HEADER OXIDOREDUCTASE 24-FEB-16 5IDW TITLE CRYSTAL STRUCTURE OF AN OXIDOREDUCTASE FROM BURKHOLDERIA VIETNAMIENSIS TITLE 2 IN COMPLEX WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA VIETNAMIENSIS (STRAIN G4 / LMG SOURCE 3 22486); SOURCE 4 ORGANISM_TAXID: 269482; SOURCE 5 STRAIN: G4 / LMG 22486; SOURCE 6 GENE: BCEP1808_3023; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BUVIA.00010.R.B1 KEYWDS SSGCID, OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY, KEYWDS 2 NADP, BRUCELLA OVIS, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 5IDW 1 REMARK REVDAT 1 16-MAR-16 5IDW 0 JRNL AUTH S.J.MAYCLIN,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF AN OXIDOREDUCTASE FROM BURKHOLDERIA JRNL TITL 2 VIETNAMIENSIS IN COMPLEX WITH NADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2313 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 27115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4151 - 4.5773 0.99 2197 148 0.1749 0.2034 REMARK 3 2 4.5773 - 3.6337 0.99 2111 175 0.1465 0.1900 REMARK 3 3 3.6337 - 3.1745 1.00 2129 164 0.1704 0.2248 REMARK 3 4 3.1745 - 2.8843 1.00 2139 140 0.1865 0.2423 REMARK 3 5 2.8843 - 2.6776 1.00 2153 117 0.1939 0.2785 REMARK 3 6 2.6776 - 2.5198 1.00 2115 159 0.1955 0.2411 REMARK 3 7 2.5198 - 2.3936 1.00 2100 143 0.1810 0.2568 REMARK 3 8 2.3936 - 2.2894 0.99 2110 143 0.1742 0.2532 REMARK 3 9 2.2894 - 2.2013 0.98 2091 139 0.1899 0.2566 REMARK 3 10 2.2013 - 2.1253 0.99 2095 132 0.1924 0.2862 REMARK 3 11 2.1253 - 2.0589 0.97 2082 125 0.2219 0.2933 REMARK 3 12 2.0589 - 2.0000 0.97 2090 118 0.2367 0.3347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3487 REMARK 3 ANGLE : 0.825 4772 REMARK 3 CHIRALITY : 0.050 554 REMARK 3 PLANARITY : 0.005 617 REMARK 3 DIHEDRAL : 14.965 2034 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.2359 0.2902 58.1650 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.1427 REMARK 3 T33: 0.1312 T12: -0.0234 REMARK 3 T13: -0.0642 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.2309 L22: 1.0267 REMARK 3 L33: 2.4780 L12: 0.5139 REMARK 3 L13: -0.7125 L23: -0.1020 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.1823 S13: -0.1987 REMARK 3 S21: -0.2692 S22: -0.0495 S23: 0.1870 REMARK 3 S31: 0.0113 S32: -0.2755 S33: 0.0612 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.9853 7.2564 72.2681 REMARK 3 T TENSOR REMARK 3 T11: 0.0728 T22: 0.0961 REMARK 3 T33: 0.0798 T12: 0.0013 REMARK 3 T13: -0.0106 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.3447 L22: 1.0075 REMARK 3 L33: 2.0220 L12: -0.3984 REMARK 3 L13: -0.3209 L23: 0.6546 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.0587 S13: -0.0027 REMARK 3 S21: -0.0861 S22: -0.0356 S23: 0.0757 REMARK 3 S31: -0.0437 S32: -0.1149 S33: 0.0272 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.0953 4.2987 66.2423 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.1093 REMARK 3 T33: 0.0747 T12: 0.0310 REMARK 3 T13: 0.0119 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.7754 L22: 1.4540 REMARK 3 L33: 0.7385 L12: 0.2295 REMARK 3 L13: -0.1809 L23: 0.2409 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: 0.0839 S13: -0.0824 REMARK 3 S21: -0.1398 S22: 0.0499 S23: -0.0516 REMARK 3 S31: 0.1046 S32: 0.2947 S33: -0.0167 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.3136 17.8049 105.0838 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.2042 REMARK 3 T33: 0.1881 T12: 0.0479 REMARK 3 T13: 0.1031 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.9708 L22: 1.1213 REMARK 3 L33: 1.9047 L12: -0.0761 REMARK 3 L13: 0.6723 L23: -0.2536 REMARK 3 S TENSOR REMARK 3 S11: -0.0528 S12: -0.2332 S13: 0.1501 REMARK 3 S21: 0.4004 S22: -0.0375 S23: 0.3637 REMARK 3 S31: -0.0921 S32: -0.4229 S33: 0.0609 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.1419 12.0369 89.8219 REMARK 3 T TENSOR REMARK 3 T11: 0.0596 T22: 0.1039 REMARK 3 T33: 0.0667 T12: 0.0114 REMARK 3 T13: 0.0063 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.1181 L22: 2.7842 REMARK 3 L33: 2.4038 L12: 0.4301 REMARK 3 L13: 0.0714 L23: 0.8641 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0043 S13: 0.0700 REMARK 3 S21: 0.1264 S22: 0.0202 S23: 0.1462 REMARK 3 S31: -0.0509 S32: -0.1380 S33: 0.0047 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 77.2065 11.7587 99.7851 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.0801 REMARK 3 T33: 0.0559 T12: -0.0109 REMARK 3 T13: 0.0186 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.0647 L22: 0.8445 REMARK 3 L33: 1.8078 L12: -0.2351 REMARK 3 L13: 0.1873 L23: 0.2795 REMARK 3 S TENSOR REMARK 3 S11: -0.0508 S12: -0.1740 S13: -0.0619 REMARK 3 S21: 0.1757 S22: 0.0765 S23: -0.0066 REMARK 3 S31: 0.1041 S32: 0.0128 S33: -0.0131 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RIGAKU VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27131 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.230 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.13 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5IDQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 D10 (269027D10): 0.2 M CALCIUM REMARK 280 ACETATE 0.1 M SODIUM CACODYLATE:HCL PH 6.5 40% (V/V ) PEG 300; REMARK 280 PROTEIN CONC. 20.9MG/ML; 5MM NADP SOAK; DIRECT CRYO; PUCK FOE9-7, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.61500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 TRP B 64 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 64 CZ3 CH2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 ARG B 70 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 ARG B 199 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 210 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 451 O HOH B 454 2.13 REMARK 500 O HOH A 455 O HOH A 555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 104 -54.48 -127.10 REMARK 500 SER A 129 -146.07 -104.04 REMARK 500 ASP A 137 47.36 -101.31 REMARK 500 ASP A 207 84.18 -157.42 REMARK 500 VAL B 104 -57.28 -124.82 REMARK 500 SER B 129 -146.71 -105.36 REMARK 500 ASP B 137 47.62 -100.73 REMARK 500 ASP B 207 81.54 -153.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 597 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 578 DISTANCE = 6.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IDX RELATED DB: PDB REMARK 900 RELATED ID: 5IDY RELATED DB: PDB DBREF 5IDW A 1 225 UNP A4JIB1 A4JIB1_BURVG 1 225 DBREF 5IDW B 1 225 UNP A4JIB1 A4JIB1_BURVG 1 225 SEQADV 5IDW MET A -7 UNP A4JIB1 INITIATING METHIONINE SEQADV 5IDW ALA A -6 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS A -5 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS A -4 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS A -3 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS A -2 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS A -1 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS A 0 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW MET B -7 UNP A4JIB1 INITIATING METHIONINE SEQADV 5IDW ALA B -6 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS B -5 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS B -4 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS B -3 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS B -2 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS B -1 UNP A4JIB1 EXPRESSION TAG SEQADV 5IDW HIS B 0 UNP A4JIB1 EXPRESSION TAG SEQRES 1 A 233 MET ALA HIS HIS HIS HIS HIS HIS MET LYS THR VAL LEU SEQRES 2 A 233 ILE VAL GLY ALA SER ARG GLY LEU GLY ARG GLU PHE VAL SEQRES 3 A 233 ARG GLN TYR ARG ARG ASP GLY TRP ASN VAL ILE ALA THR SEQRES 4 A 233 ALA ARG ASP ASP ALA SER LEU ALA ALA LEU ARG ALA ALA SEQRES 5 A 233 GLY ALA HIS ALA HIS ALA LEU ASP ILE ALA GLN PRO GLU SEQRES 6 A 233 GLN ILE ALA ALA LEU GLY TRP LYS LEU ASP GLY GLU ARG SEQRES 7 A 233 LEU ASP ALA ALA VAL LEU VAL SER GLY VAL TYR GLY PRO SEQRES 8 A 233 ARG THR GLU GLY VAL GLU THR ILE GLY ASN GLU ASP PHE SEQRES 9 A 233 ASP ALA VAL MET HIS THR ASN VAL ARG GLY PRO MET GLN SEQRES 10 A 233 LEU LEU PRO ILE VAL LEU PRO LEU VAL GLU ASP ALA ARG SEQRES 11 A 233 GLY VAL LEU ALA VAL VAL SER SER ARG MET GLY SER ILE SEQRES 12 A 233 ALA ASP ALA THR GLY THR THR GLY TRP LEU TYR ARG ALA SEQRES 13 A 233 SER LYS ALA ALA LEU ASN ASP VAL LEU ARG ILE ALA SER SEQRES 14 A 233 LEU GLN THR ARG HIS ALA ALA CYS ILE SER LEU HIS PRO SEQRES 15 A 233 GLY TRP VAL ARG THR ASP MET GLY GLY ALA GLU ALA ALA SEQRES 16 A 233 ILE ASP PRO GLU THR SER VAL THR GLY MET ARG ARG VAL SEQRES 17 A 233 ILE ALA GLU ALA GLY ALA ASP VAL SER ARG ALA ASN GLY SEQRES 18 A 233 ARG PHE LEU GLN TYR ASP GLY VAL GLU LEU SER TRP SEQRES 1 B 233 MET ALA HIS HIS HIS HIS HIS HIS MET LYS THR VAL LEU SEQRES 2 B 233 ILE VAL GLY ALA SER ARG GLY LEU GLY ARG GLU PHE VAL SEQRES 3 B 233 ARG GLN TYR ARG ARG ASP GLY TRP ASN VAL ILE ALA THR SEQRES 4 B 233 ALA ARG ASP ASP ALA SER LEU ALA ALA LEU ARG ALA ALA SEQRES 5 B 233 GLY ALA HIS ALA HIS ALA LEU ASP ILE ALA GLN PRO GLU SEQRES 6 B 233 GLN ILE ALA ALA LEU GLY TRP LYS LEU ASP GLY GLU ARG SEQRES 7 B 233 LEU ASP ALA ALA VAL LEU VAL SER GLY VAL TYR GLY PRO SEQRES 8 B 233 ARG THR GLU GLY VAL GLU THR ILE GLY ASN GLU ASP PHE SEQRES 9 B 233 ASP ALA VAL MET HIS THR ASN VAL ARG GLY PRO MET GLN SEQRES 10 B 233 LEU LEU PRO ILE VAL LEU PRO LEU VAL GLU ASP ALA ARG SEQRES 11 B 233 GLY VAL LEU ALA VAL VAL SER SER ARG MET GLY SER ILE SEQRES 12 B 233 ALA ASP ALA THR GLY THR THR GLY TRP LEU TYR ARG ALA SEQRES 13 B 233 SER LYS ALA ALA LEU ASN ASP VAL LEU ARG ILE ALA SER SEQRES 14 B 233 LEU GLN THR ARG HIS ALA ALA CYS ILE SER LEU HIS PRO SEQRES 15 B 233 GLY TRP VAL ARG THR ASP MET GLY GLY ALA GLU ALA ALA SEQRES 16 B 233 ILE ASP PRO GLU THR SER VAL THR GLY MET ARG ARG VAL SEQRES 17 B 233 ILE ALA GLU ALA GLY ALA ASP VAL SER ARG ALA ASN GLY SEQRES 18 B 233 ARG PHE LEU GLN TYR ASP GLY VAL GLU LEU SER TRP HET NAP A 301 48 HET NAP B 301 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *375(H2 O) HELIX 1 AA1 ARG A 11 ASP A 24 1 14 HELIX 2 AA2 ASP A 34 ALA A 44 1 11 HELIX 3 AA3 GLN A 55 ASP A 67 1 13 HELIX 4 AA4 GLY A 92 VAL A 104 1 13 HELIX 5 AA5 VAL A 104 ALA A 121 1 18 HELIX 6 AA6 SER A 130 SER A 134 5 5 HELIX 7 AA7 GLY A 143 THR A 164 1 22 HELIX 8 AA8 ASP A 189 ASP A 207 1 19 HELIX 9 AA9 ASP A 207 ASN A 212 1 6 HELIX 10 AB1 ARG B 11 ASP B 24 1 14 HELIX 11 AB2 ASP B 34 ALA B 44 1 11 HELIX 12 AB3 GLN B 55 LEU B 66 1 12 HELIX 13 AB4 GLY B 92 VAL B 104 1 13 HELIX 14 AB5 VAL B 104 ALA B 121 1 18 HELIX 15 AB6 SER B 130 SER B 134 5 5 HELIX 16 AB7 GLY B 143 THR B 164 1 22 HELIX 17 AB8 ASP B 189 ASP B 207 1 19 HELIX 18 AB9 ASP B 207 ASN B 212 1 6 SHEET 1 AA1 7 HIS A 47 ALA A 50 0 SHEET 2 AA1 7 ASN A 27 ALA A 32 1 N VAL A 28 O HIS A 47 SHEET 3 AA1 7 THR A 3 VAL A 7 1 N ILE A 6 O ILE A 29 SHEET 4 AA1 7 ALA A 73 LEU A 76 1 O VAL A 75 N LEU A 5 SHEET 5 AA1 7 VAL A 124 VAL A 128 1 O ALA A 126 N ALA A 74 SHEET 6 AA1 7 ALA A 168 HIS A 173 1 O ALA A 168 N LEU A 125 SHEET 7 AA1 7 PHE A 215 GLN A 217 1 O LEU A 216 N SER A 171 SHEET 1 AA2 7 HIS B 47 ALA B 50 0 SHEET 2 AA2 7 ASN B 27 ALA B 32 1 N VAL B 28 O HIS B 47 SHEET 3 AA2 7 THR B 3 VAL B 7 1 N ILE B 6 O ILE B 29 SHEET 4 AA2 7 ALA B 73 LEU B 76 1 O VAL B 75 N LEU B 5 SHEET 5 AA2 7 VAL B 124 VAL B 128 1 O ALA B 126 N ALA B 74 SHEET 6 AA2 7 ALA B 168 HIS B 173 1 O LEU B 172 N VAL B 127 SHEET 7 AA2 7 PHE B 215 GLN B 217 1 O LEU B 216 N SER B 171 SITE 1 AC1 32 SER A 10 ARG A 11 GLY A 12 LEU A 13 SITE 2 AC1 32 ARG A 33 LEU A 51 ASP A 52 ILE A 53 SITE 3 AC1 32 VAL A 77 SER A 78 GLY A 79 VAL A 80 SITE 4 AC1 32 THR A 102 VAL A 128 SER A 129 SER A 130 SITE 5 AC1 32 TYR A 146 LYS A 150 PRO A 174 GLY A 175 SITE 6 AC1 32 TRP A 176 VAL A 177 THR A 179 MET A 181 SITE 7 AC1 32 HOH A 404 HOH A 426 HOH A 428 HOH A 457 SITE 8 AC1 32 HOH A 472 HOH A 504 HOH A 510 HOH A 511 SITE 1 AC2 29 SER B 10 ARG B 11 LEU B 13 ARG B 33 SITE 2 AC2 29 LEU B 51 ASP B 52 ILE B 53 VAL B 77 SITE 3 AC2 29 SER B 78 GLY B 79 VAL B 80 THR B 102 SITE 4 AC2 29 VAL B 128 SER B 129 SER B 130 TYR B 146 SITE 5 AC2 29 LYS B 150 PRO B 174 GLY B 175 TRP B 176 SITE 6 AC2 29 VAL B 177 THR B 179 MET B 181 HOH B 405 SITE 7 AC2 29 HOH B 431 HOH B 435 HOH B 469 HOH B 482 SITE 8 AC2 29 HOH B 514 CRYST1 61.810 49.230 66.960 90.00 94.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016179 0.000000 0.001411 0.00000 SCALE2 0.000000 0.020313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014991 0.00000