HEADER TRANSFERASE/ANTIBIOTIC 28-FEB-16 5IGJ TITLE MACROLIDE 2'-PHOSPHOTRANSFERASE TYPE I - COMPLEX WITH GUANOSINE AND TITLE 2 CLARITHROMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROLIDE 2'-PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MACROLIDE 2'-PHOSPHOTRANSFERASE I,MACROLIDE 2'- COMPND 5 PHOSPHOTRANSFERASE I MPH(A),MACROLIDE 2'-PHOSPHOTRANSFERASE MPH(A), COMPND 6 MACROLIDE 2-PHOSPHOTRANSFERASE,MACROLIDE 2-PHOSPHOTRANSFERASE COMPND 7 PROTEIN,MACROLIDE RESISTANCE PROTEIN,MACROLIDE-PHOSPHOTRANSFERASE, COMPND 8 MPH(A),MPH(A),MPH(A) MACROLIDE 2'-PHOSPHOTRANSFERASE I, COMPND 9 UNCHARACTERIZED PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: TF481A; SOURCE 5 GENE: MPHA, MPH(A), MPH2, AM267_25240, AM268_24740, AN205_25580, SOURCE 6 AN669_16770, ASU34_20250, AZ95_0038, ECONIH1_26770, ERS085366_04054, SOURCE 7 ERS085367_04848, ERS139269_04809, ERS150873_04753, ETN48_P0083, SOURCE 8 ORF00017, PCTXM123_C0996_11, PKC394-009, SK74_04859, SK86_03516, SOURCE 9 UN86_19875; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MACROLIDE PHOSPHOTRANSFERASE, KINASE, TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BERGHUIS,D.H.FONG REVDAT 6 27-SEP-23 5IGJ 1 REMARK REVDAT 5 08-JAN-20 5IGJ 1 REMARK REVDAT 4 13-SEP-17 5IGJ 1 REMARK REVDAT 3 17-MAY-17 5IGJ 1 JRNL REVDAT 2 03-MAY-17 5IGJ 1 JRNL REVDAT 1 26-APR-17 5IGJ 0 JRNL AUTH D.H.FONG,D.L.BURK,J.BLANCHET,A.Y.YAN,A.M.BERGHUIS JRNL TITL STRUCTURAL BASIS FOR KINASE-MEDIATED MACROLIDE ANTIBIOTIC JRNL TITL 2 RESISTANCE. JRNL REF STRUCTURE V. 25 750 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28416110 JRNL DOI 10.1016/J.STR.2017.03.007 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1034 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 57397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.460 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2011 - 3.3747 1.00 4459 161 0.1556 0.1631 REMARK 3 2 3.3747 - 2.6787 1.00 4189 150 0.1450 0.1576 REMARK 3 3 2.6787 - 2.3402 1.00 4152 149 0.1396 0.1571 REMARK 3 4 2.3402 - 2.1262 1.00 4101 148 0.1342 0.1735 REMARK 3 5 2.1262 - 1.9738 1.00 4063 143 0.1359 0.1449 REMARK 3 6 1.9738 - 1.8574 0.99 4076 145 0.1431 0.1521 REMARK 3 7 1.8574 - 1.7644 0.99 4040 147 0.1455 0.1615 REMARK 3 8 1.7644 - 1.6876 0.99 3992 141 0.1456 0.1824 REMARK 3 9 1.6876 - 1.6226 0.99 3993 147 0.1489 0.1872 REMARK 3 10 1.6226 - 1.5666 0.99 3948 137 0.1640 0.1982 REMARK 3 11 1.5666 - 1.5177 0.99 4004 144 0.1681 0.1818 REMARK 3 12 1.5177 - 1.4743 0.97 3915 140 0.1903 0.2352 REMARK 3 13 1.4743 - 1.4355 0.85 3446 126 0.2140 0.2394 REMARK 3 14 1.4355 - 1.4004 0.77 3031 110 0.2443 0.2596 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2615 REMARK 3 ANGLE : 1.397 3598 REMARK 3 CHIRALITY : 0.115 413 REMARK 3 PLANARITY : 0.007 463 REMARK 3 DIHEDRAL : 11.474 932 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:7) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0706 54.2236 293.4044 REMARK 3 T TENSOR REMARK 3 T11: 0.2465 T22: 0.2579 REMARK 3 T33: 0.1773 T12: -0.1183 REMARK 3 T13: -0.0243 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.0012 L22: 0.0053 REMARK 3 L33: 0.0109 L12: -0.0004 REMARK 3 L13: 0.0023 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: -0.0087 S13: 0.0298 REMARK 3 S21: -0.0384 S22: 0.0092 S23: 0.0451 REMARK 3 S31: -0.0294 S32: 0.0051 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 8:19) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7151 60.2904 281.8788 REMARK 3 T TENSOR REMARK 3 T11: 0.2767 T22: 0.1187 REMARK 3 T33: 0.2164 T12: 0.0143 REMARK 3 T13: -0.0276 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.0005 L22: 0.0039 REMARK 3 L33: 0.0036 L12: -0.0019 REMARK 3 L13: -0.0012 L23: 0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.0134 S13: 0.0753 REMARK 3 S21: 0.1431 S22: -0.0804 S23: -0.1029 REMARK 3 S31: -0.1795 S32: -0.0520 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 20:25) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5540 56.7427 285.6219 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.1767 REMARK 3 T33: 0.1536 T12: 0.0683 REMARK 3 T13: 0.0292 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.0042 L22: 0.0024 REMARK 3 L33: 0.0029 L12: 0.0024 REMARK 3 L13: 0.0040 L23: 0.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: 0.0714 S13: 0.0017 REMARK 3 S21: 0.0953 S22: 0.0221 S23: -0.0175 REMARK 3 S31: 0.0023 S32: -0.0693 S33: 0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 26:29) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4107 48.3311 287.4174 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.2173 REMARK 3 T33: -0.1795 T12: 0.0914 REMARK 3 T13: -0.1714 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.0101 L22: 0.0070 REMARK 3 L33: 0.0059 L12: -0.0037 REMARK 3 L13: -0.0001 L23: 0.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: 0.0177 S13: -0.0246 REMARK 3 S21: 0.0182 S22: 0.0286 S23: -0.0003 REMARK 3 S31: 0.0012 S32: 0.0256 S33: 0.0368 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 30:43) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9644 48.7991 279.0716 REMARK 3 T TENSOR REMARK 3 T11: 0.1196 T22: 0.1667 REMARK 3 T33: 0.1801 T12: 0.0194 REMARK 3 T13: 0.0476 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.0170 L22: 0.0178 REMARK 3 L33: 0.0146 L12: 0.0103 REMARK 3 L13: -0.0041 L23: -0.0233 REMARK 3 S TENSOR REMARK 3 S11: -0.1080 S12: -0.0613 S13: -0.0014 REMARK 3 S21: -0.0180 S22: -0.0516 S23: -0.2492 REMARK 3 S31: -0.0791 S32: 0.0410 S33: -0.0099 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 44:49) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2471 49.3743 283.5718 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1811 REMARK 3 T33: 0.1100 T12: 0.0491 REMARK 3 T13: 0.0357 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.0080 L22: 0.0018 REMARK 3 L33: 0.0073 L12: 0.0034 REMARK 3 L13: 0.0047 L23: 0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: -0.0007 S13: 0.0712 REMARK 3 S21: 0.0497 S22: 0.0993 S23: 0.1487 REMARK 3 S31: 0.0204 S32: -0.0316 S33: 0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 50:58) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6296 52.0839 272.4868 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.1764 REMARK 3 T33: 0.1386 T12: -0.0150 REMARK 3 T13: 0.0230 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.0076 L22: 0.0111 REMARK 3 L33: 0.0062 L12: 0.0019 REMARK 3 L13: -0.0007 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: -0.0050 S13: -0.0078 REMARK 3 S21: -0.0732 S22: -0.0397 S23: -0.2002 REMARK 3 S31: -0.0084 S32: 0.0083 S33: -0.0041 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 59:74) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1039 47.8361 263.3393 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.1615 REMARK 3 T33: 0.1293 T12: -0.0131 REMARK 3 T13: 0.0119 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.0631 L22: 0.0306 REMARK 3 L33: -0.0014 L12: 0.0145 REMARK 3 L13: 0.0169 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: 0.0451 S13: -0.0835 REMARK 3 S21: -0.0337 S22: 0.0223 S23: -0.0441 REMARK 3 S31: -0.1126 S32: 0.0373 S33: 0.0004 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 75:84) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9651 40.5174 267.9444 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.1632 REMARK 3 T33: 0.1089 T12: 0.0051 REMARK 3 T13: -0.0183 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.0174 L22: 0.0110 REMARK 3 L33: 0.0105 L12: 0.0043 REMARK 3 L13: -0.0077 L23: 0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: 0.0748 S13: 0.0211 REMARK 3 S21: -0.0897 S22: 0.0101 S23: 0.1496 REMARK 3 S31: -0.0516 S32: -0.2157 S33: -0.0052 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 85:102) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2637 46.9143 275.9649 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.1176 REMARK 3 T33: 0.0954 T12: 0.0057 REMARK 3 T13: -0.0005 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.0197 L22: 0.0381 REMARK 3 L33: 0.0694 L12: 0.0107 REMARK 3 L13: 0.0043 L23: 0.0648 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.0324 S13: 0.0402 REMARK 3 S21: 0.0223 S22: -0.0056 S23: 0.0392 REMARK 3 S31: -0.0156 S32: -0.0394 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 103:116) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7204 31.3597 282.5113 REMARK 3 T TENSOR REMARK 3 T11: -0.1310 T22: 0.0639 REMARK 3 T33: -0.0074 T12: 0.0696 REMARK 3 T13: -0.0823 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 0.1615 L22: 0.0441 REMARK 3 L33: 0.0909 L12: 0.0163 REMARK 3 L13: 0.1057 L23: -0.0235 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0577 S13: 0.1047 REMARK 3 S21: -0.0007 S22: -0.0274 S23: -0.0584 REMARK 3 S31: 0.0422 S32: 0.1224 S33: 0.0190 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 117:139) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0121 25.9992 267.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.0968 REMARK 3 T33: 0.0911 T12: -0.0274 REMARK 3 T13: -0.0054 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.0363 L22: 0.0463 REMARK 3 L33: 0.1092 L12: -0.0401 REMARK 3 L13: -0.0038 L23: 0.0258 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0317 S13: -0.0293 REMARK 3 S21: 0.0094 S22: -0.0580 S23: 0.0380 REMARK 3 S31: 0.1661 S32: -0.0746 S33: -0.0190 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 140:157) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6764 38.8137 251.0741 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.1451 REMARK 3 T33: 0.0806 T12: 0.0087 REMARK 3 T13: -0.0060 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.0266 L22: 0.0208 REMARK 3 L33: 0.0485 L12: 0.0170 REMARK 3 L13: 0.0378 L23: 0.0311 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: 0.0769 S13: 0.0397 REMARK 3 S21: -0.0704 S22: -0.0728 S23: -0.0311 REMARK 3 S31: -0.0944 S32: 0.0302 S33: -0.0190 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 158:171) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3310 37.0461 255.2616 REMARK 3 T TENSOR REMARK 3 T11: 0.0541 T22: 0.2051 REMARK 3 T33: 0.0948 T12: -0.0240 REMARK 3 T13: 0.0127 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.0754 L22: 0.4786 REMARK 3 L33: 0.1380 L12: 0.0186 REMARK 3 L13: 0.0395 L23: 0.2443 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: 0.1368 S13: 0.0475 REMARK 3 S21: -0.1964 S22: -0.0895 S23: -0.0602 REMARK 3 S31: -0.1379 S32: 0.2081 S33: -0.0595 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 172:185) REMARK 3 ORIGIN FOR THE GROUP (A): 48.1997 25.1519 255.1127 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.1420 REMARK 3 T33: 0.1620 T12: 0.0048 REMARK 3 T13: 0.0152 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.0311 L22: 0.0065 REMARK 3 L33: 0.0028 L12: 0.0019 REMARK 3 L13: -0.0056 L23: 0.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: 0.1185 S13: -0.0301 REMARK 3 S21: -0.0796 S22: 0.0039 S23: -0.1492 REMARK 3 S31: -0.0025 S32: 0.0635 S33: 0.0001 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 186:240) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3164 30.3372 264.8183 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: 0.1001 REMARK 3 T33: 0.0593 T12: -0.0016 REMARK 3 T13: -0.0030 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.1583 L22: 0.1720 REMARK 3 L33: 0.0685 L12: 0.0421 REMARK 3 L13: -0.0256 L23: 0.0882 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0228 S13: -0.0522 REMARK 3 S21: 0.0202 S22: -0.0096 S23: 0.0328 REMARK 3 S31: -0.0076 S32: 0.0262 S33: 0.0228 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 241:249) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1779 16.7072 265.9162 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.1338 REMARK 3 T33: 0.1966 T12: -0.0013 REMARK 3 T13: 0.0077 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.0044 L22: 0.0020 REMARK 3 L33: 0.0062 L12: 0.0012 REMARK 3 L13: 0.0007 L23: -0.0026 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: -0.0522 S13: -0.0618 REMARK 3 S21: 0.0073 S22: 0.0437 S23: -0.0458 REMARK 3 S31: 0.1122 S32: -0.0031 S33: 0.0021 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 250:278) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5262 24.5693 258.9405 REMARK 3 T TENSOR REMARK 3 T11: 0.0667 T22: 0.1341 REMARK 3 T33: 0.1187 T12: -0.0105 REMARK 3 T13: -0.0053 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.0687 L22: 0.0530 REMARK 3 L33: 0.0924 L12: 0.0066 REMARK 3 L13: -0.0746 L23: -0.0627 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: 0.0232 S13: -0.0482 REMARK 3 S21: -0.0436 S22: -0.0043 S23: 0.0152 REMARK 3 S31: 0.0141 S32: 0.0358 S33: 0.0001 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 279:301) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6966 36.8159 268.0510 REMARK 3 T TENSOR REMARK 3 T11: 0.0561 T22: 0.1964 REMARK 3 T33: 0.1514 T12: -0.0215 REMARK 3 T13: 0.0031 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.0399 L22: 0.0218 REMARK 3 L33: 0.1155 L12: 0.0032 REMARK 3 L13: 0.0144 L23: -0.0386 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: -0.2993 S13: 0.0737 REMARK 3 S21: 0.0542 S22: 0.0945 S23: -0.0368 REMARK 3 S31: 0.0421 S32: 0.1307 S33: 0.0200 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MARCH 5, 2012 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57398 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 41.183 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5IGH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CITRATE, 25% PEG 4000, 20% REMARK 280 ISOPROPANOL. 0.2 M AMMONIUM ACETATE, PH 6.2, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 164.73333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.36667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.36667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 164.73333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 78.28870 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 576.56667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 37 O HOH A 501 1.39 REMARK 500 O ASP A 174 HD1 HIS A 178 1.46 REMARK 500 HH21 ARG A 182 O HOH A 502 1.53 REMARK 500 O HOH A 701 O HOH A 832 1.94 REMARK 500 O HOH A 847 O HOH A 868 1.94 REMARK 500 O HOH A 792 O HOH A 831 2.06 REMARK 500 O HOH A 791 O HOH A 821 2.08 REMARK 500 O HOH A 519 O HOH A 691 2.08 REMARK 500 O HOH A 510 O HOH A 884 2.13 REMARK 500 O HOH A 813 O HOH A 883 2.14 REMARK 500 NH2 ARG A 37 O HOH A 501 2.15 REMARK 500 O HOH A 748 O HOH A 891 2.16 REMARK 500 O HOH A 704 O HOH A 814 2.17 REMARK 500 O HOH A 745 O HOH A 880 2.17 REMARK 500 O HOH A 522 O HOH A 536 2.17 REMARK 500 NH2 ARG A 182 O HOH A 502 2.18 REMARK 500 O HOH A 566 O HOH A 806 2.18 REMARK 500 O HOH A 572 O HOH A 620 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 826 O HOH A 889 1655 1.97 REMARK 500 O HOH A 804 O HOH A 843 5677 2.03 REMARK 500 O HOH A 716 O HOH A 857 5677 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 24 117.67 -162.46 REMARK 500 PRO A 78 35.29 -85.65 REMARK 500 ASP A 200 50.05 -145.17 REMARK 500 GLU A 212 17.20 82.99 REMARK 500 ASP A 219 67.22 62.41 REMARK 500 ASP A 226 -166.18 -166.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTY A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IGH RELATED DB: PDB REMARK 900 RELATED ID: 5IGI RELATED DB: PDB REMARK 900 RELATED ID: 5IGP RELATED DB: PDB REMARK 900 RELATED ID: 5IGR RELATED DB: PDB REMARK 900 RELATED ID: 5IGS RELATED DB: PDB REMARK 900 RELATED ID: 5IGT RELATED DB: PDB REMARK 900 RELATED ID: 5IGU RELATED DB: PDB REMARK 900 RELATED ID: 5IGV RELATED DB: PDB REMARK 900 RELATED ID: 5IGW RELATED DB: PDB REMARK 900 RELATED ID: 5IGY RELATED DB: PDB REMARK 900 RELATED ID: 5IGZ RELATED DB: PDB REMARK 900 RELATED ID: 5IH0 RELATED DB: PDB REMARK 900 RELATED ID: 5IH1 RELATED DB: PDB DBREF 5IGJ A 1 301 UNP Q47396 Q47396_ECOLX 1 301 SEQRES 1 A 301 MET THR VAL VAL THR THR ALA ASP THR SER GLN LEU TYR SEQRES 2 A 301 ALA LEU ALA ALA ARG HIS GLY LEU LYS LEU HIS GLY PRO SEQRES 3 A 301 LEU THR VAL ASN GLU LEU GLY LEU ASP TYR ARG ILE VAL SEQRES 4 A 301 ILE ALA THR VAL ASP ASP GLY ARG ARG TRP VAL LEU ARG SEQRES 5 A 301 ILE PRO ARG ARG ALA GLU VAL SER ALA LYS VAL GLU PRO SEQRES 6 A 301 GLU ALA ARG VAL LEU ALA MET LEU LYS ASN ARG LEU PRO SEQRES 7 A 301 PHE ALA VAL PRO ASP TRP ARG VAL ALA ASN ALA GLU LEU SEQRES 8 A 301 VAL ALA TYR PRO MET LEU GLU ASP SER THR ALA MET VAL SEQRES 9 A 301 ILE GLN PRO GLY SER SER THR PRO ASP TRP VAL VAL PRO SEQRES 10 A 301 GLN ASP SER GLU VAL PHE ALA GLU SER PHE ALA THR ALA SEQRES 11 A 301 LEU ALA ALA LEU HIS ALA VAL PRO ILE SER ALA ALA VAL SEQRES 12 A 301 ASP ALA GLY MET LEU ILE ARG THR PRO THR GLN ALA ARG SEQRES 13 A 301 GLN LYS VAL ALA ASP ASP VAL ASP ARG VAL ARG ARG GLU SEQRES 14 A 301 PHE VAL VAL ASN ASP LYS ARG LEU HIS ARG TRP GLN ARG SEQRES 15 A 301 TRP LEU ASP ASP ASP SER SER TRP PRO ASP PHE SER VAL SEQRES 16 A 301 VAL VAL HIS GLY ASP LEU TYR VAL GLY HIS VAL LEU ILE SEQRES 17 A 301 ASP ASN THR GLU ARG VAL SER GLY MET ILE ASP TRP SER SEQRES 18 A 301 GLU ALA ARG VAL ASP ASP PRO ALA ILE ASP MET ALA ALA SEQRES 19 A 301 HIS LEU MET VAL PHE GLY GLU GLU GLY LEU ALA LYS LEU SEQRES 20 A 301 LEU LEU THR TYR GLU ALA ALA GLY GLY ARG VAL TRP PRO SEQRES 21 A 301 ARG LEU ALA HIS HIS ILE ALA GLU ARG LEU ALA PHE GLY SEQRES 22 A 301 ALA VAL THR TYR ALA LEU PHE ALA LEU ASP SER GLY ASN SEQRES 23 A 301 GLU GLU TYR LEU ALA ALA ALA LYS ALA GLN LEU ALA ALA SEQRES 24 A 301 ALA GLU HET GMP A 401 32 HET CTY A 402 121 HET IPA A 403 12 HETNAM GMP GUANOSINE HETNAM CTY CLARITHROMYCIN HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 2 GMP C10 H13 N5 O5 FORMUL 3 CTY C38 H69 N O13 FORMUL 4 IPA C3 H8 O FORMUL 5 HOH *429(H2 O) HELIX 1 AA1 ASP A 8 ARG A 18 1 11 HELIX 2 AA2 ARG A 56 ALA A 61 1 6 HELIX 3 AA3 LYS A 62 LYS A 74 1 13 HELIX 4 AA4 ASN A 75 LEU A 77 5 3 HELIX 5 AA5 SER A 120 ALA A 136 1 17 HELIX 6 AA6 PRO A 138 ALA A 145 1 8 HELIX 7 AA7 THR A 151 PHE A 170 1 20 HELIX 8 AA8 ASN A 173 ASP A 185 1 13 HELIX 9 AA9 ASP A 186 TRP A 190 5 5 HELIX 10 AB1 TYR A 202 GLY A 204 5 3 HELIX 11 AB2 ASP A 227 ASP A 231 5 5 HELIX 12 AB3 MET A 232 ALA A 254 1 23 HELIX 13 AB4 ARG A 261 GLY A 285 1 25 HELIX 14 AB5 ASN A 286 ALA A 299 1 14 SHEET 1 AA1 5 LEU A 23 ASN A 30 0 SHEET 2 AA1 5 TYR A 36 VAL A 43 -1 O ILE A 38 N ASN A 30 SHEET 3 AA1 5 ARG A 48 PRO A 54 -1 O LEU A 51 N VAL A 39 SHEET 4 AA1 5 VAL A 92 PRO A 95 -1 O VAL A 92 N ARG A 52 SHEET 5 AA1 5 VAL A 86 ALA A 87 -1 N VAL A 86 O ALA A 93 SHEET 1 AA2 3 SER A 100 THR A 101 0 SHEET 2 AA2 3 VAL A 206 ILE A 208 -1 O ILE A 208 N SER A 100 SHEET 3 AA2 3 VAL A 214 MET A 217 -1 O SER A 215 N LEU A 207 SHEET 1 AA3 2 MET A 103 VAL A 104 0 SHEET 2 AA3 2 TRP A 114 VAL A 115 -1 O TRP A 114 N VAL A 104 SHEET 1 AA4 2 VAL A 195 VAL A 197 0 SHEET 2 AA4 2 ARG A 224 ASP A 226 -1 O ARG A 224 N VAL A 197 SITE 1 AC1 14 VAL A 50 TYR A 94 MET A 96 LEU A 97 SITE 2 AC1 14 ASP A 99 HIS A 205 ILE A 218 ASP A 219 SITE 3 AC1 14 HOH A 527 HOH A 607 HOH A 650 HOH A 708 SITE 4 AC1 14 HOH A 718 HOH A 783 SITE 1 AC2 13 MET A 103 PRO A 112 ASP A 200 TYR A 202 SITE 2 AC2 13 MET A 237 VAL A 238 PHE A 280 HOH A 540 SITE 3 AC2 13 HOH A 570 HOH A 572 HOH A 576 HOH A 674 SITE 4 AC2 13 HOH A 727 SITE 1 AC3 5 SER A 140 ILE A 149 THR A 151 PRO A 152 SITE 2 AC3 5 HOH A 571 CRYST1 45.200 45.200 247.100 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022124 0.012773 0.000000 0.00000 SCALE2 0.000000 0.025546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004047 0.00000