HEADER HYDROLASE/DNA 26-FEB-16 5IFF TITLE CRYSTAL STRUCTURE OF R.PABI-NONSPECIFIC DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 8-226; COMPND 5 SYNONYM: R.PABI; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*GP*CP*AP*CP*TP*AP*GP*TP*TP*CP*GP*AP*AP*CP*TP*AP*GP*TP*GP*C)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 STRAIN: GE5 / ORSAY; SOURCE 5 GENE: PAB0105; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS RESTRICTION ENZYME, DNA GLYCOSYLASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.WANG,K.MIYAZONO,M.TANOKURA REVDAT 3 08-NOV-23 5IFF 1 REMARK REVDAT 2 19-FEB-20 5IFF 1 REMARK REVDAT 1 23-NOV-16 5IFF 0 JRNL AUTH D.WANG,K.I.MIYAZONO,M.TANOKURA JRNL TITL TETRAMERIC STRUCTURE OF THE RESTRICTION DNA GLYCOSYLASE JRNL TITL 2 R.PABI IN COMPLEX WITH NONSPECIFIC DOUBLE-STRANDED DNA. JRNL REF SCI REP V. 6 35197 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27731370 JRNL DOI 10.1038/SREP35197 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6308 - 4.8833 0.93 2775 138 0.1854 0.2113 REMARK 3 2 4.8833 - 3.8768 1.00 2829 141 0.1564 0.2039 REMARK 3 3 3.8768 - 3.3870 1.00 2787 171 0.1869 0.2574 REMARK 3 4 3.3870 - 3.0774 0.99 2766 144 0.2038 0.2481 REMARK 3 5 3.0774 - 2.8569 1.00 2784 147 0.2283 0.2497 REMARK 3 6 2.8569 - 2.6884 1.00 2736 157 0.2457 0.2797 REMARK 3 7 2.6884 - 2.5538 1.00 2765 146 0.2469 0.3162 REMARK 3 8 2.5538 - 2.4427 1.00 2758 127 0.2375 0.2816 REMARK 3 9 2.4427 - 2.3486 1.00 2754 132 0.2296 0.2297 REMARK 3 10 2.3486 - 2.2676 0.99 2726 142 0.2443 0.2619 REMARK 3 11 2.2676 - 2.1967 1.00 2741 159 0.2409 0.2784 REMARK 3 12 2.1967 - 2.1339 1.00 2738 150 0.2351 0.2846 REMARK 3 13 2.1339 - 2.0777 1.00 2738 123 0.2447 0.2600 REMARK 3 14 2.0777 - 2.0270 1.00 2723 141 0.2555 0.2841 REMARK 3 15 2.0270 - 1.9810 1.00 2743 137 0.2730 0.3203 REMARK 3 16 1.9810 - 1.9388 1.00 2762 143 0.2899 0.3599 REMARK 3 17 1.9388 - 1.9000 0.99 2677 146 0.3407 0.3400 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4000 REMARK 3 ANGLE : 1.296 5485 REMARK 3 CHIRALITY : 0.063 613 REMARK 3 PLANARITY : 0.006 624 REMARK 3 DIHEDRAL : 16.685 1553 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3926 -57.6118 4.8182 REMARK 3 T TENSOR REMARK 3 T11: 0.2901 T22: 0.3378 REMARK 3 T33: 0.2119 T12: 0.0548 REMARK 3 T13: 0.0843 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.0343 L22: 3.4318 REMARK 3 L33: 5.6842 L12: -0.7817 REMARK 3 L13: 1.5432 L23: -1.0624 REMARK 3 S TENSOR REMARK 3 S11: 0.1361 S12: -0.0249 S13: 0.0000 REMARK 3 S21: -0.2787 S22: -0.0398 S23: 0.1019 REMARK 3 S31: -0.0804 S32: -0.1987 S33: -0.0903 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1960 -37.3020 10.5346 REMARK 3 T TENSOR REMARK 3 T11: 0.3722 T22: 0.4437 REMARK 3 T33: 0.5171 T12: -0.0581 REMARK 3 T13: 0.0586 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.2009 L22: 8.8550 REMARK 3 L33: -0.0003 L12: -1.5456 REMARK 3 L13: -0.0549 L23: -0.5088 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: 0.1908 S13: 0.3102 REMARK 3 S21: 0.0042 S22: 0.1110 S23: -1.4604 REMARK 3 S31: -0.3369 S32: -0.0095 S33: -0.0327 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2587 -55.6047 7.6920 REMARK 3 T TENSOR REMARK 3 T11: 0.2605 T22: 0.2976 REMARK 3 T33: 0.2016 T12: 0.0653 REMARK 3 T13: 0.0945 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.4694 L22: 2.0022 REMARK 3 L33: 6.0742 L12: -0.2944 REMARK 3 L13: 1.3204 L23: -0.2710 REMARK 3 S TENSOR REMARK 3 S11: 0.1339 S12: -0.0155 S13: 0.0926 REMARK 3 S21: -0.1003 S22: -0.0061 S23: -0.0125 REMARK 3 S31: -0.3063 S32: -0.1574 S33: -0.0626 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9749 -15.0786 19.4712 REMARK 3 T TENSOR REMARK 3 T11: 0.6581 T22: 0.4165 REMARK 3 T33: 0.6061 T12: -0.1070 REMARK 3 T13: 0.1329 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 3.6102 L22: 6.8570 REMARK 3 L33: 5.7965 L12: 1.1896 REMARK 3 L13: -1.2633 L23: -2.1572 REMARK 3 S TENSOR REMARK 3 S11: 0.5346 S12: -0.2083 S13: 0.6729 REMARK 3 S21: 0.4183 S22: -0.1846 S23: 0.4884 REMARK 3 S31: -1.0653 S32: 0.1023 S33: -0.2124 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9226 -36.6073 5.0574 REMARK 3 T TENSOR REMARK 3 T11: 0.4122 T22: 0.4130 REMARK 3 T33: 0.4490 T12: -0.0303 REMARK 3 T13: 0.0911 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.6181 L22: 5.9430 REMARK 3 L33: 2.6132 L12: 0.0849 REMARK 3 L13: -1.5985 L23: -0.3445 REMARK 3 S TENSOR REMARK 3 S11: 0.2058 S12: 0.3402 S13: 0.1533 REMARK 3 S21: -1.2610 S22: -0.2513 S23: -0.4810 REMARK 3 S31: -0.2527 S32: -0.1115 S33: 0.0117 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 141 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3200 -24.0711 13.6859 REMARK 3 T TENSOR REMARK 3 T11: 0.4820 T22: 0.4534 REMARK 3 T33: 0.5110 T12: -0.0427 REMARK 3 T13: 0.0581 T23: 0.0939 REMARK 3 L TENSOR REMARK 3 L11: 3.3798 L22: 3.2746 REMARK 3 L33: 6.7998 L12: -2.6042 REMARK 3 L13: -3.9908 L23: 1.5040 REMARK 3 S TENSOR REMARK 3 S11: 0.6713 S12: 0.0090 S13: 0.2156 REMARK 3 S21: 0.2213 S22: -0.6888 S23: 0.0068 REMARK 3 S31: -0.1730 S32: -0.2743 S33: 0.1001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 173 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2866 -13.6088 17.0527 REMARK 3 T TENSOR REMARK 3 T11: 0.6617 T22: 0.4255 REMARK 3 T33: 0.6774 T12: -0.1058 REMARK 3 T13: 0.1172 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 3.2447 L22: 5.4987 REMARK 3 L33: 3.9759 L12: 1.0273 REMARK 3 L13: -2.3223 L23: -3.3041 REMARK 3 S TENSOR REMARK 3 S11: 0.8191 S12: -0.4241 S13: 0.7521 REMARK 3 S21: 0.1356 S22: -0.4417 S23: 0.2545 REMARK 3 S31: -1.0780 S32: 0.2103 S33: -0.2272 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.9668 -33.7400 32.0831 REMARK 3 T TENSOR REMARK 3 T11: 0.6756 T22: 0.4579 REMARK 3 T33: 0.3236 T12: -0.1341 REMARK 3 T13: 0.0363 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 8.8836 L22: 2.8666 REMARK 3 L33: 3.9396 L12: -0.4296 REMARK 3 L13: -5.9341 L23: 0.5984 REMARK 3 S TENSOR REMARK 3 S11: 0.2222 S12: 0.1443 S13: 0.1646 REMARK 3 S21: 0.6578 S22: 0.2786 S23: 0.0476 REMARK 3 S31: 0.4307 S32: -0.0906 S33: -0.4524 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.8119 -34.1899 0.2916 REMARK 3 T TENSOR REMARK 3 T11: 0.5349 T22: 0.5372 REMARK 3 T33: 0.2681 T12: 0.0436 REMARK 3 T13: 0.0470 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 3.8912 L22: 7.8667 REMARK 3 L33: 4.2655 L12: -3.4397 REMARK 3 L13: 2.8035 L23: -5.7742 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: -0.2059 S13: 0.2756 REMARK 3 S21: -0.8449 S22: 0.5261 S23: -0.1515 REMARK 3 S31: 0.1262 S32: -0.3003 S33: -0.4412 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49388 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.11750 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2DVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 0.1M IMIDAZOLE REMARK 280 (PH 8.0), 10% PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.54150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.54150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.44650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 130.85800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.44650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 130.85800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.54150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.44650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 130.85800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.54150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.44650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 130.85800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -72.89300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 32.54150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 122 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 GLY A 224 REMARK 465 THR A 225 REMARK 465 SER A 226 REMARK 465 MET B 7 REMARK 465 SER B 53 REMARK 465 ASP B 54 REMARK 465 GLU B 55 REMARK 465 ASN B 56 REMARK 465 GLY B 224 REMARK 465 THR B 225 REMARK 465 SER B 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 12 O3' DA C 12 C3' -0.044 REMARK 500 DA C 13 O3' DA C 13 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 14 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 26 76.94 -114.55 REMARK 500 ASP A 54 -161.80 -122.76 REMARK 500 TYR A 74 57.47 -99.05 REMARK 500 GLU A 77 -112.56 47.65 REMARK 500 SER A 176 128.36 -36.63 REMARK 500 TYR B 74 52.94 -98.62 REMARK 500 GLU B 77 -108.81 52.53 REMARK 500 ARG B 156 -0.36 69.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 5IFF A 8 226 UNP Q9V2B6 Q9V2B6_PYRAB 8 226 DBREF 5IFF B 8 226 UNP Q9V2B6 Q9V2B6_PYRAB 8 226 DBREF 5IFF C 1 20 PDB 5IFF 5IFF 1 20 SEQADV 5IFF MET A 7 UNP Q9V2B6 INITIATING METHIONINE SEQADV 5IFF ALA A 32 UNP Q9V2B6 ARG 32 ENGINEERED MUTATION SEQADV 5IFF ALA A 63 UNP Q9V2B6 GLU 63 ENGINEERED MUTATION SEQADV 5IFF MET B 7 UNP Q9V2B6 INITIATING METHIONINE SEQADV 5IFF ALA B 32 UNP Q9V2B6 ARG 32 ENGINEERED MUTATION SEQADV 5IFF ALA B 63 UNP Q9V2B6 GLU 63 ENGINEERED MUTATION SEQRES 1 A 220 MET GLU ALA SER VAL SER PHE GLU ASN GLY LYS ILE VAL SEQRES 2 A 220 VAL ARG LEU PRO ILE THR ARG PRO THR SER LYS ILE ALA SEQRES 3 A 220 VAL LYS LYS ILE GLU ASN GLY VAL GLY ILE PRO VAL SER SEQRES 4 A 220 THR ARG LYS LYS SER PHE PRO SER ASP GLU ASN LEU ARG SEQRES 5 A 220 ASP TYR TYR ILE ALA TRP GLN ILE SER TYR ALA ARG ASP SEQRES 6 A 220 GLY LYS TYR ASP TYR GLU LEU SER ARG MET VAL ARG LEU SEQRES 7 A 220 ALA HIS GLU HIS GLY ILE LEU THR TYR ASN ASP ILE TYR SEQRES 8 A 220 GLU LEU LEU LYS PHE ALA ASP ASP VAL LYS SER TYR LEU SEQRES 9 A 220 GLU ASP LYS GLY ILE ARG ARG GLU SER THR ASN GLU GLU SEQRES 10 A 220 LEU TYR GLY PHE ASN ILE TYR GLU ASP VAL TYR PRO VAL SEQRES 11 A 220 ALA LYS LYS GLU LEU PRO SER GLY GLU PHE ILE GLY ILE SEQRES 12 A 220 VAL LEU LYS HIS LYS GLN ARG ALA VAL GLY TYR GLN SER SEQRES 13 A 220 MET VAL TYR VAL CYS ILE PRO LEU THR ASN VAL GLU PRO SEQRES 14 A 220 SER LEU ALA GLY ARG VAL ALA ARG ARG ASN GLU VAL VAL SEQRES 15 A 220 LYS TYR GLU VAL PRO VAL ASP LEU MET LYS GLU LEU LEU SEQRES 16 A 220 LYS ALA PHE ILE ILE ALA SER GLU THR HIS LYS ASN ASP SEQRES 17 A 220 ILE VAL LYS PHE LEU ARG SER ILE ILE GLY THR SER SEQRES 1 B 220 MET GLU ALA SER VAL SER PHE GLU ASN GLY LYS ILE VAL SEQRES 2 B 220 VAL ARG LEU PRO ILE THR ARG PRO THR SER LYS ILE ALA SEQRES 3 B 220 VAL LYS LYS ILE GLU ASN GLY VAL GLY ILE PRO VAL SER SEQRES 4 B 220 THR ARG LYS LYS SER PHE PRO SER ASP GLU ASN LEU ARG SEQRES 5 B 220 ASP TYR TYR ILE ALA TRP GLN ILE SER TYR ALA ARG ASP SEQRES 6 B 220 GLY LYS TYR ASP TYR GLU LEU SER ARG MET VAL ARG LEU SEQRES 7 B 220 ALA HIS GLU HIS GLY ILE LEU THR TYR ASN ASP ILE TYR SEQRES 8 B 220 GLU LEU LEU LYS PHE ALA ASP ASP VAL LYS SER TYR LEU SEQRES 9 B 220 GLU ASP LYS GLY ILE ARG ARG GLU SER THR ASN GLU GLU SEQRES 10 B 220 LEU TYR GLY PHE ASN ILE TYR GLU ASP VAL TYR PRO VAL SEQRES 11 B 220 ALA LYS LYS GLU LEU PRO SER GLY GLU PHE ILE GLY ILE SEQRES 12 B 220 VAL LEU LYS HIS LYS GLN ARG ALA VAL GLY TYR GLN SER SEQRES 13 B 220 MET VAL TYR VAL CYS ILE PRO LEU THR ASN VAL GLU PRO SEQRES 14 B 220 SER LEU ALA GLY ARG VAL ALA ARG ARG ASN GLU VAL VAL SEQRES 15 B 220 LYS TYR GLU VAL PRO VAL ASP LEU MET LYS GLU LEU LEU SEQRES 16 B 220 LYS ALA PHE ILE ILE ALA SER GLU THR HIS LYS ASN ASP SEQRES 17 B 220 ILE VAL LYS PHE LEU ARG SER ILE ILE GLY THR SER SEQRES 1 C 20 DG DC DA DC DT DA DG DT DT DC DG DA DA SEQRES 2 C 20 DC DT DA DG DT DG DC FORMUL 4 HOH *162(H2 O) HELIX 1 AA1 GLU A 37 VAL A 40 5 4 HELIX 2 AA2 ASP A 54 ARG A 58 5 5 HELIX 3 AA3 GLU A 77 HIS A 88 1 12 HELIX 4 AA4 THR A 92 VAL A 106 1 15 HELIX 5 AA5 TYR A 109 GLY A 114 1 6 HELIX 6 AA6 THR A 171 VAL A 173 5 3 HELIX 7 AA7 PRO A 193 SER A 208 1 16 HELIX 8 AA8 SER A 208 ILE A 223 1 16 HELIX 9 AA9 GLU B 77 HIS B 88 1 12 HELIX 10 AB1 THR B 92 VAL B 106 1 15 HELIX 11 AB2 TYR B 109 GLY B 114 1 6 HELIX 12 AB3 THR B 171 VAL B 173 5 3 HELIX 13 AB4 PRO B 193 SER B 208 1 16 HELIX 14 AB5 SER B 208 ILE B 223 1 16 SHEET 1 AA1 3 SER A 10 GLU A 14 0 SHEET 2 AA1 3 LYS A 17 PRO A 23 -1 O VAL A 19 N SER A 12 SHEET 3 AA1 3 VAL A 187 VAL A 192 -1 O VAL A 188 N LEU A 22 SHEET 1 AA212 VAL A 44 SER A 45 0 SHEET 2 AA212 ILE A 31 LYS A 35 -1 N LYS A 35 O VAL A 44 SHEET 3 AA212 TYR A 60 GLN A 65 -1 O ALA A 63 N ALA A 32 SHEET 4 AA212 TYR A 160 PRO A 169 -1 O ILE A 168 N ILE A 62 SHEET 5 AA212 PHE A 146 HIS A 153 -1 N LYS A 152 O GLN A 161 SHEET 6 AA212 PHE A 127 GLU A 140 -1 N LYS A 139 O ILE A 147 SHEET 7 AA212 PHE B 127 GLU B 140 -1 O TYR B 130 N VAL A 136 SHEET 8 AA212 PHE B 146 HIS B 153 -1 O ILE B 147 N LYS B 139 SHEET 9 AA212 TYR B 160 PRO B 169 -1 O CYS B 167 N PHE B 146 SHEET 10 AA212 TYR B 60 GLN B 65 -1 N TRP B 64 O VAL B 166 SHEET 11 AA212 ILE B 31 GLU B 37 -1 N ALA B 32 O ALA B 63 SHEET 12 AA212 VAL B 40 PRO B 43 -1 O ILE B 42 N LYS B 35 SHEET 1 AA3 4 ARG A 116 LEU A 124 0 SHEET 2 AA3 4 PHE A 127 GLU A 140 -1 O GLU A 131 N GLU A 118 SHEET 3 AA3 4 PHE B 127 GLU B 140 -1 O TYR B 130 N VAL A 136 SHEET 4 AA3 4 ARG B 116 LEU B 124 -1 N GLU B 118 O GLU B 131 SHEET 1 AA4 3 SER B 10 GLU B 14 0 SHEET 2 AA4 3 LYS B 17 PRO B 23 -1 O LYS B 17 N GLU B 14 SHEET 3 AA4 3 VAL B 187 GLU B 191 -1 O TYR B 190 N VAL B 20 CISPEP 1 GLU A 174 PRO A 175 0 -7.82 CISPEP 2 GLU B 174 PRO B 175 0 -0.58 CRYST1 72.893 261.716 65.083 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013719 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015365 0.00000