HEADER SUGAR BINDING PROTEIN 24-FEB-16 5IDB TITLE CRYSTAL STRUCTURE OF CGL1 FROM CRASSOSTREA GIGAS, MANNOSE-BOUND FORM TITLE 2 (CGL1/MAN2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NATTERIN-3; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRASSOSTREA GIGAS; SOURCE 3 ORGANISM_COMMON: PACIFIC OYSTER; SOURCE 4 ORGANISM_TAXID: 29159; SOURCE 5 GENE: CGI_10011001, CGI_10018577; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CGL1, LECTIN, CRASSOSTREA GIGAS, N-TYPE, MANNOSE, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.UNNO REVDAT 5 20-MAR-24 5IDB 1 HETSYN REVDAT 4 29-JUL-20 5IDB 1 COMPND REMARK HETNAM SITE REVDAT 3 19-FEB-20 5IDB 1 REMARK REVDAT 2 03-AUG-16 5IDB 1 JRNL REVDAT 1 06-JUL-16 5IDB 0 JRNL AUTH H.UNNO,K.MATSUYAMA,Y.TSUJI,S.GODA,K.HIEMORI,H.TATENO, JRNL AUTH 2 J.HIRABAYASHI,T.HATAKEYAMA JRNL TITL IDENTIFICATION, CHARACTERIZATION, AND X-RAY CRYSTALLOGRAPHIC JRNL TITL 2 ANALYSIS OF A NOVEL TYPE OF MANNOSE-SPECIFIC LECTIN CGL1 JRNL TITL 3 FROM THE PACIFIC OYSTER CRASSOSTREA GIGAS. JRNL REF SCI REP V. 6 29135 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27377186 JRNL DOI 10.1038/SREP29135 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 124314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.123 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6598 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5014 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.573 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2313 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2170 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3143 ; 2.053 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5012 ; 1.145 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 360 ; 0.425 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2561 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 517 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1134 ; 0.946 ; 0.714 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1133 ; 0.947 ; 0.714 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1414 ; 1.124 ; 1.083 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1415 ; 1.123 ; 1.083 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1179 ; 2.686 ; 0.928 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1180 ; 2.685 ; 0.929 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1730 ; 3.063 ; 1.314 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2449 ; 4.903 ;10.854 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2040 ; 3.525 ; 9.165 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4483 ; 6.751 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 66 ;40.088 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4859 ;10.663 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5IDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131088 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 23.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3000, 100MM CHES, PH 9.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.66000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.19000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.19000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.66000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1127 O HOH A 1166 1.01 REMARK 500 O HOH A 1235 O HOH A 1264 1.02 REMARK 500 O HOH A 1101 O HOH A 1137 1.08 REMARK 500 O HOH A 1144 O HOH A 1246 1.09 REMARK 500 O HOH A 1216 O HOH A 1263 1.13 REMARK 500 O HOH A 1134 O HOH A 1276 1.13 REMARK 500 O HOH A 1183 O HOH A 1254 1.14 REMARK 500 O HOH A 1108 O HOH A 1259 1.14 REMARK 500 O HOH A 1325 O HOH A 1339 1.16 REMARK 500 O HOH A 1268 O HOH A 1289 1.17 REMARK 500 O HOH B 1229 O HOH B 1238 1.20 REMARK 500 O HOH A 1124 O HOH A 1245 1.21 REMARK 500 O HOH B 1213 O HOH B 1215 1.23 REMARK 500 O HOH B 1307 O HOH B 1311 1.26 REMARK 500 HD1 HIS A 116 H PHE A 119 1.28 REMARK 500 O HOH B 1196 O HOH B 1233 1.28 REMARK 500 O HOH A 1194 O HOH A 1202 1.29 REMARK 500 O HOH A 1102 O HOH A 1207 1.30 REMARK 500 O HOH A 1110 O HOH A 1226 1.34 REMARK 500 O HOH A 1227 O HOH A 1244 1.39 REMARK 500 O HOH A 1182 O HOH A 1280 1.39 REMARK 500 O HOH B 1105 O HOH B 1199 1.39 REMARK 500 O HOH A 1107 O HOH A 1180 1.42 REMARK 500 O HOH A 1204 O HOH A 1288 1.43 REMARK 500 O HOH B 1245 O HOH B 1254 1.45 REMARK 500 O HOH A 1151 O HOH A 1285 1.45 REMARK 500 HG3 GLN A 81 O HOH A 1274 1.47 REMARK 500 O HOH B 1268 O HOH A 1126 1.48 REMARK 500 O HOH B 1101 O HOH B 1116 1.48 REMARK 500 O HOH B 1183 O HOH B 1201 1.49 REMARK 500 CD GLU B 135 O HOH B 1102 1.51 REMARK 500 O HOH A 1303 O HOH A 1333 1.56 REMARK 500 O HOH A 1138 O HOH A 1149 1.56 REMARK 500 O HOH B 1116 O HOH B 1268 1.57 REMARK 500 O HOH A 1245 O HOH A 1326 1.58 REMARK 500 O HOH B 1307 O HOH A 1324 1.61 REMARK 500 O HOH B 1210 O HOH B 1265 1.61 REMARK 500 O HOH B 1133 O HOH B 1219 1.65 REMARK 500 O HOH B 1284 O HOH A 1347 1.65 REMARK 500 OD1 ASP B 79 O HOH B 1101 1.67 REMARK 500 O HOH A 1121 O HOH A 1165 1.70 REMARK 500 O HOH B 1215 O HOH B 1291 1.72 REMARK 500 O HOH B 1210 O HOH B 1212 1.74 REMARK 500 O HOH A 1119 O HOH A 1250 1.80 REMARK 500 OE1 GLU B 135 O HOH B 1102 1.81 REMARK 500 O HOH B 1186 O HOH B 1298 1.82 REMARK 500 OD2 ASP A 94 O HOH A 1101 1.90 REMARK 500 O HOH B 1183 O HOH B 1213 1.92 REMARK 500 O HOH B 1111 O HOH B 1182 1.97 REMARK 500 O HOH A 1165 O HOH A 1301 1.97 REMARK 500 REMARK 500 THIS ENTRY HAS 62 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1329 O HOH A 1355 4455 1.20 REMARK 500 O HOH A 1285 O HOH A 1355 4455 1.81 REMARK 500 O HOH B 1270 O HOH A 1316 1565 1.86 REMARK 500 O HOH A 1207 O HOH A 1314 4455 1.93 REMARK 500 O HOH A 1102 O HOH A 1350 4455 1.94 REMARK 500 O HOH A 1127 O HOH A 1307 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 18 CD ARG B 18 NE -0.218 REMARK 500 SER B 36 CB SER B 36 OG 0.135 REMARK 500 VAL B 69 CB VAL B 69 CG2 -0.147 REMARK 500 SER B 107 CB SER B 107 OG -0.102 REMARK 500 GLY A 90 N GLY A 90 CA -0.093 REMARK 500 SER A 107 CB SER A 107 OG -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 18 CD - NE - CZ ANGL. DEV. = 37.2 DEGREES REMARK 500 ARG B 18 NE - CZ - NH1 ANGL. DEV. = 20.7 DEGREES REMARK 500 ARG B 18 NE - CZ - NH2 ANGL. DEV. = -23.0 DEGREES REMARK 500 ARG A 18 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1323 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A1362 DISTANCE = 5.91 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 BMA A 1001 AND MAN A 1002 ARE IN ALTERNATE CONFORMATIONS OF EACH REMARK 600 OTHER. BMA B 1001 AND MAN B 1002 ARE IN ALTERNATE CONFORMATIONS OF REMARK 600 EACH OTHER. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ID8 RELATED DB: PDB REMARK 900 RELATED ID: 5IDA RELATED DB: PDB DBREF 5IDB B 2 143 UNP K1QRB6 K1QRB6_CRAGI 2 143 DBREF 5IDB A 2 143 UNP K1QRB6 K1QRB6_CRAGI 2 143 SEQRES 1 B 142 ALA GLU TRP VAL SER THR THR GLY ASN THR ILE PRO ASP SEQRES 2 B 142 ASN ALA ILE ARG ALA GLY TYR ASP ILE ASN LYS LYS ALA SEQRES 3 B 142 LEU PHE ILE ALA ARG ALA VAL VAL SER GLY GLU MET THR SEQRES 4 B 142 PRO GLY LYS CYS GLY THR HIS LEU GLU GLY ALA HIS ILE SEQRES 5 B 142 PRO PHE ALA GLY LYS GLU HIS ILE ILE GLN ASN TYR GLU SEQRES 6 B 142 VAL LEU VAL TYR PRO ILE ASN ALA LEU GLY PHE LEU ASP SEQRES 7 B 142 TRP GLN GLN ALA SER ASN GLY ASP VAL PRO GLY ASN ALA SEQRES 8 B 142 ILE ASP THR ALA SER GLY ILE TYR ILE GLY ARG VAL LEU SEQRES 9 B 142 TYR SER GLY SER LEU ILE PRO CYS LYS ILE HIS THR GLY SEQRES 10 B 142 PHE LYS VAL ALA TYR MET GLY PHE ALA GLY LYS GLU HIS SEQRES 11 B 142 GLN SER LYS GLU TYR GLU ALA LEU TYR LYS VAL ILE SEQRES 1 A 142 ALA GLU TRP VAL SER THR THR GLY ASN THR ILE PRO ASP SEQRES 2 A 142 ASN ALA ILE ARG ALA GLY TYR ASP ILE ASN LYS LYS ALA SEQRES 3 A 142 LEU PHE ILE ALA ARG ALA VAL VAL SER GLY GLU MET THR SEQRES 4 A 142 PRO GLY LYS CYS GLY THR HIS LEU GLU GLY ALA HIS ILE SEQRES 5 A 142 PRO PHE ALA GLY LYS GLU HIS ILE ILE GLN ASN TYR GLU SEQRES 6 A 142 VAL LEU VAL TYR PRO ILE ASN ALA LEU GLY PHE LEU ASP SEQRES 7 A 142 TRP GLN GLN ALA SER ASN GLY ASP VAL PRO GLY ASN ALA SEQRES 8 A 142 ILE ASP THR ALA SER GLY ILE TYR ILE GLY ARG VAL LEU SEQRES 9 A 142 TYR SER GLY SER LEU ILE PRO CYS LYS ILE HIS THR GLY SEQRES 10 A 142 PHE LYS VAL ALA TYR MET GLY PHE ALA GLY LYS GLU HIS SEQRES 11 A 142 GLN SER LYS GLU TYR GLU ALA LEU TYR LYS VAL ILE HET BMA B1001 20 HET MAN B1002 20 HET BMA B1003 20 HET BMA A1001 20 HET MAN A1002 20 HET BMA A1003 20 HET NHE A1004 29 HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 3 BMA 4(C6 H12 O6) FORMUL 4 MAN 2(C6 H12 O6) FORMUL 9 NHE C8 H17 N O3 S FORMUL 10 HOH *485(H2 O) SHEET 1 AA1 4 GLU B 3 THR B 8 0 SHEET 2 AA1 4 ASN B 64 VAL B 69 -1 O VAL B 69 N GLU B 3 SHEET 3 AA1 4 ALA B 27 VAL B 35 -1 N ARG B 32 O GLU B 66 SHEET 4 AA1 4 ARG B 18 TYR B 21 -1 N GLY B 20 O LEU B 28 SHEET 1 AA2 4 GLU B 3 THR B 8 0 SHEET 2 AA2 4 ASN B 64 VAL B 69 -1 O VAL B 69 N GLU B 3 SHEET 3 AA2 4 ALA B 27 VAL B 35 -1 N ARG B 32 O GLU B 66 SHEET 4 AA2 4 GLU B 38 CYS B 44 -1 O CYS B 44 N PHE B 29 SHEET 1 AA3 2 ALA B 51 PHE B 55 0 SHEET 2 AA3 2 LYS B 58 ILE B 62 -1 O HIS B 60 N ILE B 53 SHEET 1 AA4 4 PHE B 77 SER B 84 0 SHEET 2 AA4 4 GLU B 135 ILE B 143 -1 O TYR B 136 N ALA B 83 SHEET 3 AA4 4 ILE B 99 TYR B 106 -1 N ILE B 101 O LEU B 139 SHEET 4 AA4 4 ASP B 94 ALA B 96 -1 N THR B 95 O ILE B 99 SHEET 1 AA5 6 PHE B 77 SER B 84 0 SHEET 2 AA5 6 GLU B 135 ILE B 143 -1 O TYR B 136 N ALA B 83 SHEET 3 AA5 6 ILE B 99 TYR B 106 -1 N ILE B 101 O LEU B 139 SHEET 4 AA5 6 SER B 109 HIS B 116 -1 O ILE B 111 N VAL B 104 SHEET 5 AA5 6 VAL B 121 PHE B 126 -1 O VAL B 121 N HIS B 116 SHEET 6 AA5 6 LYS B 129 SER B 133 -1 O HIS B 131 N MET B 124 SHEET 1 AA6 4 GLU A 3 THR A 8 0 SHEET 2 AA6 4 ASN A 64 VAL A 69 -1 O VAL A 69 N GLU A 3 SHEET 3 AA6 4 ALA A 27 VAL A 35 -1 N ILE A 30 O LEU A 68 SHEET 4 AA6 4 ARG A 18 TYR A 21 -1 N ALA A 19 O LEU A 28 SHEET 1 AA7 4 GLU A 3 THR A 8 0 SHEET 2 AA7 4 ASN A 64 VAL A 69 -1 O VAL A 69 N GLU A 3 SHEET 3 AA7 4 ALA A 27 VAL A 35 -1 N ILE A 30 O LEU A 68 SHEET 4 AA7 4 GLU A 38 CYS A 44 -1 O THR A 40 N ALA A 33 SHEET 1 AA8 2 ALA A 51 PHE A 55 0 SHEET 2 AA8 2 LYS A 58 ILE A 62 -1 O HIS A 60 N ILE A 53 SHEET 1 AA9 4 PHE A 77 SER A 84 0 SHEET 2 AA9 4 GLU A 135 ILE A 143 -1 O TYR A 136 N ALA A 83 SHEET 3 AA9 4 ILE A 99 TYR A 106 -1 N ILE A 101 O LEU A 139 SHEET 4 AA9 4 ASP A 94 ALA A 96 -1 N THR A 95 O ILE A 99 SHEET 1 AB1 6 PHE A 77 SER A 84 0 SHEET 2 AB1 6 GLU A 135 ILE A 143 -1 O TYR A 136 N ALA A 83 SHEET 3 AB1 6 ILE A 99 TYR A 106 -1 N ILE A 101 O LEU A 139 SHEET 4 AB1 6 SER A 109 HIS A 116 -1 O ILE A 111 N VAL A 104 SHEET 5 AB1 6 VAL A 121 PHE A 126 -1 O VAL A 121 N HIS A 116 SHEET 6 AB1 6 LYS A 129 SER A 133 -1 O SER A 133 N ALA A 122 CRYST1 57.320 57.930 80.380 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012441 0.00000