HEADER APOPTOSIS/APOPTOSIS INHIBITOR 25-FEB-16 5IF4
TITLE DISCOVERY OF POTENT MYELOID CELL LEUKEMIA-1 (MCL-1) INHIBITORS USING
TITLE 2 STRUCTURE-BASED DESIGN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-
COMPND 3 1;
COMPND 4 CHAIN: A, B;
COMPND 5 FRAGMENT: UNP RESIDUES 172-327;
COMPND 6 SYNONYM: BCL-2-LIKE PROTEIN 3,BCL2-L-3,BCL-2-RELATED PROTEIN
COMPND 7 EAT/MCL1,MCL1/EAT;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MCL1, BCL2L3;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333
KEYWDS MYELOID CELL LEUKEMIA-1, BCL-2, APOPTOSIS, APOPTOSIS-APOPTOSIS
KEYWDS 2 INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR B.ZHAO
REVDAT 5 06-MAR-24 5IF4 1 REMARK
REVDAT 4 04-DEC-19 5IF4 1 REMARK
REVDAT 3 20-SEP-17 5IF4 1 REMARK
REVDAT 2 25-JAN-17 5IF4 1 JRNL
REVDAT 1 18-JAN-17 5IF4 0
JRNL AUTH T.LEE,Z.BIAN,B.ZHAO,L.J.HOGDAL,J.L.SENSINTAFFAR,C.M.GOODWIN,
JRNL AUTH 2 J.BELMAR,S.SHAW,J.C.TARR,N.VEERASAMY,S.M.MATULIS,B.KOSS,
JRNL AUTH 3 M.A.FISCHER,A.L.ARNOLD,D.V.CAMPER,C.F.BROWNING,
JRNL AUTH 4 O.W.ROSSANESE,A.BUDHRAJA,J.OPFERMAN,L.H.BOISE,M.R.SAVONA,
JRNL AUTH 5 A.LETAI,E.T.OLEJNICZAK,S.W.FESIK
JRNL TITL DISCOVERY AND BIOLOGICAL CHARACTERIZATION OF POTENT MYELOID
JRNL TITL 2 CELL LEUKEMIA-1 INHIBITORS.
JRNL REF FEBS LETT. V. 591 240 2017
JRNL REFN ISSN 1873-3468
JRNL PMID 27878989
JRNL DOI 10.1002/1873-3468.12497
REMARK 2
REMARK 2 RESOLUTION. 2.39 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (1.10_2155: ???)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450
REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9
REMARK 3 NUMBER OF REFLECTIONS : 13642
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.162
REMARK 3 R VALUE (WORKING SET) : 0.156
REMARK 3 FREE R VALUE : 0.218
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010
REMARK 3 FREE R VALUE TEST SET COUNT : 1365
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 29.3076 - 5.1453 0.99 1311 147 0.1430 0.1821
REMARK 3 2 5.1453 - 4.0875 0.97 1284 142 0.1291 0.1791
REMARK 3 3 4.0875 - 3.5718 0.98 1267 141 0.1363 0.1877
REMARK 3 4 3.5718 - 3.2457 0.97 1277 142 0.1577 0.2254
REMARK 3 5 3.2457 - 3.0133 0.95 1228 136 0.1601 0.2358
REMARK 3 6 3.0133 - 2.8358 0.94 1216 135 0.1758 0.2437
REMARK 3 7 2.8358 - 2.6939 0.92 1205 134 0.1808 0.2752
REMARK 3 8 2.6939 - 2.5767 0.92 1188 132 0.1885 0.2568
REMARK 3 9 2.5767 - 2.4776 0.89 1162 130 0.1927 0.2938
REMARK 3 10 2.4776 - 2.3921 0.87 1139 126 0.2074 0.2928
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.220
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 2577
REMARK 3 ANGLE : 1.070 3489
REMARK 3 CHIRALITY : 0.056 375
REMARK 3 PLANARITY : 0.009 437
REMARK 3 DIHEDRAL : 18.040 1495
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 11
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 202 )
REMARK 3 ORIGIN FOR THE GROUP (A): 2.0008 5.2744 2.6541
REMARK 3 T TENSOR
REMARK 3 T11: 0.3502 T22: 0.2887
REMARK 3 T33: 0.2633 T12: -0.0246
REMARK 3 T13: 0.0100 T23: 0.0308
REMARK 3 L TENSOR
REMARK 3 L11: 0.4376 L22: 3.9983
REMARK 3 L33: 3.5504 L12: 1.3702
REMARK 3 L13: -0.7016 L23: -1.7950
REMARK 3 S TENSOR
REMARK 3 S11: 0.0470 S12: 0.3547 S13: 0.3006
REMARK 3 S21: -0.1902 S22: 0.1995 S23: -0.0530
REMARK 3 S31: -0.4984 S32: -0.1422 S33: -0.1189
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 235 )
REMARK 3 ORIGIN FOR THE GROUP (A): 5.9670 -2.5075 13.8499
REMARK 3 T TENSOR
REMARK 3 T11: 0.1752 T22: 0.3921
REMARK 3 T33: 0.1860 T12: -0.0120
REMARK 3 T13: 0.0139 T23: -0.0032
REMARK 3 L TENSOR
REMARK 3 L11: 2.8729 L22: 8.7201
REMARK 3 L33: 4.1514 L12: -0.2881
REMARK 3 L13: -0.9722 L23: -0.6035
REMARK 3 S TENSOR
REMARK 3 S11: 0.0211 S12: -0.3213 S13: 0.1263
REMARK 3 S21: -0.0351 S22: 0.0247 S23: -0.8206
REMARK 3 S31: -0.1144 S32: 0.5933 S33: 0.0461
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 246 )
REMARK 3 ORIGIN FOR THE GROUP (A): -2.8116 -16.0227 1.8682
REMARK 3 T TENSOR
REMARK 3 T11: 0.6016 T22: 0.4065
REMARK 3 T33: 0.3542 T12: 0.0482
REMARK 3 T13: -0.0017 T23: -0.0830
REMARK 3 L TENSOR
REMARK 3 L11: 7.3623 L22: 4.4776
REMARK 3 L33: 7.1239 L12: -1.8871
REMARK 3 L13: -0.5177 L23: 0.3847
REMARK 3 S TENSOR
REMARK 3 S11: -0.0073 S12: 0.7807 S13: -0.8724
REMARK 3 S21: -1.1183 S22: -0.6329 S23: 0.6325
REMARK 3 S31: 0.7629 S32: -0.0353 S33: 0.1992
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 283 )
REMARK 3 ORIGIN FOR THE GROUP (A): -1.3354 -6.8508 11.8902
REMARK 3 T TENSOR
REMARK 3 T11: 0.2035 T22: 0.1819
REMARK 3 T33: 0.1790 T12: -0.0494
REMARK 3 T13: -0.0141 T23: 0.0420
REMARK 3 L TENSOR
REMARK 3 L11: 1.6366 L22: 4.1945
REMARK 3 L33: 2.1031 L12: -0.8695
REMARK 3 L13: 0.1038 L23: 0.9705
REMARK 3 S TENSOR
REMARK 3 S11: -0.0532 S12: 0.0317 S13: -0.0200
REMARK 3 S21: 0.2826 S22: -0.0035 S23: 0.1530
REMARK 3 S31: 0.5008 S32: -0.1149 S33: -0.0198
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 308 )
REMARK 3 ORIGIN FOR THE GROUP (A): -7.3747 -0.3795 7.7377
REMARK 3 T TENSOR
REMARK 3 T11: 0.1693 T22: 0.3456
REMARK 3 T33: 0.2462 T12: 0.0036
REMARK 3 T13: -0.0478 T23: 0.0560
REMARK 3 L TENSOR
REMARK 3 L11: 2.8811 L22: 6.3104
REMARK 3 L33: 4.3917 L12: -1.6546
REMARK 3 L13: -0.2360 L23: 2.5464
REMARK 3 S TENSOR
REMARK 3 S11: 0.3114 S12: 0.6029 S13: -0.0799
REMARK 3 S21: -0.3071 S22: -0.6006 S23: 0.6293
REMARK 3 S31: -0.2409 S32: -1.1741 S33: 0.2678
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 309 THROUGH 322 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.4415 12.0117 17.6314
REMARK 3 T TENSOR
REMARK 3 T11: 0.4805 T22: 0.2618
REMARK 3 T33: 0.3694 T12: -0.0798
REMARK 3 T13: 0.0970 T23: -0.0474
REMARK 3 L TENSOR
REMARK 3 L11: 4.5920 L22: 5.3520
REMARK 3 L33: 9.0397 L12: 3.0185
REMARK 3 L13: 6.1906 L23: 3.5759
REMARK 3 S TENSOR
REMARK 3 S11: 0.0001 S12: 0.0511 S13: 0.9342
REMARK 3 S21: 0.2483 S22: -0.1305 S23: 0.0432
REMARK 3 S31: -1.0514 S32: 0.2065 S33: 0.3067
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 202 )
REMARK 3 ORIGIN FOR THE GROUP (A): -19.8332 -38.9739 11.0637
REMARK 3 T TENSOR
REMARK 3 T11: 0.3198 T22: 0.3456
REMARK 3 T33: 0.4560 T12: -0.0303
REMARK 3 T13: -0.0551 T23: -0.0228
REMARK 3 L TENSOR
REMARK 3 L11: 4.0735 L22: 3.0341
REMARK 3 L33: 2.6659 L12: -0.3763
REMARK 3 L13: 0.8250 L23: -0.9319
REMARK 3 S TENSOR
REMARK 3 S11: 0.2307 S12: 0.3352 S13: -1.1092
REMARK 3 S21: -0.4650 S22: -0.0857 S23: 0.9667
REMARK 3 S31: 0.5645 S32: -0.4337 S33: -0.1666
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 203 THROUGH 235 )
REMARK 3 ORIGIN FOR THE GROUP (A): -22.6257 -27.8133 20.7397
REMARK 3 T TENSOR
REMARK 3 T11: 0.2270 T22: 0.3783
REMARK 3 T33: 0.2600 T12: 0.0386
REMARK 3 T13: 0.0057 T23: 0.0523
REMARK 3 L TENSOR
REMARK 3 L11: 3.3071 L22: 2.3368
REMARK 3 L33: 4.6491 L12: -0.3408
REMARK 3 L13: 0.0611 L23: -0.7785
REMARK 3 S TENSOR
REMARK 3 S11: -0.1233 S12: -0.3699 S13: -0.0970
REMARK 3 S21: 0.7265 S22: 0.1555 S23: 0.6088
REMARK 3 S31: -0.1465 S32: -0.4984 S33: -0.0678
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 236 THROUGH 254 )
REMARK 3 ORIGIN FOR THE GROUP (A): -13.3739 -19.5843 8.3291
REMARK 3 T TENSOR
REMARK 3 T11: 0.3133 T22: 0.1865
REMARK 3 T33: 0.3039 T12: -0.0249
REMARK 3 T13: 0.0155 T23: 0.0255
REMARK 3 L TENSOR
REMARK 3 L11: 8.6626 L22: 3.6310
REMARK 3 L33: 9.3840 L12: -0.5388
REMARK 3 L13: 4.5275 L23: -2.6536
REMARK 3 S TENSOR
REMARK 3 S11: -0.4348 S12: 0.5681 S13: -0.0400
REMARK 3 S21: -0.3896 S22: -0.0267 S23: -0.2491
REMARK 3 S31: -0.4922 S32: 0.4008 S33: 0.2346
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 255 THROUGH 308 )
REMARK 3 ORIGIN FOR THE GROUP (A): -14.7430 -28.3361 14.5042
REMARK 3 T TENSOR
REMARK 3 T11: 0.1237 T22: 0.0880
REMARK 3 T33: 0.2178 T12: -0.0358
REMARK 3 T13: -0.0035 T23: -0.0113
REMARK 3 L TENSOR
REMARK 3 L11: 4.4708 L22: 4.2164
REMARK 3 L33: 5.1770 L12: -3.2595
REMARK 3 L13: 2.0479 L23: -2.9320
REMARK 3 S TENSOR
REMARK 3 S11: 0.1860 S12: 0.1928 S13: -0.1187
REMARK 3 S21: -0.1312 S22: -0.1265 S23: 0.1001
REMARK 3 S31: 0.0349 S32: 0.1235 S33: 0.0133
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 309 THROUGH 324 )
REMARK 3 ORIGIN FOR THE GROUP (A): -16.0943 -41.7854 25.7553
REMARK 3 T TENSOR
REMARK 3 T11: 0.3150 T22: 0.3280
REMARK 3 T33: 0.4051 T12: -0.0765
REMARK 3 T13: 0.0184 T23: 0.0845
REMARK 3 L TENSOR
REMARK 3 L11: 6.6558 L22: 0.2454
REMARK 3 L33: 1.5303 L12: 0.3665
REMARK 3 L13: 3.0690 L23: 0.3330
REMARK 3 S TENSOR
REMARK 3 S11: -0.1087 S12: -0.3275 S13: -1.2097
REMARK 3 S21: 0.0818 S22: 0.0910 S23: 0.4290
REMARK 3 S31: 0.9639 S32: -0.7761 S33: 0.1827
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5IF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-16.
REMARK 100 THE DEPOSITION ID IS D_1000218731.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-NOV-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 21-ID-G
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13659
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.392
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1
REMARK 200 DATA REDUNDANCY : 2.800
REMARK 200 R MERGE (I) : 0.05800
REMARK 200 R SYM (I) : 0.10500
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5500
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5
REMARK 200 DATA REDUNDANCY IN SHELL : 2.20
REMARK 200 R MERGE FOR SHELL (I) : 0.21500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.490
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 52.32
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, BIS-TRIS, MAGNESIUM
REMARK 280 CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.92100
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 169
REMARK 465 ALA A 170
REMARK 465 ASP A 171
REMARK 465 ASP A 323
REMARK 465 LEU A 324
REMARK 465 GLU A 325
REMARK 465 GLY A 326
REMARK 465 GLY A 327
REMARK 465 GLY B 169
REMARK 465 ALA B 170
REMARK 465 GLU B 325
REMARK 465 GLY B 326
REMARK 465 GLY B 327
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 244 CG CD CE NZ
REMARK 470 ASP A 256 CG OD1 OD2
REMARK 470 GLU A 322 CG CD OE1 OE2
REMARK 470 GLU B 322 CG CD OE1 OE2
REMARK 470 ASP B 323 CG OD1 OD2
REMARK 470 LEU B 324 CG CD1 CD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH B 518 O HOH B 550 2.10
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 236 71.16 41.59
REMARK 500 ASP B 236 71.14 41.02
REMARK 500 ASN B 239 -174.48 -170.67
REMARK 500 ASP B 323 -150.91 -113.88
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 6AK A 400
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 6AK B 400
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5IEZ RELATED DB: PDB
DBREF 5IF4 A 172 327 UNP Q07820 MCL1_HUMAN 172 327
DBREF 5IF4 B 172 327 UNP Q07820 MCL1_HUMAN 172 327
SEQADV 5IF4 GLY A 169 UNP Q07820 EXPRESSION TAG
SEQADV 5IF4 ALA A 170 UNP Q07820 EXPRESSION TAG
SEQADV 5IF4 ASP A 171 UNP Q07820 EXPRESSION TAG
SEQADV 5IF4 GLY B 169 UNP Q07820 EXPRESSION TAG
SEQADV 5IF4 ALA B 170 UNP Q07820 EXPRESSION TAG
SEQADV 5IF4 ASP B 171 UNP Q07820 EXPRESSION TAG
SEQRES 1 A 159 GLY ALA ASP ASP GLU LEU TYR ARG GLN SER LEU GLU ILE
SEQRES 2 A 159 ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY ALA LYS
SEQRES 3 A 159 ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SER ARG
SEQRES 4 A 159 LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP GLY VAL
SEQRES 5 A 159 GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET LEU ARG
SEQRES 6 A 159 LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SER LEU
SEQRES 7 A 159 SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY VAL THR
SEQRES 8 A 159 ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE GLY ALA
SEQRES 9 A 159 PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SER
SEQRES 10 A 159 CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP VAL LEU
SEQRES 11 A 159 VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN ARG GLY
SEQRES 12 A 159 TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP LEU
SEQRES 13 A 159 GLU GLY GLY
SEQRES 1 B 159 GLY ALA ASP ASP GLU LEU TYR ARG GLN SER LEU GLU ILE
SEQRES 2 B 159 ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY ALA LYS
SEQRES 3 B 159 ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SER ARG
SEQRES 4 B 159 LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP GLY VAL
SEQRES 5 B 159 GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET LEU ARG
SEQRES 6 B 159 LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SER LEU
SEQRES 7 B 159 SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY VAL THR
SEQRES 8 B 159 ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE GLY ALA
SEQRES 9 B 159 PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN GLU SER
SEQRES 10 B 159 CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP VAL LEU
SEQRES 11 B 159 VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN ARG GLY
SEQRES 12 B 159 TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU ASP LEU
SEQRES 13 B 159 GLU GLY GLY
HET 6AK A 400 50
HET 6AK B 400 50
HETNAM 6AK 4-{8-CHLORO-11-[3-(4-CHLORO-3,5-DIMETHYLPHENOXY)
HETNAM 2 6AK PROPYL]-1-OXO-7-(1,3,5-TRIMETHYL-1H-PYRAZOL-4-YL)-4,5-
HETNAM 3 6AK DIHYDRO-1H-[1,4]DIAZEPINO[1,2-A]INDOL-2(3H)-YL}-1-
HETNAM 4 6AK METHYL-1H-INDOLE-6-CARBOXYLIC ACID
FORMUL 3 6AK 2(C39 H39 CL2 N5 O4)
FORMUL 5 HOH *114(H2 O)
HELIX 1 AA1 ASP A 172 GLY A 192 1 21
HELIX 2 AA2 SER A 202 HIS A 224 1 23
HELIX 3 AA3 HIS A 224 ASP A 236 1 13
HELIX 4 AA4 ASN A 239 SER A 245 1 7
HELIX 5 AA5 LEU A 246 ASP A 256 1 11
HELIX 6 AA6 ASN A 260 ILE A 281 1 22
HELIX 7 AA7 GLN A 283 SER A 285 5 3
HELIX 8 AA8 CYS A 286 GLN A 309 1 24
HELIX 9 AA9 ARG A 310 HIS A 320 1 11
HELIX 10 AB1 ASP B 172 GLY B 192 1 21
HELIX 11 AB2 SER B 202 HIS B 224 1 23
HELIX 12 AB3 HIS B 224 ASP B 236 1 13
HELIX 13 AB4 ASN B 239 SER B 245 1 7
HELIX 14 AB5 LEU B 246 ASP B 256 1 11
HELIX 15 AB6 ASN B 260 ILE B 281 1 22
HELIX 16 AB7 GLN B 283 SER B 285 5 3
HELIX 17 AB8 CYS B 286 GLN B 309 1 24
HELIX 18 AB9 ARG B 310 HIS B 320 1 11
SITE 1 AC1 16 HIS A 224 ALA A 227 PHE A 228 MET A 231
SITE 2 AC1 16 VAL A 249 MET A 250 VAL A 253 ASN A 260
SITE 3 AC1 16 ARG A 263 LEU A 267 PHE A 270 GLY A 271
SITE 4 AC1 16 ILE A 294 HOH A 540 HOH A 549 HIS B 252
SITE 1 AC2 16 HIS B 224 ALA B 227 PHE B 228 MET B 231
SITE 2 AC2 16 MET B 250 VAL B 253 PHE B 254 ASP B 256
SITE 3 AC2 16 GLY B 257 VAL B 258 ASN B 260 ARG B 263
SITE 4 AC2 16 THR B 266 LEU B 267 PHE B 270 GLY B 271
CRYST1 39.748 87.842 54.072 90.00 99.68 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025158 0.000000 0.004292 0.00000
SCALE2 0.000000 0.011384 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018761 0.00000