HEADER LIGASE 24-FEB-16 5IE3 TITLE CRYSTAL STRUCTURE OF A PLANT ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXALATE--COA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4-COUMARATE--COA LIGASE ISOFORM 8,AT4CL8,4-COUMARATE--COA COMPND 5 LIGASE-LIKE 10,ACYL-ACTIVATING ENZYME 3,ADENOSINE MONOPHOSPHATE COMPND 6 BINDING PROTEIN 3,ATMPBP3,OXALYL-COA SYNTHETASE; COMPND 7 EC: 6.2.1.8; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AAE3, 4CLL10, AMPBP3, AT3G48990, T2J13.170; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARABIDOPSIS, OXALATE DEGRADATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.R.FAN,M.LI,W.R.CHANG REVDAT 2 20-MAR-24 5IE3 1 REMARK REVDAT 1 07-DEC-16 5IE3 0 JRNL AUTH M.FAN,Y.XIAO,M.LI,W.CHANG JRNL TITL CRYSTAL STRUCTURES OF ARABIDOPSIS THALIANA OXALYL-COA JRNL TITL 2 SYNTHETASE ESSENTIAL FOR OXALATE DEGRADATION JRNL REF MOL PLANT V. 9 1349 2016 JRNL REFN ESSN 1752-9867 JRNL PMID 27326693 JRNL DOI 10.1016/J.MOLP.2016.06.002 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 89438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4576 - 4.5648 1.00 6596 137 0.1374 0.1513 REMARK 3 2 4.5648 - 3.6259 0.98 6402 145 0.1225 0.1597 REMARK 3 3 3.6259 - 3.1683 0.95 6217 140 0.1392 0.1812 REMARK 3 4 3.1683 - 2.8789 0.95 6171 143 0.1678 0.1914 REMARK 3 5 2.8789 - 2.6728 0.96 6221 148 0.1781 0.2644 REMARK 3 6 2.6728 - 2.5153 0.97 6296 148 0.1855 0.2593 REMARK 3 7 2.5153 - 2.3894 0.98 6355 136 0.1778 0.2761 REMARK 3 8 2.3894 - 2.2855 0.99 6410 139 0.1740 0.2304 REMARK 3 9 2.2855 - 2.1975 0.99 6478 153 0.1729 0.2193 REMARK 3 10 2.1975 - 2.1217 1.00 6450 138 0.1746 0.2126 REMARK 3 11 2.1217 - 2.0554 1.00 6464 154 0.1784 0.2118 REMARK 3 12 2.0554 - 1.9967 1.00 6462 136 0.1865 0.2895 REMARK 3 13 1.9967 - 1.9441 0.91 5931 140 0.2249 0.2881 REMARK 3 14 1.9441 - 1.8967 0.78 5025 103 0.2848 0.3506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 7951 REMARK 3 ANGLE : 1.332 10823 REMARK 3 CHIRALITY : 0.070 1251 REMARK 3 PLANARITY : 0.007 1397 REMARK 3 DIHEDRAL : 14.259 2921 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 2.5585 -7.0843 71.7415 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.1262 REMARK 3 T33: 0.1344 T12: -0.0082 REMARK 3 T13: -0.0177 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.4415 L22: 0.2435 REMARK 3 L33: 0.1951 L12: -0.1326 REMARK 3 L13: -0.1054 L23: 0.0785 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0196 S13: 0.0249 REMARK 3 S21: 0.0036 S22: 0.0056 S23: -0.0079 REMARK 3 S31: -0.0056 S32: 0.0208 S33: 0.0055 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.84178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 27.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 CITRATE TRIBASIC (PH 5.6), 30% PEG 4000, EVAPORATION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 58.52150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 147 REMARK 465 ASP A 148 REMARK 465 SER A 149 REMARK 465 VAL A 150 REMARK 465 VAL A 151 REMARK 465 ASP A 152 REMARK 465 SER A 153 REMARK 465 GLU A 512 REMARK 465 LYS A 513 REMARK 465 PRO A 514 REMARK 465 SER B 147 REMARK 465 ASP B 148 REMARK 465 SER B 149 REMARK 465 VAL B 150 REMARK 465 VAL B 151 REMARK 465 ASP B 152 REMARK 465 SER B 153 REMARK 465 GLU B 512 REMARK 465 LYS B 513 REMARK 465 PRO B 514 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 703 O HOH B 1063 2.03 REMARK 500 O HOH B 813 O HOH B 1028 2.08 REMARK 500 O HOH B 1003 O HOH B 1096 2.11 REMARK 500 NZ LYS B 54 O HOH B 701 2.11 REMARK 500 O HOH B 1159 O HOH B 1291 2.11 REMARK 500 O HOH A 850 O HOH A 1161 2.11 REMARK 500 O HOH B 922 O HOH B 1206 2.11 REMARK 500 O HOH B 999 O HOH B 1165 2.13 REMARK 500 O HOH B 961 O HOH B 1290 2.16 REMARK 500 O HOH A 1246 O HOH A 1249 2.17 REMARK 500 O HOH A 1069 O HOH B 714 2.17 REMARK 500 O HOH A 837 O HOH A 1190 2.18 REMARK 500 N MET A 1 O HOH A 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1161 O HOH B 1006 2557 2.15 REMARK 500 NZ LYS A 476 OE1 GLU B 419 2557 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 54 CD - CE - NZ ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 28 -71.04 -136.87 REMARK 500 PRO A 64 -175.95 -67.67 REMARK 500 LEU A 134 -80.16 -92.02 REMARK 500 ALA A 165 -31.55 -135.82 REMARK 500 LEU A 222 -68.14 -91.08 REMARK 500 SER A 289 -23.82 91.51 REMARK 500 HIS A 319 -109.82 79.13 REMARK 500 ASN A 377 68.83 -152.22 REMARK 500 LYS B 28 -74.01 -138.41 REMARK 500 PRO B 64 -176.09 -67.23 REMARK 500 LEU B 134 -80.86 -90.46 REMARK 500 ALA B 165 -32.11 -136.55 REMARK 500 LEU B 222 -66.44 -92.35 REMARK 500 SER B 289 -26.14 91.92 REMARK 500 HIS B 319 -109.31 79.67 REMARK 500 ASN B 377 71.12 -150.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1276 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1277 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1278 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1279 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1280 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1281 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B1314 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B1315 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B1316 DISTANCE = 6.51 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXD A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXD B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IE2 RELATED DB: PDB REMARK 900 RELATED ID: 5IE0 RELATED DB: PDB DBREF 5IE3 A 1 514 UNP Q9SMT7 4CLLA_ARATH 1 514 DBREF 5IE3 B 1 514 UNP Q9SMT7 4CLLA_ARATH 1 514 SEQRES 1 A 514 MET ASP SER ASP THR LEU SER GLY LEU LEU GLU ASN VAL SEQRES 2 A 514 ALA LYS LYS PHE PRO ASP ARG ARG ALA LEU SER VAL SER SEQRES 3 A 514 GLY LYS PHE ASN LEU THR HIS ALA ARG LEU HIS ASP LEU SEQRES 4 A 514 ILE GLU ARG ALA ALA SER ARG LEU VAL SER ASP ALA GLY SEQRES 5 A 514 ILE LYS PRO GLY ASP VAL VAL ALA LEU THR PHE PRO ASN SEQRES 6 A 514 THR VAL GLU PHE VAL ILE MET PHE LEU ALA VAL ILE ARG SEQRES 7 A 514 ALA ARG ALA THR ALA ALA PRO LEU ASN ALA ALA TYR THR SEQRES 8 A 514 ALA GLU GLU PHE GLU PHE TYR LEU SER ASP SER ASP SER SEQRES 9 A 514 LYS LEU LEU LEU THR SER LYS GLU GLY ASN ALA PRO ALA SEQRES 10 A 514 GLN GLU ALA ALA SER LYS LEU LYS ILE SER HIS VAL THR SEQRES 11 A 514 ALA THR LEU LEU ASP ALA GLY SER ASP LEU VAL LEU SER SEQRES 12 A 514 VAL ALA ASP SER ASP SER VAL VAL ASP SER ALA THR GLU SEQRES 13 A 514 LEU VAL ASN HIS PRO ASP ASP GLY ALA LEU PHE LEU HIS SEQRES 14 A 514 THR SER GLY THR THR SER ARG PRO LYS GLY VAL PRO LEU SEQRES 15 A 514 THR GLN LEU ASN LEU ALA SER SER VAL LYS ASN ILE LYS SEQRES 16 A 514 ALA VAL TYR LYS LEU THR GLU SER ASP SER THR VAL ILE SEQRES 17 A 514 VAL LEU PRO LEU PHE HIS VAL HIS GLY LEU LEU ALA GLY SEQRES 18 A 514 LEU LEU SER SER LEU GLY ALA GLY ALA ALA VAL THR LEU SEQRES 19 A 514 PRO ALA ALA GLY ARG PHE SER ALA THR THR PHE TRP PRO SEQRES 20 A 514 ASP MET LYS LYS TYR ASN ALA THR TRP TYR THR ALA VAL SEQRES 21 A 514 PRO THR ILE HIS GLN ILE ILE LEU ASP ARG HIS ALA SER SEQRES 22 A 514 HIS PRO GLU THR GLU TYR PRO LYS LEU ARG PHE ILE ARG SEQRES 23 A 514 SER CYS SER ALA SER LEU ALA PRO VAL ILE LEU SER ARG SEQRES 24 A 514 LEU GLU GLU ALA PHE GLY ALA PRO VAL LEU GLU ALA TYR SEQRES 25 A 514 ALA MET THR GLU ALA THR HIS LEU MET SER SER ASN PRO SEQRES 26 A 514 LEU PRO GLU GLU GLY PRO HIS LYS PRO GLY SER VAL GLY SEQRES 27 A 514 LYS PRO VAL GLY GLN GLU MET ALA ILE LEU ASN GLU LYS SEQRES 28 A 514 GLY GLU ILE GLN GLU PRO ASN ASN LYS GLY GLU VAL CYS SEQRES 29 A 514 ILE ARG GLY PRO ASN VAL THR LYS GLY TYR LYS ASN ASN SEQRES 30 A 514 PRO GLU ALA ASN LYS ALA GLY PHE GLU PHE GLY TRP PHE SEQRES 31 A 514 HIS THR GLY ASP ILE GLY TYR PHE ASP THR ASP GLY TYR SEQRES 32 A 514 LEU HIS LEU VAL GLY ARG ILE LYS GLU LEU ILE ASN ARG SEQRES 33 A 514 GLY GLY GLU LYS ILE SER PRO ILE GLU VAL ASP ALA VAL SEQRES 34 A 514 LEU LEU THR HIS PRO ASP VAL SER GLN GLY VAL ALA PHE SEQRES 35 A 514 GLY VAL PRO ASP GLU LYS TYR GLY GLU GLU ILE ASN CYS SEQRES 36 A 514 ALA VAL ILE PRO ARG GLU GLY THR THR VAL THR GLU GLU SEQRES 37 A 514 ASP ILE LYS ALA PHE CYS LYS LYS ASN LEU ALA ALA PHE SEQRES 38 A 514 LYS VAL PRO LYS ARG VAL PHE ILE THR ASP ASN LEU PRO SEQRES 39 A 514 LYS THR ALA SER GLY LYS ILE GLN ARG ARG ILE VAL ALA SEQRES 40 A 514 GLN HIS PHE LEU GLU LYS PRO SEQRES 1 B 514 MET ASP SER ASP THR LEU SER GLY LEU LEU GLU ASN VAL SEQRES 2 B 514 ALA LYS LYS PHE PRO ASP ARG ARG ALA LEU SER VAL SER SEQRES 3 B 514 GLY LYS PHE ASN LEU THR HIS ALA ARG LEU HIS ASP LEU SEQRES 4 B 514 ILE GLU ARG ALA ALA SER ARG LEU VAL SER ASP ALA GLY SEQRES 5 B 514 ILE LYS PRO GLY ASP VAL VAL ALA LEU THR PHE PRO ASN SEQRES 6 B 514 THR VAL GLU PHE VAL ILE MET PHE LEU ALA VAL ILE ARG SEQRES 7 B 514 ALA ARG ALA THR ALA ALA PRO LEU ASN ALA ALA TYR THR SEQRES 8 B 514 ALA GLU GLU PHE GLU PHE TYR LEU SER ASP SER ASP SER SEQRES 9 B 514 LYS LEU LEU LEU THR SER LYS GLU GLY ASN ALA PRO ALA SEQRES 10 B 514 GLN GLU ALA ALA SER LYS LEU LYS ILE SER HIS VAL THR SEQRES 11 B 514 ALA THR LEU LEU ASP ALA GLY SER ASP LEU VAL LEU SER SEQRES 12 B 514 VAL ALA ASP SER ASP SER VAL VAL ASP SER ALA THR GLU SEQRES 13 B 514 LEU VAL ASN HIS PRO ASP ASP GLY ALA LEU PHE LEU HIS SEQRES 14 B 514 THR SER GLY THR THR SER ARG PRO LYS GLY VAL PRO LEU SEQRES 15 B 514 THR GLN LEU ASN LEU ALA SER SER VAL LYS ASN ILE LYS SEQRES 16 B 514 ALA VAL TYR LYS LEU THR GLU SER ASP SER THR VAL ILE SEQRES 17 B 514 VAL LEU PRO LEU PHE HIS VAL HIS GLY LEU LEU ALA GLY SEQRES 18 B 514 LEU LEU SER SER LEU GLY ALA GLY ALA ALA VAL THR LEU SEQRES 19 B 514 PRO ALA ALA GLY ARG PHE SER ALA THR THR PHE TRP PRO SEQRES 20 B 514 ASP MET LYS LYS TYR ASN ALA THR TRP TYR THR ALA VAL SEQRES 21 B 514 PRO THR ILE HIS GLN ILE ILE LEU ASP ARG HIS ALA SER SEQRES 22 B 514 HIS PRO GLU THR GLU TYR PRO LYS LEU ARG PHE ILE ARG SEQRES 23 B 514 SER CYS SER ALA SER LEU ALA PRO VAL ILE LEU SER ARG SEQRES 24 B 514 LEU GLU GLU ALA PHE GLY ALA PRO VAL LEU GLU ALA TYR SEQRES 25 B 514 ALA MET THR GLU ALA THR HIS LEU MET SER SER ASN PRO SEQRES 26 B 514 LEU PRO GLU GLU GLY PRO HIS LYS PRO GLY SER VAL GLY SEQRES 27 B 514 LYS PRO VAL GLY GLN GLU MET ALA ILE LEU ASN GLU LYS SEQRES 28 B 514 GLY GLU ILE GLN GLU PRO ASN ASN LYS GLY GLU VAL CYS SEQRES 29 B 514 ILE ARG GLY PRO ASN VAL THR LYS GLY TYR LYS ASN ASN SEQRES 30 B 514 PRO GLU ALA ASN LYS ALA GLY PHE GLU PHE GLY TRP PHE SEQRES 31 B 514 HIS THR GLY ASP ILE GLY TYR PHE ASP THR ASP GLY TYR SEQRES 32 B 514 LEU HIS LEU VAL GLY ARG ILE LYS GLU LEU ILE ASN ARG SEQRES 33 B 514 GLY GLY GLU LYS ILE SER PRO ILE GLU VAL ASP ALA VAL SEQRES 34 B 514 LEU LEU THR HIS PRO ASP VAL SER GLN GLY VAL ALA PHE SEQRES 35 B 514 GLY VAL PRO ASP GLU LYS TYR GLY GLU GLU ILE ASN CYS SEQRES 36 B 514 ALA VAL ILE PRO ARG GLU GLY THR THR VAL THR GLU GLU SEQRES 37 B 514 ASP ILE LYS ALA PHE CYS LYS LYS ASN LEU ALA ALA PHE SEQRES 38 B 514 LYS VAL PRO LYS ARG VAL PHE ILE THR ASP ASN LEU PRO SEQRES 39 B 514 LYS THR ALA SER GLY LYS ILE GLN ARG ARG ILE VAL ALA SEQRES 40 B 514 GLN HIS PHE LEU GLU LYS PRO HET AMP A 601 23 HET OXD A 602 6 HET AMP B 601 23 HET OXD B 602 6 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM OXD OXALIC ACID FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 OXD 2(C2 H2 O4) FORMUL 7 HOH *1197(H2 O) HELIX 1 AA1 THR A 5 PHE A 17 1 13 HELIX 2 AA2 HIS A 33 ALA A 51 1 19 HELIX 3 AA3 THR A 66 ALA A 79 1 14 HELIX 4 AA4 THR A 91 SER A 102 1 12 HELIX 5 AA5 ASN A 114 LEU A 124 1 11 HELIX 6 AA6 GLN A 184 LYS A 199 1 16 HELIX 7 AA7 HIS A 214 ALA A 220 1 7 HELIX 8 AA8 LEU A 222 ALA A 228 1 7 HELIX 9 AA9 SER A 241 TYR A 252 1 12 HELIX 10 AB1 VAL A 260 HIS A 274 1 15 HELIX 11 AB2 ALA A 293 GLY A 305 1 13 HELIX 12 AB3 THR A 315 THR A 318 5 4 HELIX 13 AB4 ASN A 377 GLY A 384 1 8 HELIX 14 AB5 LYS A 411 LEU A 413 5 3 HELIX 15 AB6 SER A 422 LEU A 431 1 10 HELIX 16 AB7 THR A 466 LEU A 478 1 13 HELIX 17 AB8 ALA A 479 VAL A 483 5 5 HELIX 18 AB9 GLN A 502 LEU A 511 1 10 HELIX 19 AC1 THR B 5 PHE B 17 1 13 HELIX 20 AC2 HIS B 33 ALA B 51 1 19 HELIX 21 AC3 THR B 66 ALA B 79 1 14 HELIX 22 AC4 THR B 91 SER B 102 1 12 HELIX 23 AC5 ASN B 114 LEU B 124 1 11 HELIX 24 AC6 GLN B 184 LYS B 199 1 16 HELIX 25 AC7 HIS B 214 ALA B 220 1 7 HELIX 26 AC8 LEU B 222 ALA B 228 1 7 HELIX 27 AC9 THR B 244 TYR B 252 1 9 HELIX 28 AD1 VAL B 260 HIS B 274 1 15 HELIX 29 AD2 ALA B 293 GLY B 305 1 13 HELIX 30 AD3 THR B 315 THR B 318 5 4 HELIX 31 AD4 ASN B 377 GLY B 384 1 8 HELIX 32 AD5 LYS B 411 LEU B 413 5 3 HELIX 33 AD6 SER B 422 LEU B 431 1 10 HELIX 34 AD7 THR B 466 LEU B 478 1 13 HELIX 35 AD8 ALA B 479 VAL B 483 5 5 HELIX 36 AD9 GLN B 502 LEU B 511 1 10 SHEET 1 AA1 4 PHE A 29 THR A 32 0 SHEET 2 AA1 4 ARG A 21 VAL A 25 -1 N LEU A 23 O LEU A 31 SHEET 3 AA1 4 ALA A 231 LEU A 234 1 O VAL A 232 N SER A 24 SHEET 4 AA1 4 SER A 205 VAL A 207 1 N THR A 206 O THR A 233 SHEET 1 AA2 5 THR A 82 PRO A 85 0 SHEET 2 AA2 5 VAL A 58 LEU A 61 1 N VAL A 59 O THR A 82 SHEET 3 AA2 5 SER A 104 SER A 110 1 O LYS A 105 N VAL A 58 SHEET 4 AA2 5 SER A 127 THR A 132 1 O VAL A 129 N LEU A 107 SHEET 5 AA2 5 VAL A 141 LEU A 142 -1 O VAL A 141 N THR A 132 SHEET 1 AA3 2 GLY A 164 HIS A 169 0 SHEET 2 AA3 2 GLY A 179 THR A 183 -1 O LEU A 182 N LEU A 166 SHEET 1 AA4 5 TRP A 256 ALA A 259 0 SHEET 2 AA4 5 PHE A 284 SER A 287 1 O ARG A 286 N TYR A 257 SHEET 3 AA4 5 VAL A 308 MET A 314 1 O ALA A 311 N SER A 287 SHEET 4 AA4 5 HIS A 319 SER A 323 -1 O MET A 321 N TYR A 312 SHEET 5 AA4 5 LYS A 339 PRO A 340 -1 O LYS A 339 N SER A 323 SHEET 1 AA5 4 GLU A 344 LEU A 348 0 SHEET 2 AA5 4 GLY A 361 ARG A 366 -1 O GLU A 362 N LEU A 348 SHEET 3 AA5 4 TRP A 389 PHE A 398 -1 O PHE A 390 N ILE A 365 SHEET 4 AA5 4 PHE A 385 GLU A 386 -1 N GLU A 386 O TRP A 389 SHEET 1 AA6 4 GLU A 344 LEU A 348 0 SHEET 2 AA6 4 GLY A 361 ARG A 366 -1 O GLU A 362 N LEU A 348 SHEET 3 AA6 4 TRP A 389 PHE A 398 -1 O PHE A 390 N ILE A 365 SHEET 4 AA6 4 LEU A 404 ARG A 409 -1 O VAL A 407 N ILE A 395 SHEET 1 AA7 2 ILE A 414 ARG A 416 0 SHEET 2 AA7 2 GLU A 419 ILE A 421 -1 O ILE A 421 N ILE A 414 SHEET 1 AA8 3 VAL A 436 ASP A 446 0 SHEET 2 AA8 3 GLY A 450 PRO A 459 -1 O ILE A 458 N SER A 437 SHEET 3 AA8 3 ARG A 486 ILE A 489 1 O PHE A 488 N CYS A 455 SHEET 1 AA9 4 PHE B 29 THR B 32 0 SHEET 2 AA9 4 ARG B 21 VAL B 25 -1 N LEU B 23 O LEU B 31 SHEET 3 AA9 4 ALA B 231 LEU B 234 1 O VAL B 232 N SER B 24 SHEET 4 AA9 4 SER B 205 VAL B 207 1 N THR B 206 O THR B 233 SHEET 1 AB1 5 THR B 82 PRO B 85 0 SHEET 2 AB1 5 VAL B 58 THR B 62 1 N VAL B 59 O THR B 82 SHEET 3 AB1 5 SER B 104 THR B 109 1 O LYS B 105 N VAL B 58 SHEET 4 AB1 5 SER B 127 THR B 132 1 O VAL B 129 N LEU B 107 SHEET 5 AB1 5 VAL B 141 LEU B 142 -1 O VAL B 141 N THR B 132 SHEET 1 AB2 2 GLY B 164 HIS B 169 0 SHEET 2 AB2 2 GLY B 179 THR B 183 -1 O VAL B 180 N LEU B 168 SHEET 1 AB3 5 TRP B 256 ALA B 259 0 SHEET 2 AB3 5 PHE B 284 SER B 287 1 O ARG B 286 N TYR B 257 SHEET 3 AB3 5 VAL B 308 MET B 314 1 O ALA B 311 N SER B 287 SHEET 4 AB3 5 HIS B 319 SER B 323 -1 O MET B 321 N TYR B 312 SHEET 5 AB3 5 LYS B 339 PRO B 340 -1 O LYS B 339 N SER B 323 SHEET 1 AB4 4 GLU B 344 LEU B 348 0 SHEET 2 AB4 4 GLY B 361 ARG B 366 -1 O ARG B 366 N GLU B 344 SHEET 3 AB4 4 TRP B 389 PHE B 398 -1 O PHE B 390 N ILE B 365 SHEET 4 AB4 4 PHE B 385 GLU B 386 -1 N GLU B 386 O TRP B 389 SHEET 1 AB5 4 GLU B 344 LEU B 348 0 SHEET 2 AB5 4 GLY B 361 ARG B 366 -1 O ARG B 366 N GLU B 344 SHEET 3 AB5 4 TRP B 389 PHE B 398 -1 O PHE B 390 N ILE B 365 SHEET 4 AB5 4 LEU B 404 ARG B 409 -1 O VAL B 407 N ILE B 395 SHEET 1 AB6 2 ILE B 414 ARG B 416 0 SHEET 2 AB6 2 GLU B 419 ILE B 421 -1 O GLU B 419 N ARG B 416 SHEET 1 AB7 3 VAL B 436 ASP B 446 0 SHEET 2 AB7 3 GLY B 450 PRO B 459 -1 O ILE B 458 N SER B 437 SHEET 3 AB7 3 ARG B 486 ILE B 489 1 O PHE B 488 N CYS B 455 SITE 1 AC1 21 SER A 171 SER A 289 ALA A 290 SER A 291 SITE 2 AC1 21 GLU A 310 ALA A 311 ALA A 313 MET A 314 SITE 3 AC1 21 THR A 315 VAL A 337 ASP A 394 LEU A 406 SITE 4 AC1 21 ARG A 409 LYS A 500 OXD A 602 HOH A 707 SITE 5 AC1 21 HOH A 713 HOH A 718 HOH A 860 HOH A 895 SITE 6 AC1 21 HOH A 930 SITE 1 AC2 9 VAL A 215 HIS A 216 SER A 289 ALA A 313 SITE 2 AC2 9 MET A 314 THR A 315 HIS A 319 LYS A 500 SITE 3 AC2 9 AMP A 601 SITE 1 AC3 22 SER B 171 SER B 289 ALA B 290 SER B 291 SITE 2 AC3 22 GLU B 310 ALA B 311 ALA B 313 MET B 314 SITE 3 AC3 22 THR B 315 VAL B 337 ASP B 394 LEU B 406 SITE 4 AC3 22 ARG B 409 LYS B 500 OXD B 602 HOH B 709 SITE 5 AC3 22 HOH B 717 HOH B 727 HOH B 831 HOH B 836 SITE 6 AC3 22 HOH B 914 HOH B 934 SITE 1 AC4 9 VAL B 215 HIS B 216 SER B 289 ALA B 313 SITE 2 AC4 9 MET B 314 THR B 315 HIS B 319 LYS B 500 SITE 3 AC4 9 AMP B 601 CRYST1 71.193 117.043 72.062 90.00 93.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014046 0.000000 0.000882 0.00000 SCALE2 0.000000 0.008544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013904 0.00000