HEADER TRANSCRIPTION 28-FEB-16 5IGL TITLE CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF HUMAN TAF1L IN COMPLEX TITLE 2 WITH BROMOSPORINE (BSP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1-LIKE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAF(II)210,TBP-ASSOCIATED FACTOR 1-LIKE,TBP-ASSOCIATED COMPND 5 FACTOR 210 KDA,TRANSCRIPTION INITIATION FACTOR TFIID 210 KDA SUBUNIT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAF1L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, TAF1/TAFII250, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,S.PICAUD,I.FELLETAR,T.KROJER,C.TALLANT,F.VON DELFT, AUTHOR 2 A.M.EDWARDS,C.H.ARROWSMITH,C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 3 10-JAN-24 5IGL 1 REMARK REVDAT 2 02-NOV-16 5IGL 1 JRNL REVDAT 1 19-OCT-16 5IGL 0 JRNL AUTH S.PICAUD,K.LEONARDS,J.P.LAMBERT,O.DOVEY,C.WELLS,O.FEDOROV, JRNL AUTH 2 O.MONTEIRO,T.FUJISAWA,C.Y.WANG,H.LINGARD,C.TALLANT,N.NIKBIN, JRNL AUTH 3 L.GUETZOYAN,R.INGHAM,S.V.LEY,P.BRENNAN,S.MULLER,A.SAMSONOVA, JRNL AUTH 4 A.C.GINGRAS,J.SCHWALLER,G.VASSILIOU,S.KNAPP, JRNL AUTH 5 P.FILIPPAKOPOULOS JRNL TITL PROMISCUOUS TARGETING OF BROMODOMAINS BY BROMOSPORINE JRNL TITL 2 IDENTIFIES BET PROTEINS AS MASTER REGULATORS OF PRIMARY JRNL TITL 3 TRANSCRIPTION RESPONSE IN LEUKEMIA. JRNL REF SCI ADV V. 2 00760 2016 JRNL REFN ESSN 2375-2548 JRNL PMID 27757418 JRNL DOI 10.1126/SCIADV.1600760 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 695 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 937 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.4190 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1095 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.67000 REMARK 3 B22 (A**2) : -1.83000 REMARK 3 B33 (A**2) : -5.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.079 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1150 ; 0.025 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1048 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1570 ; 2.337 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2401 ; 1.299 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 138 ; 6.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;44.641 ;25.577 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 182 ;19.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;16.344 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 176 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1307 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 262 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 555 ;13.686 ; 8.938 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 554 ;13.701 ; 8.916 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 694 ;16.475 ;16.658 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 693 ;16.470 ;16.651 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 594 ;19.054 ;10.487 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 595 ;19.038 ;10.487 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 877 ;21.548 ;18.603 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1345 ;21.143 ;52.096 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1345 ;21.161 ;52.092 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1512 A 1556 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7202 34.1618 46.2618 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.0554 REMARK 3 T33: 0.1962 T12: -0.0052 REMARK 3 T13: 0.0353 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.0216 L22: 1.3478 REMARK 3 L33: 4.5084 L12: -0.1190 REMARK 3 L13: 0.1448 L23: 0.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.0085 S13: -0.0281 REMARK 3 S21: 0.0096 S22: -0.0268 S23: 0.0117 REMARK 3 S31: -0.2651 S32: -0.2985 S33: 0.0606 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1557 A 1628 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8277 36.4745 35.9441 REMARK 3 T TENSOR REMARK 3 T11: 0.4633 T22: 0.0414 REMARK 3 T33: 0.0719 T12: -0.0797 REMARK 3 T13: -0.0049 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.1380 L22: 1.5503 REMARK 3 L33: 1.8351 L12: 0.4514 REMARK 3 L13: 0.0781 L23: 0.2538 REMARK 3 S TENSOR REMARK 3 S11: -0.1460 S12: 0.0563 S13: -0.0259 REMARK 3 S21: -0.2954 S22: 0.1755 S23: -0.0801 REMARK 3 S31: -0.3336 S32: 0.1958 S33: -0.0296 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1629 A 1650 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1532 62.3109 61.6955 REMARK 3 T TENSOR REMARK 3 T11: 0.5706 T22: 0.0251 REMARK 3 T33: 0.4477 T12: -0.0263 REMARK 3 T13: -0.0616 T23: -0.0972 REMARK 3 L TENSOR REMARK 3 L11: 0.2167 L22: 21.0358 REMARK 3 L33: 11.5865 L12: -0.8105 REMARK 3 L13: -0.4904 L23: 15.5428 REMARK 3 S TENSOR REMARK 3 S11: -0.3072 S12: -0.0111 S13: 0.1166 REMARK 3 S21: -0.0534 S22: 0.0392 S23: 0.4212 REMARK 3 S31: -0.2700 S32: 0.0581 S33: 0.2679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13934 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : 0.02200 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GRC, 2NXB, 2OO1, 2OSS, 2OUO, 2RFJ, 3DAI, 3D7C, REMARK 200 3DWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 63%(V/V) MPD, 0.1M MMT PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.08600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.94600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.58850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.94600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.08600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.58850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.08600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.58850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.94600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.58850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.08600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.94600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1815 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1500 REMARK 465 HIS A 1501 REMARK 465 HIS A 1502 REMARK 465 HIS A 1503 REMARK 465 HIS A 1504 REMARK 465 HIS A 1505 REMARK 465 HIS A 1506 REMARK 465 SER A 1507 REMARK 465 SER A 1508 REMARK 465 GLY A 1509 REMARK 465 VAL A 1510 REMARK 465 ASP A 1511 REMARK 465 GLU A 1651 REMARK 465 SER A 1652 REMARK 465 LEU A 1653 REMARK 465 ASP A 1654 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A1558 CG OD1 OD2 REMARK 470 MET A1562 CG SD CE REMARK 470 LYS A1574 CD CE NZ REMARK 470 LYS A1578 CD CE NZ REMARK 470 GLU A1605 CG CD OE1 OE2 REMARK 470 GLN A1621 CD OE1 NE2 REMARK 470 LYS A1641 CG CD CE NZ REMARK 470 GLU A1642 CG CD OE1 OE2 REMARK 470 LEU A1645 CG CD1 CD2 REMARK 470 GLU A1646 CG CD OE1 OE2 REMARK 470 GLU A1649 CG CD OE1 OE2 REMARK 470 LEU A1650 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1817 O HOH A 1817 6555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A1527 CB SER A1527 OG 0.090 REMARK 500 ALA A1540 N ALA A1540 CA 0.133 REMARK 500 TRP A1545 CD1 TRP A1545 NE1 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1573 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A1537 -67.55 -104.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BMF A 1701 DBREF 5IGL A 1523 1654 UNP Q8IZX4 TAF1L_HUMAN 1523 1654 SEQADV 5IGL MET A 1500 UNP Q8IZX4 INITIATING METHIONINE SEQADV 5IGL HIS A 1501 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL HIS A 1502 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL HIS A 1503 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL HIS A 1504 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL HIS A 1505 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL HIS A 1506 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL SER A 1507 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL SER A 1508 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL GLY A 1509 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL VAL A 1510 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL ASP A 1511 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL LEU A 1512 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL GLY A 1513 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL THR A 1514 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL GLU A 1515 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL ASN A 1516 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL LEU A 1517 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL TYR A 1518 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL PHE A 1519 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL GLN A 1520 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL SER A 1521 UNP Q8IZX4 EXPRESSION TAG SEQADV 5IGL MET A 1522 UNP Q8IZX4 EXPRESSION TAG SEQRES 1 A 155 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 155 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLN VAL ALA SEQRES 3 A 155 PHE SER PHE ILE LEU ASP ASN ILE VAL THR GLN LYS MET SEQRES 4 A 155 MET ALA VAL PRO ASP SER TRP PRO PHE HIS HIS PRO VAL SEQRES 5 A 155 ASN LYS LYS PHE VAL PRO ASP TYR TYR LYS MET ILE VAL SEQRES 6 A 155 ASN PRO VAL ASP LEU GLU THR ILE ARG LYS ASN ILE SER SEQRES 7 A 155 LYS HIS LYS TYR GLN SER ARG GLU SER PHE LEU ASP ASP SEQRES 8 A 155 VAL ASN LEU ILE LEU ALA ASN SER VAL LYS TYR ASN GLY SEQRES 9 A 155 PRO GLU SER GLN TYR THR LYS THR ALA GLN GLU ILE VAL SEQRES 10 A 155 ASN ILE CYS TYR GLN THR ILE THR GLU TYR ASP GLU HIS SEQRES 11 A 155 LEU THR GLN LEU GLU LYS ASP ILE CYS THR ALA LYS GLU SEQRES 12 A 155 ALA ALA LEU GLU GLU ALA GLU LEU GLU SER LEU ASP HET BMF A1701 28 HETNAM BMF BROMOSPORINE HETSYN BMF ETHYL (3-METHYL-6-{4-METHYL-3-[(METHYLSULFONYL) HETSYN 2 BMF AMINO]PHENYL}[1,2,4]TRIAZOLO[4,3-B]PYRIDAZIN-8-YL) HETSYN 3 BMF CARBAMATE FORMUL 2 BMF C17 H20 N6 O4 S FORMUL 3 HOH *25(H2 O) HELIX 1 AA1 GLY A 1513 LYS A 1537 1 25 HELIX 2 AA2 SER A 1544 HIS A 1549 1 6 HELIX 3 AA3 ASP A 1558 ILE A 1563 1 6 HELIX 4 AA4 ASP A 1568 LYS A 1578 1 11 HELIX 5 AA5 SER A 1583 GLY A 1603 1 21 HELIX 6 AA6 SER A 1606 LEU A 1650 1 45 SSBOND 1 CYS A 1638 CYS A 1638 1555 7556 2.09 SITE 1 AC1 12 TRP A1545 PRO A1546 PHE A1547 HIS A1549 SITE 2 AC1 12 PRO A1550 VAL A1551 ASN A1552 TYR A1601 SITE 3 AC1 12 ASN A1602 TYR A1608 HOH A1801 HOH A1815 CRYST1 44.172 89.177 117.892 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008482 0.00000