HEADER OXIDOREDUCTASE 24-FEB-16 5IDQ TITLE CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR)FROM TITLE 2 BURKHOLDERIA VIETNAMIENSIS AT 1.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA VIETNAMIENSIS (STRAIN G4 / LMG SOURCE 3 22486); SOURCE 4 ORGANISM_TAXID: 269482; SOURCE 5 STRAIN: G4 / LMG 22486; SOURCE 6 GENE: BCEP1808_3023; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BUVIA.00010.RB1 KEYWDS SSGCID, SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR, BURKHOLDERIA KEYWDS 2 VIETNAMIENSIS, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 5IDQ 1 REMARK REVDAT 1 04-MAY-16 5IDQ 0 JRNL AUTH J.K.YANO,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASE/REDUCTASE JRNL TITL 2 (SDR)FROM BURKHOLDERIA VIETNAMIENSIS AT 1.55 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 57585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.360 REMARK 3 FREE R VALUE TEST SET COUNT : 1936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0316 - 3.7354 0.99 4090 139 0.1593 0.1917 REMARK 3 2 3.7354 - 2.9650 1.00 4035 130 0.1605 0.1798 REMARK 3 3 2.9650 - 2.5902 1.00 3991 141 0.1700 0.2125 REMARK 3 4 2.5902 - 2.3534 1.00 4011 130 0.1618 0.1848 REMARK 3 5 2.3534 - 2.1847 1.00 3960 164 0.1663 0.1914 REMARK 3 6 2.1847 - 2.0559 0.99 3991 117 0.1730 0.1988 REMARK 3 7 2.0559 - 1.9530 0.99 4011 109 0.1714 0.2439 REMARK 3 8 1.9530 - 1.8680 1.00 3941 152 0.1811 0.2216 REMARK 3 9 1.8680 - 1.7960 0.99 3944 153 0.1851 0.2204 REMARK 3 10 1.7960 - 1.7341 0.99 3920 150 0.1912 0.2289 REMARK 3 11 1.7341 - 1.6798 0.99 3909 165 0.1999 0.2411 REMARK 3 12 1.6798 - 1.6318 0.99 3939 134 0.2175 0.2572 REMARK 3 13 1.6318 - 1.5889 0.99 3933 113 0.2230 0.2378 REMARK 3 14 1.5889 - 1.5501 0.99 3974 139 0.2336 0.2896 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3314 REMARK 3 ANGLE : 1.170 4530 REMARK 3 CHIRALITY : 0.069 532 REMARK 3 PLANARITY : 0.008 592 REMARK 3 DIHEDRAL : 12.793 1980 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.2981 -0.0905 58.0623 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.1497 REMARK 3 T33: 0.1177 T12: -0.0299 REMARK 3 T13: -0.0457 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 3.3989 L22: 1.6019 REMARK 3 L33: 3.1579 L12: 1.4426 REMARK 3 L13: -1.1653 L23: -0.4676 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: 0.1736 S13: 0.0332 REMARK 3 S21: -0.2127 S22: 0.0495 S23: 0.1964 REMARK 3 S31: 0.0987 S32: -0.3434 S33: -0.0181 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.4576 6.6863 74.1157 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.1209 REMARK 3 T33: 0.0888 T12: 0.0093 REMARK 3 T13: -0.0132 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.8629 L22: 1.2317 REMARK 3 L33: 2.2260 L12: -0.0586 REMARK 3 L13: -0.0265 L23: 0.7940 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.0027 S13: -0.0223 REMARK 3 S21: -0.0884 S22: -0.0488 S23: 0.1210 REMARK 3 S31: -0.0814 S32: -0.2459 S33: 0.0209 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.3276 5.2866 66.2074 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.0778 REMARK 3 T33: 0.0791 T12: -0.0059 REMARK 3 T13: -0.0003 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.3470 L22: 1.2360 REMARK 3 L33: 2.7448 L12: 0.4442 REMARK 3 L13: -0.4785 L23: 0.5960 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.0389 S13: -0.0112 REMARK 3 S21: -0.0655 S22: 0.0663 S23: -0.0518 REMARK 3 S31: -0.0834 S32: 0.1543 S33: -0.0684 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.6476 16.6472 108.2238 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.1625 REMARK 3 T33: 0.0913 T12: 0.0131 REMARK 3 T13: 0.0410 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 2.8658 L22: 2.4420 REMARK 3 L33: 4.0745 L12: -1.5779 REMARK 3 L13: 1.1236 L23: -0.2491 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: -0.1917 S13: -0.1001 REMARK 3 S21: 0.1773 S22: 0.0445 S23: 0.1093 REMARK 3 S31: -0.2498 S32: -0.3875 S33: 0.0071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4976 18.5982 105.7500 REMARK 3 T TENSOR REMARK 3 T11: 0.2106 T22: 0.4032 REMARK 3 T33: 0.2219 T12: 0.0246 REMARK 3 T13: 0.0803 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.4833 L22: 1.0645 REMARK 3 L33: 2.2115 L12: -1.0183 REMARK 3 L13: 0.3508 L23: -0.5460 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.4415 S13: 0.0923 REMARK 3 S21: 0.3201 S22: -0.0913 S23: 0.4050 REMARK 3 S31: -0.0332 S32: -0.8038 S33: -0.0900 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.1804 22.0800 96.9172 REMARK 3 T TENSOR REMARK 3 T11: 0.2087 T22: 0.2008 REMARK 3 T33: 0.2110 T12: 0.0829 REMARK 3 T13: 0.0110 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 2.2248 L22: 0.7133 REMARK 3 L33: 1.9152 L12: -0.5504 REMARK 3 L13: -0.2249 L23: -0.2838 REMARK 3 S TENSOR REMARK 3 S11: -0.1286 S12: -0.0882 S13: 0.3109 REMARK 3 S21: 0.1398 S22: 0.0562 S23: 0.3159 REMARK 3 S31: -0.3439 S32: -0.4192 S33: 0.0669 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.0838 11.4746 87.7628 REMARK 3 T TENSOR REMARK 3 T11: 0.0952 T22: 0.2162 REMARK 3 T33: 0.1319 T12: 0.0222 REMARK 3 T13: 0.0042 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.1844 L22: 2.2437 REMARK 3 L33: 2.1586 L12: 0.2859 REMARK 3 L13: 0.0554 L23: 0.7831 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.0043 S13: 0.0323 REMARK 3 S21: 0.0253 S22: -0.1577 S23: 0.2680 REMARK 3 S31: -0.0719 S32: -0.4985 S33: 0.1079 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.4021 7.9804 91.1828 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0772 REMARK 3 T33: 0.0572 T12: -0.0221 REMARK 3 T13: -0.0023 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.6515 L22: 2.7958 REMARK 3 L33: 2.7714 L12: 0.7098 REMARK 3 L13: 0.1129 L23: 1.2781 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.0474 S13: -0.0674 REMARK 3 S21: 0.0783 S22: 0.0130 S23: -0.0206 REMARK 3 S31: 0.1513 S32: 0.0413 S33: -0.0675 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 144 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.4024 12.1508 91.4252 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.0698 REMARK 3 T33: 0.0712 T12: -0.0039 REMARK 3 T13: 0.0053 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.6611 L22: 1.0007 REMARK 3 L33: 2.4310 L12: 0.3057 REMARK 3 L13: 0.2294 L23: 0.9402 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.0002 S13: -0.0046 REMARK 3 S21: 0.0364 S22: 0.0457 S23: 0.0476 REMARK 3 S31: -0.0822 S32: -0.0551 S33: 0.0007 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.9474 14.6209 99.6872 REMARK 3 T TENSOR REMARK 3 T11: 0.0822 T22: 0.0710 REMARK 3 T33: 0.0840 T12: -0.0365 REMARK 3 T13: 0.0057 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.7136 L22: 2.2733 REMARK 3 L33: 2.0499 L12: -0.3544 REMARK 3 L13: 0.2606 L23: 0.1438 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: -0.1615 S13: 0.0996 REMARK 3 S21: 0.1218 S22: 0.0082 S23: -0.0942 REMARK 3 S31: -0.0694 S32: 0.3294 S33: 0.0391 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 47.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.530 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SNY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 CONDITION D10: 40% PEG 3350,0.2 REMARK 280 M CALCIUM ACENTATE, 0.1 M SODIUM CACODYLATE PH 6.5, REMARK 280 BUVIA.00010.RB1 AT 20.9 MG/ML, 1:1 DROP TO PROTEIN RATIO. DIRECT REMARK 280 CRYO, PLATE 269027D10, PUCK KTX5 POSITION 9, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.63500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 THR A 179 REMARK 465 ASP A 180 REMARK 465 MET A 181 REMARK 465 GLY A 182 REMARK 465 GLY A 183 REMARK 465 ALA A 184 REMARK 465 GLU A 185 REMARK 465 ALA A 186 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ARG B 178 REMARK 465 THR B 179 REMARK 465 ASP B 180 REMARK 465 MET B 181 REMARK 465 GLY B 182 REMARK 465 GLY B 183 REMARK 465 ALA B 184 REMARK 465 GLU B 185 REMARK 465 ALA B 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 34 CG OD1 OD2 REMARK 470 ASP B 35 CG OD1 OD2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 199 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 189 O HOH A 301 2.07 REMARK 500 O THR A 139 O HOH A 302 2.09 REMARK 500 OD1 ASP A 189 OG1 THR A 192 2.10 REMARK 500 O ASP B 67 O HOH B 301 2.10 REMARK 500 O VAL B 77 O HOH B 302 2.12 REMARK 500 O HOH A 451 O HOH A 470 2.15 REMARK 500 O HOH B 439 O HOH B 444 2.18 REMARK 500 NH1 ARG A 22 O HOH A 303 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 104 -54.83 -125.28 REMARK 500 SER A 129 -147.48 -104.40 REMARK 500 THR A 139 -79.49 -86.52 REMARK 500 ASP A 207 77.27 -158.31 REMARK 500 VAL B 104 -53.68 -123.78 REMARK 500 SER B 129 -145.05 -109.68 REMARK 500 ASP B 207 79.76 -159.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 512 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 489 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 490 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 491 DISTANCE = 6.03 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUVIA.00010.R RELATED DB: TARGETTRACK DBREF 5IDQ A 1 225 UNP A4JIB1 A4JIB1_BURVG 1 225 DBREF 5IDQ B 1 225 UNP A4JIB1 A4JIB1_BURVG 1 225 SEQADV 5IDQ MET A -7 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ ALA A -6 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS A -5 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS A -4 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS A -3 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS A -2 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS A -1 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS A 0 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ MET B -7 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ ALA B -6 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS B -5 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS B -4 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS B -3 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS B -2 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS B -1 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDQ HIS B 0 UNP A4JIB1 EXPRESSION TAG SEQRES 1 A 233 MET ALA HIS HIS HIS HIS HIS HIS MET LYS THR VAL LEU SEQRES 2 A 233 ILE VAL GLY ALA SER ARG GLY LEU GLY ARG GLU PHE VAL SEQRES 3 A 233 ARG GLN TYR ARG ARG ASP GLY TRP ASN VAL ILE ALA THR SEQRES 4 A 233 ALA ARG ASP ASP ALA SER LEU ALA ALA LEU ARG ALA ALA SEQRES 5 A 233 GLY ALA HIS ALA HIS ALA LEU ASP ILE ALA GLN PRO GLU SEQRES 6 A 233 GLN ILE ALA ALA LEU GLY TRP LYS LEU ASP GLY GLU ARG SEQRES 7 A 233 LEU ASP ALA ALA VAL LEU VAL SER GLY VAL TYR GLY PRO SEQRES 8 A 233 ARG THR GLU GLY VAL GLU THR ILE GLY ASN GLU ASP PHE SEQRES 9 A 233 ASP ALA VAL MET HIS THR ASN VAL ARG GLY PRO MET GLN SEQRES 10 A 233 LEU LEU PRO ILE VAL LEU PRO LEU VAL GLU ASP ALA ARG SEQRES 11 A 233 GLY VAL LEU ALA VAL VAL SER SER ARG MET GLY SER ILE SEQRES 12 A 233 ALA ASP ALA THR GLY THR THR GLY TRP LEU TYR ARG ALA SEQRES 13 A 233 SER LYS ALA ALA LEU ASN ASP VAL LEU ARG ILE ALA SER SEQRES 14 A 233 LEU GLN THR ARG HIS ALA ALA CYS ILE SER LEU HIS PRO SEQRES 15 A 233 GLY TRP VAL ARG THR ASP MET GLY GLY ALA GLU ALA ALA SEQRES 16 A 233 ILE ASP PRO GLU THR SER VAL THR GLY MET ARG ARG VAL SEQRES 17 A 233 ILE ALA GLU ALA GLY ALA ASP VAL SER ARG ALA ASN GLY SEQRES 18 A 233 ARG PHE LEU GLN TYR ASP GLY VAL GLU LEU SER TRP SEQRES 1 B 233 MET ALA HIS HIS HIS HIS HIS HIS MET LYS THR VAL LEU SEQRES 2 B 233 ILE VAL GLY ALA SER ARG GLY LEU GLY ARG GLU PHE VAL SEQRES 3 B 233 ARG GLN TYR ARG ARG ASP GLY TRP ASN VAL ILE ALA THR SEQRES 4 B 233 ALA ARG ASP ASP ALA SER LEU ALA ALA LEU ARG ALA ALA SEQRES 5 B 233 GLY ALA HIS ALA HIS ALA LEU ASP ILE ALA GLN PRO GLU SEQRES 6 B 233 GLN ILE ALA ALA LEU GLY TRP LYS LEU ASP GLY GLU ARG SEQRES 7 B 233 LEU ASP ALA ALA VAL LEU VAL SER GLY VAL TYR GLY PRO SEQRES 8 B 233 ARG THR GLU GLY VAL GLU THR ILE GLY ASN GLU ASP PHE SEQRES 9 B 233 ASP ALA VAL MET HIS THR ASN VAL ARG GLY PRO MET GLN SEQRES 10 B 233 LEU LEU PRO ILE VAL LEU PRO LEU VAL GLU ASP ALA ARG SEQRES 11 B 233 GLY VAL LEU ALA VAL VAL SER SER ARG MET GLY SER ILE SEQRES 12 B 233 ALA ASP ALA THR GLY THR THR GLY TRP LEU TYR ARG ALA SEQRES 13 B 233 SER LYS ALA ALA LEU ASN ASP VAL LEU ARG ILE ALA SER SEQRES 14 B 233 LEU GLN THR ARG HIS ALA ALA CYS ILE SER LEU HIS PRO SEQRES 15 B 233 GLY TRP VAL ARG THR ASP MET GLY GLY ALA GLU ALA ALA SEQRES 16 B 233 ILE ASP PRO GLU THR SER VAL THR GLY MET ARG ARG VAL SEQRES 17 B 233 ILE ALA GLU ALA GLY ALA ASP VAL SER ARG ALA ASN GLY SEQRES 18 B 233 ARG PHE LEU GLN TYR ASP GLY VAL GLU LEU SER TRP FORMUL 3 HOH *403(H2 O) HELIX 1 AA1 ARG A 11 ASP A 24 1 14 HELIX 2 AA2 ASP A 34 ALA A 44 1 11 HELIX 3 AA3 GLN A 55 ASP A 67 1 13 HELIX 4 AA4 GLY A 92 VAL A 104 1 13 HELIX 5 AA5 VAL A 104 ASP A 120 1 17 HELIX 6 AA6 SER A 130 SER A 134 5 5 HELIX 7 AA7 GLY A 143 THR A 164 1 22 HELIX 8 AA8 ASP A 189 ASP A 207 1 19 HELIX 9 AA9 ASP A 207 ASN A 212 1 6 HELIX 10 AB1 ARG B 11 ASP B 24 1 14 HELIX 11 AB2 ASP B 34 ALA B 44 1 11 HELIX 12 AB3 GLN B 55 LEU B 66 1 12 HELIX 13 AB4 GLY B 92 VAL B 104 1 13 HELIX 14 AB5 VAL B 104 ALA B 121 1 18 HELIX 15 AB6 SER B 130 SER B 134 5 5 HELIX 16 AB7 GLY B 143 THR B 164 1 22 HELIX 17 AB8 ASP B 189 ALA B 206 1 18 HELIX 18 AB9 ASP B 207 ASN B 212 1 6 SHEET 1 AA1 7 HIS A 47 ALA A 50 0 SHEET 2 AA1 7 ASN A 27 ALA A 32 1 N VAL A 28 O HIS A 47 SHEET 3 AA1 7 THR A 3 VAL A 7 1 N VAL A 4 O ILE A 29 SHEET 4 AA1 7 ALA A 73 LEU A 76 1 O VAL A 75 N LEU A 5 SHEET 5 AA1 7 VAL A 124 VAL A 128 1 O ALA A 126 N ALA A 74 SHEET 6 AA1 7 ALA A 168 HIS A 173 1 O ALA A 168 N LEU A 125 SHEET 7 AA1 7 PHE A 215 GLN A 217 1 O LEU A 216 N SER A 171 SHEET 1 AA2 7 HIS B 47 ALA B 50 0 SHEET 2 AA2 7 ASN B 27 ALA B 32 1 N VAL B 28 O HIS B 47 SHEET 3 AA2 7 THR B 3 VAL B 7 1 N VAL B 4 O ILE B 29 SHEET 4 AA2 7 ALA B 73 LEU B 76 1 O VAL B 75 N LEU B 5 SHEET 5 AA2 7 VAL B 124 VAL B 128 1 O ALA B 126 N ALA B 74 SHEET 6 AA2 7 ALA B 168 HIS B 173 1 O ALA B 168 N LEU B 125 SHEET 7 AA2 7 PHE B 215 GLN B 217 1 O LEU B 216 N SER B 171 CRYST1 61.370 49.270 66.820 90.00 94.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016295 0.000000 0.001342 0.00000 SCALE2 0.000000 0.020296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015016 0.00000