HEADER TRANSFERASE 26-FEB-16 5IG4 TITLE CRYSTAL STRUCTURE OF N. VECTENSIS CAMKII-A HUB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F, G; COMPND 4 FRAGMENT: UNP RESIDUES 330-472; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEMATOSTELLA VECTENSIS; SOURCE 3 ORGANISM_COMMON: STARLET SEA ANEMONE; SOURCE 4 ORGANISM_TAXID: 45351; SOURCE 5 GENE: V1G220432; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CA2+/CAM-DEPENDENT KINASE, SEA ANEMONE, CLOSED-RING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.BHATTACHARYYA,N.PAPPIREDDI,C.L.GEE,T.BARROS,J.KURIYAN REVDAT 7 27-SEP-23 5IG4 1 REMARK REVDAT 6 20-NOV-19 5IG4 1 REMARK REVDAT 5 27-SEP-17 5IG4 1 REMARK REVDAT 4 13-JUL-16 5IG4 1 REMARK REVDAT 3 20-APR-16 5IG4 1 AUTHOR REVDAT 2 06-APR-16 5IG4 1 AUTHOR REVDAT 1 23-MAR-16 5IG4 0 JRNL AUTH M.BHATTACHARYYA,M.M.STRATTON,C.C.GOING,E.D.MCSPADDEN, JRNL AUTH 2 Y.HUANG,A.C.SUSA,A.ELLEMAN,Y.M.CAO,N.PAPPIREDDI,P.BURKHARDT, JRNL AUTH 3 C.L.GEE,T.BARROS,H.SCHULMAN,E.R.WILLIAMS,J.KURIYAN JRNL TITL MOLECULAR MECHANISM OF ACTIVATION-TRIGGERED SUBUNIT EXCHANGE JRNL TITL 2 IN CA(2+)/CALMODULIN-DEPENDENT PROTEIN KINASE II. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 26949248 JRNL DOI 10.7554/ELIFE.13405 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 50315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0903 - 7.2927 0.98 3210 165 0.1707 0.1791 REMARK 3 2 7.2927 - 5.7921 1.00 3232 161 0.2054 0.2538 REMARK 3 3 5.7921 - 5.0610 1.00 3235 181 0.1767 0.1945 REMARK 3 4 5.0610 - 4.5987 1.00 3187 199 0.1383 0.1436 REMARK 3 5 4.5987 - 4.2693 1.00 3192 193 0.1298 0.1553 REMARK 3 6 4.2693 - 4.0178 0.99 3258 156 0.1491 0.1701 REMARK 3 7 4.0178 - 3.8167 1.00 3267 140 0.1727 0.2007 REMARK 3 8 3.8167 - 3.6506 1.00 3211 175 0.1860 0.2074 REMARK 3 9 3.6506 - 3.5101 1.00 3198 185 0.1822 0.1969 REMARK 3 10 3.5101 - 3.3890 1.00 3244 180 0.2042 0.2372 REMARK 3 11 3.3890 - 3.2831 1.00 3220 167 0.2007 0.2226 REMARK 3 12 3.2831 - 3.1893 1.00 3304 157 0.1951 0.2134 REMARK 3 13 3.1893 - 3.1053 1.00 3222 170 0.2073 0.2811 REMARK 3 14 3.1053 - 3.0296 1.00 3243 177 0.2271 0.2712 REMARK 3 15 3.0296 - 2.9607 1.00 3268 117 0.2309 0.3034 REMARK 3 16 2.9607 - 2.8977 1.00 3236 169 0.2132 0.2587 REMARK 3 17 2.8977 - 2.8398 1.00 3225 205 0.1945 0.2111 REMARK 3 18 2.8398 - 2.7862 1.00 3246 170 0.2126 0.2926 REMARK 3 19 2.7862 - 2.7364 1.00 3253 142 0.2156 0.2766 REMARK 3 20 2.7364 - 2.6900 1.00 3261 178 0.2378 0.2487 REMARK 3 21 2.6900 - 2.6467 1.00 3171 182 0.2181 0.3116 REMARK 3 22 2.6467 - 2.6059 1.00 3332 120 0.2387 0.3009 REMARK 3 23 2.6059 - 2.5676 1.00 3263 158 0.2425 0.2844 REMARK 3 24 2.5676 - 2.5315 1.00 3195 149 0.2690 0.3171 REMARK 3 25 2.5315 - 2.4973 1.00 3290 201 0.2874 0.3312 REMARK 3 26 2.4973 - 2.4648 1.00 3156 165 0.2886 0.3731 REMARK 3 27 2.4648 - 2.4340 0.99 3296 148 0.2940 0.3105 REMARK 3 28 2.4340 - 2.4047 0.98 3183 166 0.3019 0.3466 REMARK 3 29 2.4047 - 2.3767 0.96 3074 170 0.3024 0.3311 REMARK 3 30 2.3767 - 2.3500 0.93 3020 147 0.3234 0.3287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7481 REMARK 3 ANGLE : 0.845 10150 REMARK 3 CHIRALITY : 0.051 1154 REMARK 3 PLANARITY : 0.005 1288 REMARK 3 DIHEDRAL : 12.746 4426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : M1: PARABOLA M2: TORROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HKX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM THIOCYANATE, 20% W/V REMARK 280 PEG 3350, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.75550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.75550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.23300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 90.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.23300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 90.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.75550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.23300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.05000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.75550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.23300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 90.05000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 76570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -215.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.46600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 448.77750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 330 REMARK 465 PRO A 331 REMARK 465 HIS A 332 REMARK 465 SER A 333 REMARK 465 GLU A 334 REMARK 465 ASP A 335 REMARK 465 GLU A 336 REMARK 465 GLU A 337 REMARK 465 GLY A 338 REMARK 465 GLN A 339 REMARK 465 ASP A 340 REMARK 465 VAL A 341 REMARK 465 ARG A 406 REMARK 465 SER A 407 REMARK 465 MET A 473 REMARK 465 SER A 474 REMARK 465 GLY B 330 REMARK 465 PRO B 331 REMARK 465 HIS B 332 REMARK 465 SER B 333 REMARK 465 GLU B 334 REMARK 465 ASP B 335 REMARK 465 GLU B 336 REMARK 465 GLU B 337 REMARK 465 GLY B 338 REMARK 465 GLN B 339 REMARK 465 ASP B 340 REMARK 465 VAL B 341 REMARK 465 LYS B 472 REMARK 465 MET B 473 REMARK 465 SER B 474 REMARK 465 GLY C 330 REMARK 465 PRO C 331 REMARK 465 HIS C 332 REMARK 465 SER C 333 REMARK 465 GLU C 334 REMARK 465 ASP C 335 REMARK 465 GLU C 336 REMARK 465 GLU C 337 REMARK 465 GLY C 338 REMARK 465 GLN C 339 REMARK 465 ASP C 340 REMARK 465 VAL C 341 REMARK 465 ARG C 406 REMARK 465 SER C 407 REMARK 465 LYS C 472 REMARK 465 MET C 473 REMARK 465 SER C 474 REMARK 465 GLY D 330 REMARK 465 PRO D 331 REMARK 465 HIS D 332 REMARK 465 SER D 333 REMARK 465 GLU D 334 REMARK 465 ASP D 335 REMARK 465 GLU D 336 REMARK 465 GLU D 337 REMARK 465 GLY D 338 REMARK 465 GLN D 339 REMARK 465 ASP D 340 REMARK 465 VAL D 341 REMARK 465 LYS D 472 REMARK 465 MET D 473 REMARK 465 SER D 474 REMARK 465 GLY E 330 REMARK 465 PRO E 331 REMARK 465 HIS E 332 REMARK 465 SER E 333 REMARK 465 GLU E 334 REMARK 465 ASP E 335 REMARK 465 GLU E 336 REMARK 465 GLU E 337 REMARK 465 GLY E 338 REMARK 465 GLN E 339 REMARK 465 ASP E 340 REMARK 465 VAL E 341 REMARK 465 MET E 473 REMARK 465 SER E 474 REMARK 465 GLY F 330 REMARK 465 PRO F 331 REMARK 465 HIS F 332 REMARK 465 SER F 333 REMARK 465 GLU F 334 REMARK 465 ASP F 335 REMARK 465 GLU F 336 REMARK 465 GLU F 337 REMARK 465 GLY F 338 REMARK 465 GLN F 339 REMARK 465 ASP F 340 REMARK 465 ARG F 406 REMARK 465 SER F 407 REMARK 465 LYS F 472 REMARK 465 MET F 473 REMARK 465 SER F 474 REMARK 465 GLY G 330 REMARK 465 PRO G 331 REMARK 465 HIS G 332 REMARK 465 SER G 333 REMARK 465 GLU G 334 REMARK 465 ASP G 335 REMARK 465 GLU G 336 REMARK 465 GLU G 337 REMARK 465 GLY G 338 REMARK 465 GLN G 339 REMARK 465 ASP G 340 REMARK 465 VAL G 341 REMARK 465 LYS G 472 REMARK 465 MET G 473 REMARK 465 SER G 474 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP E 374 HZ3 LYS E 458 1.43 REMARK 500 O SER D 440 HG SER D 441 1.52 REMARK 500 HH22 ARG D 346 O GLY D 423 1.53 REMARK 500 HH TYR F 398 O HOH F 503 1.54 REMARK 500 H GLY C 386 O3 GOL C 501 1.56 REMARK 500 HE ARG D 352 O HOH D 503 1.56 REMARK 500 HH12 ARG B 352 O HOH B 603 1.56 REMARK 500 HH TYR D 398 O HOH D 502 1.57 REMARK 500 OG SER B 470 O3 GOL B 501 1.95 REMARK 500 OE1 GLU G 349 O HOH G 501 2.00 REMARK 500 OD2 ASP D 365 OG1 THR D 368 2.01 REMARK 500 OE1 GLU A 390 O HOH A 501 2.02 REMARK 500 OD2 ASP E 374 NZ LYS E 458 2.09 REMARK 500 OD2 ASP F 365 OG1 THR F 368 2.13 REMARK 500 O SER G 404 O HOH G 502 2.15 REMARK 500 OD2 ASP E 365 OG1 THR E 368 2.17 REMARK 500 O HOH G 522 O HOH G 523 2.17 REMARK 500 O HOH F 501 O HOH F 512 2.17 REMARK 500 O LYS C 457 O HOH C 601 2.18 REMARK 500 O HOH F 511 O HOH F 518 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H GLY B 386 HO1 GOL B 501 3657 1.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 402 -35.81 -151.34 REMARK 500 LEU A 422 69.41 -119.31 REMARK 500 THR B 402 -63.38 -131.16 REMARK 500 THR C 402 -67.79 -154.62 REMARK 500 SER C 440 -9.79 72.55 REMARK 500 HIS D 376 40.27 -108.85 REMARK 500 THR D 402 -47.98 -137.10 REMARK 500 ARG D 406 -151.26 -150.92 REMARK 500 SER D 441 11.23 88.95 REMARK 500 ASN E 401 -60.53 -133.87 REMARK 500 THR F 402 -43.65 -135.22 REMARK 500 SER G 441 -160.43 -79.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IG0 RELATED DB: PDB REMARK 900 RELATED ID: 5IG1 RELATED DB: PDB REMARK 900 RELATED ID: 5IG3 RELATED DB: PDB REMARK 900 RELATED ID: 5IG5 RELATED DB: PDB DBREF 5IG4 A 333 474 UNP A7T0H5 A7T0H5_NEMVE 331 472 DBREF 5IG4 B 333 474 UNP A7T0H5 A7T0H5_NEMVE 331 472 DBREF 5IG4 C 333 474 UNP A7T0H5 A7T0H5_NEMVE 331 472 DBREF 5IG4 D 333 474 UNP A7T0H5 A7T0H5_NEMVE 331 472 DBREF 5IG4 E 333 474 UNP A7T0H5 A7T0H5_NEMVE 331 472 DBREF 5IG4 F 333 474 UNP A7T0H5 A7T0H5_NEMVE 331 472 DBREF 5IG4 G 333 474 UNP A7T0H5 A7T0H5_NEMVE 331 472 SEQADV 5IG4 GLY A 330 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 PRO A 331 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 HIS A 332 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 GLY B 330 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 PRO B 331 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 HIS B 332 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 GLY C 330 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 PRO C 331 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 HIS C 332 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 GLY D 330 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 PRO D 331 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 HIS D 332 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 GLY E 330 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 PRO E 331 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 HIS E 332 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 GLY F 330 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 PRO F 331 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 HIS F 332 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 GLY G 330 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 PRO G 331 UNP A7T0H5 EXPRESSION TAG SEQADV 5IG4 HIS G 332 UNP A7T0H5 EXPRESSION TAG SEQRES 1 A 145 GLY PRO HIS SER GLU ASP GLU GLU GLY GLN ASP VAL THR SEQRES 2 A 145 ALA LYS VAL ARG GLU GLN GLU ILE ILE ARG LEU THR GLN SEQRES 3 A 145 LYS LEU ILE THR SER ILE THR THR GLY ASP TYR ASP THR SEQRES 4 A 145 TYR SER LYS LEU VAL ASP PRO HIS VAL THR CYS PHE GLU SEQRES 5 A 145 PRO PHE SER ASN GLY ASN LEU VAL GLU GLY LEU GLU PHE SEQRES 6 A 145 HIS LYS PHE TYR PHE ASP ASN THR LEU SER LYS ARG SER SEQRES 7 A 145 VAL PRO ILE ASN THR THR ILE LEU SER PRO HIS VAL HIS SEQRES 8 A 145 VAL LEU GLY GLU ASP ALA ALA CYS ILE CYS TYR MET ARG SEQRES 9 A 145 LEU THR GLN SER VAL ASN SER SER GLY GLU ALA LYS THR SEQRES 10 A 145 LEU GLN GLN GLU GLU THR ARG VAL TRP GLN LYS LYS GLY SEQRES 11 A 145 GLY ASN TRP ILE ASN VAL HIS PHE HIS ILE SER GLY LYS SEQRES 12 A 145 MET SER SEQRES 1 B 145 GLY PRO HIS SER GLU ASP GLU GLU GLY GLN ASP VAL THR SEQRES 2 B 145 ALA LYS VAL ARG GLU GLN GLU ILE ILE ARG LEU THR GLN SEQRES 3 B 145 LYS LEU ILE THR SER ILE THR THR GLY ASP TYR ASP THR SEQRES 4 B 145 TYR SER LYS LEU VAL ASP PRO HIS VAL THR CYS PHE GLU SEQRES 5 B 145 PRO PHE SER ASN GLY ASN LEU VAL GLU GLY LEU GLU PHE SEQRES 6 B 145 HIS LYS PHE TYR PHE ASP ASN THR LEU SER LYS ARG SER SEQRES 7 B 145 VAL PRO ILE ASN THR THR ILE LEU SER PRO HIS VAL HIS SEQRES 8 B 145 VAL LEU GLY GLU ASP ALA ALA CYS ILE CYS TYR MET ARG SEQRES 9 B 145 LEU THR GLN SER VAL ASN SER SER GLY GLU ALA LYS THR SEQRES 10 B 145 LEU GLN GLN GLU GLU THR ARG VAL TRP GLN LYS LYS GLY SEQRES 11 B 145 GLY ASN TRP ILE ASN VAL HIS PHE HIS ILE SER GLY LYS SEQRES 12 B 145 MET SER SEQRES 1 C 145 GLY PRO HIS SER GLU ASP GLU GLU GLY GLN ASP VAL THR SEQRES 2 C 145 ALA LYS VAL ARG GLU GLN GLU ILE ILE ARG LEU THR GLN SEQRES 3 C 145 LYS LEU ILE THR SER ILE THR THR GLY ASP TYR ASP THR SEQRES 4 C 145 TYR SER LYS LEU VAL ASP PRO HIS VAL THR CYS PHE GLU SEQRES 5 C 145 PRO PHE SER ASN GLY ASN LEU VAL GLU GLY LEU GLU PHE SEQRES 6 C 145 HIS LYS PHE TYR PHE ASP ASN THR LEU SER LYS ARG SER SEQRES 7 C 145 VAL PRO ILE ASN THR THR ILE LEU SER PRO HIS VAL HIS SEQRES 8 C 145 VAL LEU GLY GLU ASP ALA ALA CYS ILE CYS TYR MET ARG SEQRES 9 C 145 LEU THR GLN SER VAL ASN SER SER GLY GLU ALA LYS THR SEQRES 10 C 145 LEU GLN GLN GLU GLU THR ARG VAL TRP GLN LYS LYS GLY SEQRES 11 C 145 GLY ASN TRP ILE ASN VAL HIS PHE HIS ILE SER GLY LYS SEQRES 12 C 145 MET SER SEQRES 1 D 145 GLY PRO HIS SER GLU ASP GLU GLU GLY GLN ASP VAL THR SEQRES 2 D 145 ALA LYS VAL ARG GLU GLN GLU ILE ILE ARG LEU THR GLN SEQRES 3 D 145 LYS LEU ILE THR SER ILE THR THR GLY ASP TYR ASP THR SEQRES 4 D 145 TYR SER LYS LEU VAL ASP PRO HIS VAL THR CYS PHE GLU SEQRES 5 D 145 PRO PHE SER ASN GLY ASN LEU VAL GLU GLY LEU GLU PHE SEQRES 6 D 145 HIS LYS PHE TYR PHE ASP ASN THR LEU SER LYS ARG SER SEQRES 7 D 145 VAL PRO ILE ASN THR THR ILE LEU SER PRO HIS VAL HIS SEQRES 8 D 145 VAL LEU GLY GLU ASP ALA ALA CYS ILE CYS TYR MET ARG SEQRES 9 D 145 LEU THR GLN SER VAL ASN SER SER GLY GLU ALA LYS THR SEQRES 10 D 145 LEU GLN GLN GLU GLU THR ARG VAL TRP GLN LYS LYS GLY SEQRES 11 D 145 GLY ASN TRP ILE ASN VAL HIS PHE HIS ILE SER GLY LYS SEQRES 12 D 145 MET SER SEQRES 1 E 145 GLY PRO HIS SER GLU ASP GLU GLU GLY GLN ASP VAL THR SEQRES 2 E 145 ALA LYS VAL ARG GLU GLN GLU ILE ILE ARG LEU THR GLN SEQRES 3 E 145 LYS LEU ILE THR SER ILE THR THR GLY ASP TYR ASP THR SEQRES 4 E 145 TYR SER LYS LEU VAL ASP PRO HIS VAL THR CYS PHE GLU SEQRES 5 E 145 PRO PHE SER ASN GLY ASN LEU VAL GLU GLY LEU GLU PHE SEQRES 6 E 145 HIS LYS PHE TYR PHE ASP ASN THR LEU SER LYS ARG SER SEQRES 7 E 145 VAL PRO ILE ASN THR THR ILE LEU SER PRO HIS VAL HIS SEQRES 8 E 145 VAL LEU GLY GLU ASP ALA ALA CYS ILE CYS TYR MET ARG SEQRES 9 E 145 LEU THR GLN SER VAL ASN SER SER GLY GLU ALA LYS THR SEQRES 10 E 145 LEU GLN GLN GLU GLU THR ARG VAL TRP GLN LYS LYS GLY SEQRES 11 E 145 GLY ASN TRP ILE ASN VAL HIS PHE HIS ILE SER GLY LYS SEQRES 12 E 145 MET SER SEQRES 1 F 145 GLY PRO HIS SER GLU ASP GLU GLU GLY GLN ASP VAL THR SEQRES 2 F 145 ALA LYS VAL ARG GLU GLN GLU ILE ILE ARG LEU THR GLN SEQRES 3 F 145 LYS LEU ILE THR SER ILE THR THR GLY ASP TYR ASP THR SEQRES 4 F 145 TYR SER LYS LEU VAL ASP PRO HIS VAL THR CYS PHE GLU SEQRES 5 F 145 PRO PHE SER ASN GLY ASN LEU VAL GLU GLY LEU GLU PHE SEQRES 6 F 145 HIS LYS PHE TYR PHE ASP ASN THR LEU SER LYS ARG SER SEQRES 7 F 145 VAL PRO ILE ASN THR THR ILE LEU SER PRO HIS VAL HIS SEQRES 8 F 145 VAL LEU GLY GLU ASP ALA ALA CYS ILE CYS TYR MET ARG SEQRES 9 F 145 LEU THR GLN SER VAL ASN SER SER GLY GLU ALA LYS THR SEQRES 10 F 145 LEU GLN GLN GLU GLU THR ARG VAL TRP GLN LYS LYS GLY SEQRES 11 F 145 GLY ASN TRP ILE ASN VAL HIS PHE HIS ILE SER GLY LYS SEQRES 12 F 145 MET SER SEQRES 1 G 145 GLY PRO HIS SER GLU ASP GLU GLU GLY GLN ASP VAL THR SEQRES 2 G 145 ALA LYS VAL ARG GLU GLN GLU ILE ILE ARG LEU THR GLN SEQRES 3 G 145 LYS LEU ILE THR SER ILE THR THR GLY ASP TYR ASP THR SEQRES 4 G 145 TYR SER LYS LEU VAL ASP PRO HIS VAL THR CYS PHE GLU SEQRES 5 G 145 PRO PHE SER ASN GLY ASN LEU VAL GLU GLY LEU GLU PHE SEQRES 6 G 145 HIS LYS PHE TYR PHE ASP ASN THR LEU SER LYS ARG SER SEQRES 7 G 145 VAL PRO ILE ASN THR THR ILE LEU SER PRO HIS VAL HIS SEQRES 8 G 145 VAL LEU GLY GLU ASP ALA ALA CYS ILE CYS TYR MET ARG SEQRES 9 G 145 LEU THR GLN SER VAL ASN SER SER GLY GLU ALA LYS THR SEQRES 10 G 145 LEU GLN GLN GLU GLU THR ARG VAL TRP GLN LYS LYS GLY SEQRES 11 G 145 GLY ASN TRP ILE ASN VAL HIS PHE HIS ILE SER GLY LYS SEQRES 12 G 145 MET SER HET GOL B 501 14 HET GOL C 501 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 HOH *150(H2 O) HELIX 1 AA1 THR A 342 GLY A 364 1 23 HELIX 2 AA2 ASP A 365 LEU A 372 1 8 HELIX 3 AA3 GLU A 381 ASN A 385 5 5 HELIX 4 AA4 LEU A 392 THR A 402 1 11 HELIX 5 AA5 ALA B 343 THR B 363 1 21 HELIX 6 AA6 ASP B 365 LEU B 372 1 8 HELIX 7 AA7 GLU B 381 ASN B 385 5 5 HELIX 8 AA8 LEU B 392 THR B 402 1 11 HELIX 9 AA9 LEU B 403 ARG B 406 5 4 HELIX 10 AB1 ALA C 343 GLY C 364 1 22 HELIX 11 AB2 ASP C 365 LEU C 372 1 8 HELIX 12 AB3 GLU C 381 ASN C 385 5 5 HELIX 13 AB4 LEU C 392 THR C 402 1 11 HELIX 14 AB5 ALA D 343 GLY D 364 1 22 HELIX 15 AB6 ASP D 365 LEU D 372 1 8 HELIX 16 AB7 GLU D 381 ASN D 385 5 5 HELIX 17 AB8 LEU D 392 ASP D 400 1 9 HELIX 18 AB9 ALA E 343 GLY E 364 1 22 HELIX 19 AC1 ASP E 365 LEU E 372 1 8 HELIX 20 AC2 GLU E 381 ASN E 385 5 5 HELIX 21 AC3 LEU E 392 ASP E 400 1 9 HELIX 22 AC4 ASN E 401 ARG E 406 1 6 HELIX 23 AC5 THR F 342 GLY F 364 1 23 HELIX 24 AC6 ASP F 365 LEU F 372 1 8 HELIX 25 AC7 GLU F 381 ASN F 385 5 5 HELIX 26 AC8 LEU F 392 THR F 402 1 11 HELIX 27 AC9 ALA G 343 THR G 363 1 21 HELIX 28 AD1 ASP G 365 LEU G 372 1 8 HELIX 29 AD2 GLU G 381 ASN G 385 5 5 HELIX 30 AD3 LEU G 392 THR G 402 1 11 SHEET 1 AA1 6 VAL A 389 GLU A 390 0 SHEET 2 AA1 6 VAL A 373 PHE A 380 -1 N CYS A 379 O VAL A 389 SHEET 3 AA1 6 ASN A 461 SER A 470 1 O ILE A 469 N PHE A 380 SHEET 4 AA1 6 ALA A 444 LYS A 458 -1 N GLN A 456 O ILE A 463 SHEET 5 AA1 6 ALA A 426 VAL A 438 -1 N ALA A 427 O TRP A 455 SHEET 6 AA1 6 ILE A 410 VAL A 421 -1 N HIS A 420 O CYS A 428 SHEET 1 AA2 6 VAL B 389 GLU B 390 0 SHEET 2 AA2 6 VAL B 373 PHE B 380 -1 N CYS B 379 O VAL B 389 SHEET 3 AA2 6 ASN B 461 SER B 470 1 O ILE B 469 N PHE B 380 SHEET 4 AA2 6 ALA B 444 LYS B 458 -1 N GLN B 456 O ILE B 463 SHEET 5 AA2 6 ALA B 426 VAL B 438 -1 N ARG B 433 O GLN B 449 SHEET 6 AA2 6 ILE B 410 GLY B 423 -1 N HIS B 420 O CYS B 428 SHEET 1 AA3 6 VAL C 389 GLU C 390 0 SHEET 2 AA3 6 VAL C 373 PHE C 380 -1 N CYS C 379 O VAL C 389 SHEET 3 AA3 6 ASN C 461 SER C 470 1 O ILE C 469 N PHE C 380 SHEET 4 AA3 6 ALA C 444 LYS C 458 -1 N LYS C 458 O ASN C 461 SHEET 5 AA3 6 ALA C 426 VAL C 438 -1 N ALA C 427 O TRP C 455 SHEET 6 AA3 6 ILE C 410 VAL C 421 -1 N HIS C 420 O CYS C 428 SHEET 1 AA4 6 VAL D 389 GLU D 390 0 SHEET 2 AA4 6 VAL D 373 PHE D 380 -1 N CYS D 379 O VAL D 389 SHEET 3 AA4 6 ASN D 461 SER D 470 1 O ILE D 469 N PHE D 380 SHEET 4 AA4 6 ALA D 444 LYS D 458 -1 N GLN D 456 O ILE D 463 SHEET 5 AA4 6 ALA D 426 VAL D 438 -1 N ALA D 427 O TRP D 455 SHEET 6 AA4 6 ILE D 410 GLY D 423 -1 N HIS D 420 O CYS D 428 SHEET 1 AA5 6 VAL E 389 GLU E 390 0 SHEET 2 AA5 6 VAL E 373 PHE E 380 -1 N CYS E 379 O VAL E 389 SHEET 3 AA5 6 ASN E 461 SER E 470 1 O ILE E 469 N PHE E 380 SHEET 4 AA5 6 ALA E 444 LYS E 458 -1 N VAL E 454 O HIS E 466 SHEET 5 AA5 6 ALA E 426 VAL E 438 -1 N ALA E 427 O TRP E 455 SHEET 6 AA5 6 ILE E 410 VAL E 421 -1 N HIS E 420 O CYS E 428 SHEET 1 AA6 6 VAL F 389 GLU F 390 0 SHEET 2 AA6 6 VAL F 373 PHE F 380 -1 N CYS F 379 O VAL F 389 SHEET 3 AA6 6 ASN F 461 SER F 470 1 O ILE F 469 N PHE F 380 SHEET 4 AA6 6 ALA F 444 LYS F 458 -1 N VAL F 454 O HIS F 466 SHEET 5 AA6 6 ALA F 426 VAL F 438 -1 N ILE F 429 O ARG F 453 SHEET 6 AA6 6 ILE F 410 GLY F 423 -1 N HIS F 420 O CYS F 428 SHEET 1 AA7 6 VAL G 389 GLU G 390 0 SHEET 2 AA7 6 VAL G 373 PHE G 380 -1 N CYS G 379 O VAL G 389 SHEET 3 AA7 6 ASN G 461 SER G 470 1 O ILE G 469 N PHE G 380 SHEET 4 AA7 6 ALA G 444 LYS G 458 -1 N GLU G 450 O SER G 470 SHEET 5 AA7 6 ALA G 426 VAL G 438 -1 N ARG G 433 O GLN G 449 SHEET 6 AA7 6 ILE G 410 VAL G 421 -1 N HIS G 420 O CYS G 428 CISPEP 1 ARG D 406 SER D 407 0 -2.35 SITE 1 AC1 10 GLU B 381 PRO B 382 SER B 384 ASN B 385 SITE 2 AC1 10 GLY B 386 ASN B 387 GLU B 450 HIS B 468 SITE 3 AC1 10 ILE B 469 SER B 470 SITE 1 AC2 10 GLU A 450 SER A 470 GLU C 381 PRO C 382 SITE 2 AC2 10 SER C 384 ASN C 385 GLY C 386 HIS C 468 SITE 3 AC2 10 ILE C 469 SER C 470 CRYST1 78.466 180.100 179.511 90.00 90.00 90.00 C 2 2 21 56 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012744 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005571 0.00000