HEADER HYDROLASE 25-FEB-16 5IE9 TITLE CRYSTAL STRUCTURE OF THE BACILLUS-CONSERVED MAZG PROTEIN, A NUCLEOTIDE TITLE 2 PYROPHOSPHOHYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOTIDE PYROPHOSPHOHYDROLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 20-122; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 STRAIN: ATCC 14579; SOURCE 5 GENE: TQ94_28555; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS MAZG, NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KIM,M.HONG REVDAT 3 08-NOV-23 5IE9 1 REMARK REVDAT 2 30-AUG-17 5IE9 1 JRNL REMARK REVDAT 1 30-MAR-16 5IE9 0 JRNL AUTH M.I.KIM,M.HONG JRNL TITL CRYSTAL STRUCTURE OF THE BACILLUS-CONSERVED MAZG PROTEIN, A JRNL TITL 2 NUCLEOTIDE PYROPHOSPHOHYDROLASE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 472 237 2016 JRNL REFN ESSN 1090-2104 JRNL PMID 26920050 JRNL DOI 10.1016/J.BBRC.2016.02.097 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 20632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1059 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1505 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : -0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.366 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2984 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3998 ; 1.318 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 367 ; 4.738 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;37.257 ;25.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;20.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.319 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2234 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1491 ; 0.955 ; 4.599 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1849 ; 1.677 ; 6.890 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1493 ; 1.378 ; 4.647 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0820 -25.3660 14.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.8204 T22: 0.5724 REMARK 3 T33: 0.1865 T12: -0.2344 REMARK 3 T13: 0.0555 T23: 0.1344 REMARK 3 L TENSOR REMARK 3 L11: 2.4203 L22: 8.4916 REMARK 3 L33: 1.2113 L12: 1.5742 REMARK 3 L13: 0.2543 L23: -2.5022 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: -0.3513 S13: -0.1058 REMARK 3 S21: 0.8457 S22: 0.0341 S23: 0.2503 REMARK 3 S31: -0.0124 S32: -0.0030 S33: -0.0619 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): -28.3970 -15.4910 -1.7210 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.3313 REMARK 3 T33: 0.0838 T12: -0.1808 REMARK 3 T13: 0.0096 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 12.9206 L22: 15.4752 REMARK 3 L33: 1.7911 L12: -10.7113 REMARK 3 L13: 1.9250 L23: 0.4537 REMARK 3 S TENSOR REMARK 3 S11: 0.3147 S12: -0.5173 S13: -0.5923 REMARK 3 S21: -0.2520 S22: -0.2017 S23: 0.8152 REMARK 3 S31: 0.2149 S32: -0.4739 S33: -0.1130 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1460 -14.3950 9.4350 REMARK 3 T TENSOR REMARK 3 T11: 0.3572 T22: 0.3566 REMARK 3 T33: 0.0073 T12: -0.3213 REMARK 3 T13: -0.0078 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 7.0733 L22: 8.2059 REMARK 3 L33: 3.6893 L12: -0.0242 REMARK 3 L13: 2.3423 L23: 0.7927 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.1671 S13: -0.0079 REMARK 3 S21: 0.5935 S22: -0.0337 S23: -0.1758 REMARK 3 S31: 0.0316 S32: 0.1686 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8010 8.3360 15.2940 REMARK 3 T TENSOR REMARK 3 T11: 0.8342 T22: 0.5765 REMARK 3 T33: 0.6962 T12: -0.2702 REMARK 3 T13: -0.0206 T23: -0.0739 REMARK 3 L TENSOR REMARK 3 L11: 0.0164 L22: 1.1145 REMARK 3 L33: 10.6789 L12: 0.0903 REMARK 3 L13: 0.3070 L23: 3.4294 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: -0.0505 S13: -0.0176 REMARK 3 S21: -0.2412 S22: -0.0016 S23: -0.0387 REMARK 3 S31: -0.5225 S32: -0.2554 S33: -0.0558 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 25 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1050 -0.7150 14.5520 REMARK 3 T TENSOR REMARK 3 T11: 0.6795 T22: 0.4901 REMARK 3 T33: 0.2412 T12: -0.3134 REMARK 3 T13: -0.0471 T23: -0.1282 REMARK 3 L TENSOR REMARK 3 L11: 6.2496 L22: 4.2587 REMARK 3 L33: 4.7568 L12: -0.1120 REMARK 3 L13: 0.0463 L23: 1.5666 REMARK 3 S TENSOR REMARK 3 S11: -0.3072 S12: -0.3897 S13: 0.2487 REMARK 3 S21: 0.7642 S22: 0.0196 S23: -0.5509 REMARK 3 S31: -0.4652 S32: -0.2223 S33: 0.2877 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): -15.7210 -11.4650 -1.0600 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.3537 REMARK 3 T33: 0.0849 T12: -0.1782 REMARK 3 T13: -0.0269 T23: 0.0603 REMARK 3 L TENSOR REMARK 3 L11: 10.2140 L22: 14.7220 REMARK 3 L33: 1.9133 L12: -8.6422 REMARK 3 L13: -1.9515 L23: -0.2263 REMARK 3 S TENSOR REMARK 3 S11: 0.1184 S12: -0.5833 S13: 0.4864 REMARK 3 S21: 0.0270 S22: -0.1198 S23: -0.9801 REMARK 3 S31: -0.2729 S32: 0.5267 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 64 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): -26.2610 -11.8290 10.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.3699 T22: 0.3880 REMARK 3 T33: 0.0491 T12: -0.3111 REMARK 3 T13: 0.0307 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 5.6205 L22: 10.5840 REMARK 3 L33: 3.5009 L12: 0.2298 REMARK 3 L13: -1.0971 L23: -1.7768 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: -0.1270 S13: 0.1162 REMARK 3 S21: 0.6377 S22: 0.1210 S23: 0.5671 REMARK 3 S31: -0.0710 S32: -0.0800 S33: -0.0729 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 97 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): -35.2800 -35.9560 16.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.8478 T22: 0.6353 REMARK 3 T33: 0.9590 T12: -0.2155 REMARK 3 T13: 0.0819 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.9505 L22: 0.5656 REMARK 3 L33: 30.1520 L12: 1.4211 REMARK 3 L13: -10.8465 L23: -4.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: -0.2559 S13: 0.1616 REMARK 3 S21: -0.1473 S22: 0.0491 S23: -0.0350 REMARK 3 S31: 0.4026 S32: 0.5071 S33: -0.0659 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 23 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7530 -18.3860 -27.6230 REMARK 3 T TENSOR REMARK 3 T11: 0.1877 T22: 0.7228 REMARK 3 T33: 0.0899 T12: -0.0822 REMARK 3 T13: 0.1259 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 16.5980 L22: 6.4896 REMARK 3 L33: 7.9868 L12: -5.0694 REMARK 3 L13: 4.7929 L23: -0.1964 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: 1.0035 S13: 0.2159 REMARK 3 S21: -0.6484 S22: -0.3569 S23: -0.5204 REMARK 3 S31: 0.4345 S32: 0.3006 S33: 0.4071 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 24 C 49 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9270 -10.8440 -10.9650 REMARK 3 T TENSOR REMARK 3 T11: 0.2165 T22: 0.4688 REMARK 3 T33: 0.1704 T12: -0.2071 REMARK 3 T13: -0.0161 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 6.2403 L22: 13.6439 REMARK 3 L33: 3.4261 L12: -5.9711 REMARK 3 L13: 0.6431 L23: 4.5375 REMARK 3 S TENSOR REMARK 3 S11: -0.5565 S12: 0.1929 S13: 0.4865 REMARK 3 S21: 0.2321 S22: 0.9646 S23: -1.1262 REMARK 3 S31: -0.2611 S32: 0.7317 S33: -0.4081 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 50 C 96 REMARK 3 ORIGIN FOR THE GROUP (A): -22.7840 -14.3660 -20.9200 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.7094 REMARK 3 T33: 0.0318 T12: -0.1510 REMARK 3 T13: 0.0234 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 5.1448 L22: 5.5672 REMARK 3 L33: 2.9703 L12: -0.7253 REMARK 3 L13: 1.4264 L23: -0.5579 REMARK 3 S TENSOR REMARK 3 S11: 0.2137 S12: 0.7926 S13: -0.0561 REMARK 3 S21: -0.0715 S22: -0.2972 S23: 0.1683 REMARK 3 S31: 0.0272 S32: 0.0107 S33: 0.0835 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 97 C 103 REMARK 3 ORIGIN FOR THE GROUP (A): -48.9250 -13.3170 -28.3590 REMARK 3 T TENSOR REMARK 3 T11: 0.5411 T22: 0.7803 REMARK 3 T33: 0.7942 T12: 0.0140 REMARK 3 T13: 0.0575 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 5.1452 L22: 0.7604 REMARK 3 L33: 23.6155 L12: 1.0524 REMARK 3 L13: 10.9373 L23: 2.6539 REMARK 3 S TENSOR REMARK 3 S11: 0.2428 S12: 0.0216 S13: -0.0700 REMARK 3 S21: -0.2983 S22: 0.1958 S23: -0.5246 REMARK 3 S31: 0.1288 S32: 0.1289 S33: -0.4387 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 25 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5330 -7.2630 -26.6010 REMARK 3 T TENSOR REMARK 3 T11: 0.1791 T22: 0.8271 REMARK 3 T33: 0.0961 T12: -0.0989 REMARK 3 T13: -0.1175 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 8.9311 L22: 5.7865 REMARK 3 L33: 6.7307 L12: 1.8682 REMARK 3 L13: -1.6267 L23: -0.4213 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.5452 S13: -0.1655 REMARK 3 S21: -0.4583 S22: -0.2446 S23: 0.4791 REMARK 3 S31: -0.2005 S32: -0.2885 S33: 0.2491 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 26 D 49 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5800 -16.6450 -10.2270 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.3070 REMARK 3 T33: 0.0864 T12: -0.1737 REMARK 3 T13: 0.0103 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 4.6672 L22: 19.5683 REMARK 3 L33: 2.8143 L12: -6.4801 REMARK 3 L13: -1.2777 L23: -0.9812 REMARK 3 S TENSOR REMARK 3 S11: -0.2491 S12: 0.1383 S13: -0.3151 REMARK 3 S21: 0.0545 S22: 0.4739 S23: 0.5153 REMARK 3 S31: 0.3470 S32: -0.4879 S33: -0.2248 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 50 D 95 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0780 -10.4670 -21.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.6645 REMARK 3 T33: 0.0396 T12: -0.1672 REMARK 3 T13: -0.0184 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 6.9489 L22: 6.9826 REMARK 3 L33: 4.4539 L12: -1.1024 REMARK 3 L13: -2.4764 L23: -1.4207 REMARK 3 S TENSOR REMARK 3 S11: 0.2351 S12: 0.7250 S13: 0.1815 REMARK 3 S21: -0.3076 S22: -0.1962 S23: -0.1764 REMARK 3 S31: -0.1688 S32: -0.2272 S33: -0.0388 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 96 D 103 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1730 -12.7940 -27.2240 REMARK 3 T TENSOR REMARK 3 T11: 0.3489 T22: 0.7829 REMARK 3 T33: 0.6318 T12: 0.0984 REMARK 3 T13: 0.1660 T23: -0.0806 REMARK 3 L TENSOR REMARK 3 L11: 1.5129 L22: 0.8431 REMARK 3 L33: 14.9691 L12: 1.1189 REMARK 3 L13: -4.7369 L23: -3.5473 REMARK 3 S TENSOR REMARK 3 S11: 0.0876 S12: 0.1299 S13: 0.1381 REMARK 3 S21: 0.0033 S22: 0.1295 S23: 0.0377 REMARK 3 S31: -0.0815 S32: -0.4126 S33: -0.2171 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5IE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 83 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GTA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1MM SODIUM CACODYLATE PH 6.5, 1M REMARK 280 SODIUM CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.70400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.35200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 51 REMARK 465 LYS A 52 REMARK 465 PRO A 53 REMARK 465 LYS A 54 REMARK 465 LYS A 55 REMARK 465 THR A 56 REMARK 465 THR A 57 REMARK 465 GLU A 58 REMARK 465 LYS A 59 REMARK 465 GLU B 51 REMARK 465 LYS B 52 REMARK 465 PRO B 53 REMARK 465 LYS B 54 REMARK 465 LYS B 55 REMARK 465 THR B 56 REMARK 465 THR B 57 REMARK 465 GLU B 58 REMARK 465 LYS B 59 REMARK 465 LYS C 52 REMARK 465 PRO C 53 REMARK 465 LYS C 54 REMARK 465 LYS C 55 REMARK 465 THR C 56 REMARK 465 THR C 57 REMARK 465 GLU C 58 REMARK 465 LYS C 59 REMARK 465 GLU D 51 REMARK 465 LYS D 52 REMARK 465 PRO D 53 REMARK 465 LYS D 54 REMARK 465 LYS D 55 REMARK 465 THR D 56 REMARK 465 THR D 57 REMARK 465 GLU D 58 REMARK 465 LYS D 59 REMARK 465 GLU D 60 REMARK 465 ARG D 61 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 11 CE NZ REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 470 MET C 1 CG SD CE REMARK 470 GLU C 2 CG CD OE1 OE2 REMARK 470 LYS C 11 CE NZ REMARK 470 GLU C 60 O CG CD OE1 OE2 REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 95 CG CD CE NZ REMARK 470 MET D 1 CG SD CE REMARK 470 LYS D 11 CE NZ REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 LYS D 95 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 97 99.43 -65.34 REMARK 500 GLU B 2 -77.91 -80.10 REMARK 500 ASN C 97 105.91 -54.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 OE1 REMARK 620 2 GLU A 66 OE1 96.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 37 OE1 REMARK 620 2 GLU B 66 OE1 113.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 201 DBREF1 5IE9 A 1 103 UNP A0A0A3VU53_BACCE DBREF2 5IE9 A A0A0A3VU53 11 113 DBREF1 5IE9 B 1 103 UNP A0A0A3VU53_BACCE DBREF2 5IE9 B A0A0A3VU53 11 113 DBREF1 5IE9 C 1 103 UNP A0A0A3VU53_BACCE DBREF2 5IE9 C A0A0A3VU53 11 113 DBREF1 5IE9 D 1 103 UNP A0A0A3VU53_BACCE DBREF2 5IE9 D A0A0A3VU53 11 113 SEQRES 1 A 103 MET GLU ALA LYS THR MET LYS ASP MET GLN LYS GLU VAL SEQRES 2 A 103 ASP ALA TYR ILE GLY GLN PHE LYS GLU GLY TYR PHE SER SEQRES 3 A 103 PRO LEU ALA MET MET ALA ARG LEU THR GLU GLU MET GLY SEQRES 4 A 103 GLU LEU ALA ARG GLU VAL ASN HIS TYR TYR GLY GLU LYS SEQRES 5 A 103 PRO LYS LYS THR THR GLU LYS GLU ARG SER ILE GLU GLU SEQRES 6 A 103 GLU LEU GLY ASP VAL LEU PHE VAL MET ILE CYS MET ALA SEQRES 7 A 103 ASN SER LEU ASN ILE ASP LEU GLU THR ALA HIS ASN ILE SEQRES 8 A 103 VAL MET ASN LYS PHE ASN THR ARG ASP LYS ASP ARG SEQRES 1 B 103 MET GLU ALA LYS THR MET LYS ASP MET GLN LYS GLU VAL SEQRES 2 B 103 ASP ALA TYR ILE GLY GLN PHE LYS GLU GLY TYR PHE SER SEQRES 3 B 103 PRO LEU ALA MET MET ALA ARG LEU THR GLU GLU MET GLY SEQRES 4 B 103 GLU LEU ALA ARG GLU VAL ASN HIS TYR TYR GLY GLU LYS SEQRES 5 B 103 PRO LYS LYS THR THR GLU LYS GLU ARG SER ILE GLU GLU SEQRES 6 B 103 GLU LEU GLY ASP VAL LEU PHE VAL MET ILE CYS MET ALA SEQRES 7 B 103 ASN SER LEU ASN ILE ASP LEU GLU THR ALA HIS ASN ILE SEQRES 8 B 103 VAL MET ASN LYS PHE ASN THR ARG ASP LYS ASP ARG SEQRES 1 C 103 MET GLU ALA LYS THR MET LYS ASP MET GLN LYS GLU VAL SEQRES 2 C 103 ASP ALA TYR ILE GLY GLN PHE LYS GLU GLY TYR PHE SER SEQRES 3 C 103 PRO LEU ALA MET MET ALA ARG LEU THR GLU GLU MET GLY SEQRES 4 C 103 GLU LEU ALA ARG GLU VAL ASN HIS TYR TYR GLY GLU LYS SEQRES 5 C 103 PRO LYS LYS THR THR GLU LYS GLU ARG SER ILE GLU GLU SEQRES 6 C 103 GLU LEU GLY ASP VAL LEU PHE VAL MET ILE CYS MET ALA SEQRES 7 C 103 ASN SER LEU ASN ILE ASP LEU GLU THR ALA HIS ASN ILE SEQRES 8 C 103 VAL MET ASN LYS PHE ASN THR ARG ASP LYS ASP ARG SEQRES 1 D 103 MET GLU ALA LYS THR MET LYS ASP MET GLN LYS GLU VAL SEQRES 2 D 103 ASP ALA TYR ILE GLY GLN PHE LYS GLU GLY TYR PHE SER SEQRES 3 D 103 PRO LEU ALA MET MET ALA ARG LEU THR GLU GLU MET GLY SEQRES 4 D 103 GLU LEU ALA ARG GLU VAL ASN HIS TYR TYR GLY GLU LYS SEQRES 5 D 103 PRO LYS LYS THR THR GLU LYS GLU ARG SER ILE GLU GLU SEQRES 6 D 103 GLU LEU GLY ASP VAL LEU PHE VAL MET ILE CYS MET ALA SEQRES 7 D 103 ASN SER LEU ASN ILE ASP LEU GLU THR ALA HIS ASN ILE SEQRES 8 D 103 VAL MET ASN LYS PHE ASN THR ARG ASP LYS ASP ARG HET MN A 201 1 HET MN B 201 1 HET MN C 201 1 HET MN D 201 1 HETNAM MN MANGANESE (II) ION FORMUL 5 MN 4(MN 2+) HELIX 1 AA1 THR A 5 GLN A 19 1 15 HELIX 2 AA2 SER A 26 GLY A 50 1 25 HELIX 3 AA3 ARG A 61 LEU A 81 1 21 HELIX 4 AA4 ASP A 84 ASN A 97 1 14 HELIX 5 AA5 THR B 5 GLY B 18 1 14 HELIX 6 AA6 SER B 26 GLY B 50 1 25 HELIX 7 AA7 ARG B 61 LEU B 81 1 21 HELIX 8 AA8 ASP B 84 ASN B 97 1 14 HELIX 9 AA9 THR C 5 GLY C 18 1 14 HELIX 10 AB1 SER C 26 GLY C 50 1 25 HELIX 11 AB2 ARG C 61 LEU C 81 1 21 HELIX 12 AB3 ASP C 84 ASN C 97 1 14 HELIX 13 AB4 THR D 5 GLY D 18 1 14 HELIX 14 AB5 SER D 26 GLY D 50 1 25 HELIX 15 AB6 ILE D 63 LEU D 81 1 19 HELIX 16 AB7 ASP D 84 ASN D 97 1 14 LINK OE1 GLU A 37 MN MN A 201 1555 1555 2.69 LINK OE1 GLU A 66 MN MN A 201 1555 1555 2.22 LINK OE1 GLU B 37 MN MN B 201 1555 1555 2.64 LINK OE1 GLU B 66 MN MN B 201 1555 1555 2.12 LINK OE1 GLU C 66 MN MN C 201 1555 1555 2.15 LINK OE1 GLU D 66 MN MN D 201 1555 1555 2.12 CISPEP 1 GLU B 2 ALA B 3 0 -6.09 CISPEP 2 GLU C 2 ALA C 3 0 -2.84 CISPEP 3 GLU D 2 ALA D 3 0 -6.56 SITE 1 AC1 4 GLU A 37 GLU A 40 GLU A 66 ASP A 69 SITE 1 AC2 4 GLU B 37 GLU B 40 GLU B 66 ASP B 69 SITE 1 AC3 5 GLU C 37 GLU C 40 LEU C 41 GLU C 66 SITE 2 AC3 5 ASP C 69 SITE 1 AC4 4 GLU D 37 GLU D 40 GLU D 66 ASP D 69 CRYST1 90.578 90.578 97.056 90.00 90.00 120.00 P 32 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011040 0.006374 0.000000 0.00000 SCALE2 0.000000 0.012748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010303 0.00000