN B -1 UNP Q830N7 EXPRESSION TAG SEQADV 5ICL GLY B 0 UNP Q830N7 EXPRESSION TAG SEQRES 1 A 352 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 352 LEU TYR PHE GLN GLY MET ILE PHE VAL PRO ASN GLU ASN SEQRES 3 A 352 ASN ASP PRO ARG VAL ASN LEU ALA ILE GLU THR TYR LEU SEQRES 4 A 352 LEU THR GLU MET PRO LEU ASP GLU PRO ILE LEU LEU PHE SEQRES 5 A 352 TYR ILE ASN GLU PRO SER ILE ILE ILE GLY ARG ASN GLN SEQRES 6 A 352 ASN THR ILE GLU GLU ILE ASN LYS GLU TYR VAL ASP GLU SEQRES 7 A 352 HIS GLY ILE HIS VAL VAL ARG ARG LEU SER GLY GLY GLY SEQRES 8 A 352 ALA VAL TYR HIS ASP HIS GLY ASN LEU ASN PHE SER PHE SEQRES 9 A 352 ILE MET PRO ASP ASP GLY ASN SER PHE ARG ASP PHE ALA SEQRES 10 A 352 LYS VAL THR GLN PRO ILE ILE GLN ALA LEU HIS ASP LEU SEQRES 11 A 352 GLY VAL GLU GLY ALA GLU LEU LYS GLY ARG ASN ASP LEU SEQRES 12 A 352 VAL ILE ASN ASP MET LYS PHE SER GLY ASN ALA MET TYR SEQRES 13 A 352 ALA THR ASN GLY ARG MET PHE ALA HIS GLY THR LEU MET SEQRES 14 A 352 PHE ASP SER ASP ILE ASP GLU VAL VAL ASN THR LEU LYS SEQRES 15 A 352 VAL ARG LYS ASP LYS ILE GLU SER LYS GLY ILE LYS SER SEQRES 16 A 352 VAL ARG SER ARG VAL THR ASN ILE LYS PRO PHE LEU SER SEQRES 17 A 352 GLU ASP LYS GLN GLU MET THR THR GLU GLU PHE ARG GLN SEQRES 18 A 352 GLU ILE LEU LEU LYS ILE PHE GLY VAL ASP SER ILE ASP SEQRES 19 A 352 GLN VAL LYS THR TYR GLU LEU THR ASP GLN ASP TRP ALA SEQRES 20 A 352 ALA ILE ASN LYS ILE SER GLU GLN TYR TYR ARG ASN TRP SEQRES 21 A 352 ASP TRP ASN TYR GLY LYS SER PRO ALA PHE ASN LEU GLU SEQRES 22 A 352 ARG ARG HIS ARG PHE PRO ILE GLY SER ILE GLU MET LYS SEQRES 23 A 352 MET ASN VAL ALA ASP GLY ALA ILE GLN GLU ILE LYS ILE SEQRES 24 A 352 PHE GLY ASP PHE PHE GLY LEU GLY GLU ILE LYS ASP VAL SEQRES 25 A 352 GLU ASP ILE LEU THR GLY VAL LYS TYR ASP LYS ALA SER SEQRES 26 A 352 LEU GLU GLU ALA ILE ASP GLN ILE ASP VAL LYS LYS TYR SEQRES 27 A 352 PHE GLY ASN ILE GLU LYS GLU ASP LEU LEU GLY LEU ILE SEQRES 28 A 352 TYR SEQRES 1 B 352 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 352 LEU TYR PHE GLN GLY MET ILE PHE VAL PRO ASN GLU ASN SEQRES 3 B 352 ASN ASP PRO ARG VAL ASN LEU ALA ILE GLU THR TYR LEU SEQRES 4 B 352 LEU THR GLU MET PRO LEU ASP GLU PRO ILE LEU LEU PHE SEQRES 5 B 352 TYR ILE ASN GLU PRO SER ILE ILE ILE GLY ARG ASN GLN SEQRES 6 B 352 ASN THR ILE GLU GLU ILE ASN LYS GLU TYR VAL ASP GLU SEQRES 7 B 352 HIS GLY ILE HIS VAL VAL ARG ARG LEU SER GLY GLY GLY SEQRES 8 B 352 ALA VAL TYR HIS ASP HIS GLY ASN LEU ASN PHE SER PHE SEQRES 9 B 352 ILE MET PRO ASP ASP GLY ASN SER PHE ARG ASP PHE ALA SEQRES 10 B 352 LYS VAL THR GLN PRO ILE ILE GLN ALA LEU HIS ASP LEU SEQRES 11 B 352 GLY VAL GLU GLY ALA GLU LEU LYS GLY ARG ASN ASP LEU SEQRES 12 B 352 VAL ILE ASN ASP MET LYS PHE SER GLY ASN ALA MET TYR SEQRES 13 B 352 ALA THR ASN GLY ARG MET PHE ALA HIS GLY THR LEU MET SEQRES 14 B 352 PHE ASP SER ASP ILE ASP GLU VAL VAL ASN THR LEU LYS SEQRES 15 B 352 VAL ARG LYS ASP LYS ILE GLU SER LYS GLY ILE LYS SER SEQRES 16 B 352 VAL ARG SER ARG VAL THR ASN ILE LYS PRO PHE LEU SER SEQRES 17 B 352 GLU ASP LYS GLN GLU MET THR THR GLU GLU PHE ARG GLN SEQRES 18 B 352 GLU ILE LEU LEU LYS ILE PHE GLY VAL ASP SER ILE ASP SEQRES 19 B 352 GLN VAL LYS THR TYR GLU LEU THR ASP GLN ASP TRP ALA SEQRES 20 B 352 ALA ILE ASN LYS ILE SER GLU GLN TYR TYR ARG ASN TRP SEQRES 21 B 352 ASP TRP ASN TYR GLY LYS SER PRO ALA PHE ASN LEU GLU SEQRES 22 B 352 ARG ARG HIS ARG PHE PRO ILE GLY SER ILE GLU MET LYS SEQRES 23 B 352 MET ASN VAL ALA ASP GLY ALA ILE GLN GLU ILE LYS ILE SEQRES 24 B 352 PHE GLY ASP PHE PHE GLY LEU GLY GLU ILE LYS ASP VAL SEQRES 25 B 352 GLU ASP ILE LEU THR GLY VAL LYS TYR ASP LYS ALA SER SEQRES 26 B 352 LEU GLU GLU ALA ILE ASP GLN ILE ASP VAL LYS LYS TYR SEQRES 27 B 352 PHE GLY ASN ILE GLU LYS GLU ASP LEU LEU GLY LEU ILE SEQRES 28 B 352 TYR HET LAQ A 401 34 HET LAQ B 401 34 HETNAM LAQ 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY) HETNAM 2 LAQ (HYDROXY)PHOSPHORYL]ADENOSINE HETSYN LAQ LIPOYL-AMP FORMUL 3 LAQ 2(C18 H26 N5 O8 P S2) FORMUL 5 HOH *408(H2 O) HELIX 1 AA1 ASP A 10 MET A 25 1 16 HELIX 2 AA2 ASN A 48 ILE A 53 5 6 HELIX 3 AA3 LYS A 55 HIS A 61 1 7 HELIX 4 AA4 ASP A 97 LEU A 112 1 16 HELIX 5 AA5 ASP A 155 LEU A 163 1 9 HELIX 6 AA6 ILE A 185 LEU A 189 5 5 HELIX 7 AA7 SER A 190 GLN A 194 5 5 HELIX 8 AA8 THR A 197 GLY A 211 1 15 HELIX 9 AA9 SER A 214 VAL A 218 5 5 HELIX 10 AB1 THR A 224 TYR A 238 1 15 HELIX 11 AB2 ASN A 241 TYR A 246 1 6 HELIX 12 AB3 ILE A 291 THR A 299 1 9 HELIX 13 AB4 ASP A 304 GLN A 314 1 11 HELIX 14 AB5 ASP A 316 GLY A 322 1 7 HELIX 15 AB6 GLU A 325 TYR A 334 1 10 HELIX 16 AB7 ASP B 10 MET B 25 1 16 HELIX 17 AB8 ASN B 48 ILE B 53 1 6 HELIX 18 AB9 ASN B 54 HIS B 61 1 8 HELIX 19 AC1 ASP B 97 LEU B 112 1 16 HELIX 20 AC2 ASP B 155 LEU B 163 1 9 HELIX 21 AC3 ILE B 185 LEU B 189 5 5 HELIX 22 AC4 SER B 190 GLN B 194 5 5 HELIX 23 AC5 THR B 197 GLY B 211 1 15 HELIX 24 AC6 SER B 214 VAL B 218 5 5 HELIX 25 AC7 THR B 224 TYR B 238 1 15 HELIX 26 AC8 ASN B 241 TYR B 246 1 6 HELIX 27 AC9 GLU B 290 THR B 299 1 10 HELIX 28 AD1 ASP B 304 GLN B 314 1 11 HELIX 29 AD2 ASP B 316 PHE B 321 1 6 HELIX 30 AD3 GLU B 325 TYR B 334 1 10 SHEET 1 AA1 7 ILE A 2 VAL A 4 0 SHEET 2 AA1 7 ILE A 31 TYR A 35 1 O LEU A 32 N ILE A 2 SHEET 3 AA1 7 ASN A 83 PRO A 89 -1 O ILE A 87 N ILE A 31 SHEET 4 AA1 7 ARG A 143 GLY A 148 -1 O MET A 144 N MET A 88 SHEET 5 AA1 7 MET A 130 THR A 140 -1 N THR A 140 O ARG A 143 SHEET 6 AA1 7 ASP A 124 ILE A 127 -1 N ILE A 127 O MET A 130 SHEET 7 AA1 7 ALA A 117 LYS A 120 -1 N LYS A 120 O ASP A 124 SHEET 1 AA2 3 HIS A 64 ARG A 67 0 SHEET 2 AA2 3 SER A 40 ILE A 43 1 N ILE A 41 O HIS A 64 SHEET 3 AA2 3 VAL A 75 HIS A 77 -1 O HIS A 77 N SER A 40 SHEET 1 AA3 3 LEU A 254 PHE A 260 0 SHEET 2 AA3 3 GLY A 263 ALA A 272 -1 O MET A 267 N ARG A 256 SHEET 3 AA3 3 ALA A 275 GLY A 283 -1 O PHE A 282 N GLU A 266 SHEET 1 AA4 7 ILE B 2 VAL B 4 0 SHEET 2 AA4 7 ILE B 31 TYR B 35 1 O LEU B 32 N ILE B 2 SHEET 3 AA4 7 ASN B 81 PRO B 89 -1 O ILE B 87 N ILE B 31 SHEET 4 AA4 7 ARG B 143 MET B 151 -1 O MET B 144 N MET B 88 SHEET 5 AA4 7 MET B 130 THR B 140 -1 N PHE B 132 O MET B 151 SHEET 6 AA4 7 ASP B 124 ILE B 127 -1 N LEU B 125 O PHE B 132 SHEET 7 AA4 7 GLU B 118 LYS B 120 -1 N LYS B 120 O ASP B 124 SHEET 1 AA5 3 HIS B 64 ARG B 67 0 SHEET 2 AA5 3 SER B 40 ILE B 43 1 N ILE B 41 O HIS B 64 SHEET 3 AA5 3 VAL B 75 HIS B 77 -1 O HIS B 77 N SER B 40 SHEET 1 AA6 3 LEU B 254 PHE B 260 0 SHEET 2 AA6 3 GLY B 263 ALA B 272 -1 O MET B 269 N LEU B 254 SHEET 3 AA6 3 ALA B 275 GLY B 283 -1 O PHE B 282 N GLU B 266 SITE 1 AC1 18 TYR A 35 ARG A 68 GLY A 73 VAL A 75 SITE 2 AC1 18 TYR A 76 HIS A 77 ASN A 81 ASN A 123 SITE 3 AC1 18 LYS A 131 GLY A 134 HIS A 147 THR A 149 SITE 4 AC1 18 MET A 151 VAL A 159 PHE A 286 HOH A 539 SITE 5 AC1 18 HOH A 574 HOH A 581 SITE 1 AC2 21 TYR B 35 ARG B 68 GLY B 73 ALA B 74 SITE 2 AC2 21 VAL B 75 TYR B 76 HIS B 77 ASN B 81 SITE 3 AC2 21 ASN B 123 LYS B 131 GLY B 134 HIS B 147 SITE 4 AC2 21 THR B 149 MET B 151 VAL B 159 HOH B 502 SITE 5 AC2 21 HOH B 508 HOH B 518 HOH B 535 HOH B 570 SITE 6 AC2 21 HOH B 582 CRYST1 50.942 69.350 97.685 90.00 92.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019630 0.000000 0.000736 0.00000 SCALE2 0.000000 0.014420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010244 0.00000