HEADER LIGASE 29-FEB-16 5IHP TITLE CRYSTAL STRUCTURE OF COBYRINIC ACID A,C-DIAMIDE SYNTHASE FROM TITLE 2 MYCOBACTERIUM SMEGMATIS WITH BOUND ADP AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: COBYRINIC ACID A,C-DIAMIDE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / SOURCE 3 MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 GENE: MSMEG_1927; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, COBYRINIC ACID A, C-DIAMIDE SYNTHASE, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 27-SEP-23 5IHP 1 REMARK LINK REVDAT 3 06-JUL-16 5IHP 1 AUTHOR REMARK REVDAT 2 15-JUN-16 5IHP 1 AUTHOR JRNL REVDAT 1 30-MAR-16 5IHP 0 JRNL AUTH D.R.DAVIES,P.S.HORANYI,J.A.ABENDROTH,SSGCID JRNL TITL CRYSTAL STRUCTURE OF COBYRINIC ACID A,C-DIAMIDE SYNTHASE JRNL TITL 2 FROM MYCOBACTERIUM SMEGMATIS WITH BOUND ATP ANALOG AND JRNL TITL 3 MAGNESIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2299: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.530 REMARK 3 FREE R VALUE TEST SET COUNT : 1886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IHP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41651 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.07 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PFS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EBS INTERNAL TRACKING NUMBER 500 MM REMARK 280 NACL, 2 MM DTT, 0.025% SODIUM AZIDE, 5% GLYCEROL, 0.4 UL X 0.4 REMARK 280 UL DROP WITH JCSG SCREEN CONDITION F3: 20% (V/V) MPD, 100 MM REMARK 280 TRIS PH 8.0; 3 DAY SOAK WITH 5 MM ADP + 5 MM MGCL2; 20% ETHYLENE REMARK 280 GLYCOL CRYOPROTECTANT, PH 8.00, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.15500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.37500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.07750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.37500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.23250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.07750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.23250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.15500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1235 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 VAL A 224 REMARK 465 ARG A 225 REMARK 465 PHE A 226 REMARK 465 ALA A 227 REMARK 465 GLU A 228 REMARK 465 ALA A 229 REMARK 465 SER A 230 REMARK 465 ALA A 231 REMARK 465 SER A 232 REMARK 465 GLY A 233 REMARK 465 SER A 234 REMARK 465 SER A 235 REMARK 465 VAL A 236 REMARK 465 LEU A 237 REMARK 465 ALA A 238 REMARK 465 GLY A 239 REMARK 465 GLU A 271 REMARK 465 VAL A 272 REMARK 465 VAL A 273 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 VAL B 224 REMARK 465 ARG B 225 REMARK 465 PHE B 226 REMARK 465 ALA B 227 REMARK 465 GLU B 228 REMARK 465 ALA B 229 REMARK 465 SER B 230 REMARK 465 ALA B 231 REMARK 465 SER B 232 REMARK 465 GLY B 233 REMARK 465 SER B 234 REMARK 465 SER B 235 REMARK 465 VAL B 236 REMARK 465 LEU B 237 REMARK 465 ALA B 238 REMARK 465 GLY B 239 REMARK 465 ARG B 240 REMARK 465 GLU B 271 REMARK 465 VAL B 272 REMARK 465 VAL B 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 9 CG SD CE REMARK 470 MET A 107 CG SD CE REMARK 470 ARG A 210 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 THR A 223 OG1 CG2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 MET B 9 CG SD CE REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 106 CG CD1 CD2 REMARK 470 MET B 107 CG SD CE REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 ASP B 123 CG OD1 OD2 REMARK 470 ARG B 210 CG CD NE CZ NH1 NH2 REMARK 470 THR B 223 OG1 CG2 REMARK 470 LYS B 241 CG CD CE NZ REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 THR B 269 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 102 O HOH A 1101 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 123.24 179.80 REMARK 500 ALA A 23 30.68 74.17 REMARK 500 ASN A 180 77.50 -153.45 REMARK 500 ASN B 17 120.71 -178.81 REMARK 500 ALA B 23 30.71 79.79 REMARK 500 ILE B 178 -73.87 -132.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 25 OG1 REMARK 620 2 ADP A1001 O3B 93.2 REMARK 620 3 HOH A1111 O 85.9 176.2 REMARK 620 4 HOH A1113 O 85.2 94.8 88.8 REMARK 620 5 HOH A1142 O 92.1 90.5 85.8 174.2 REMARK 620 6 HOH A1157 O 171.2 93.4 87.9 88.5 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 25 OG1 REMARK 620 2 ADP B1001 O2B 97.0 REMARK 620 3 HOH B1101 O 91.5 87.3 REMARK 620 4 HOH B1107 O 89.0 92.6 179.5 REMARK 620 5 HOH B1111 O 172.6 90.3 87.7 91.8 REMARK 620 6 HOH B1131 O 86.8 175.0 89.4 90.6 85.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYSMA.11416.B RELATED DB: TARGETTRACK DBREF 5IHP A 9 273 UNP A0QTQ5 A0QTQ5_MYCS2 1 265 DBREF 5IHP B 9 273 UNP A0QTQ5 A0QTQ5_MYCS2 1 265 SEQADV 5IHP MET A 1 UNP A0QTQ5 INITIATING METHIONINE SEQADV 5IHP ALA A 2 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS A 3 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS A 4 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS A 5 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS A 6 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS A 7 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS A 8 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP MET B 1 UNP A0QTQ5 INITIATING METHIONINE SEQADV 5IHP ALA B 2 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS B 3 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS B 4 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS B 5 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS B 6 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS B 7 UNP A0QTQ5 EXPRESSION TAG SEQADV 5IHP HIS B 8 UNP A0QTQ5 EXPRESSION TAG SEQRES 1 A 273 MET ALA HIS HIS HIS HIS HIS HIS MET THR ARG VAL LEU SEQRES 2 A 273 ALA VAL ALA ASN GLN LYS GLY GLY VAL ALA LYS THR THR SEQRES 3 A 273 THR VAL ALA SER ILE GLY ALA ALA LEU THR GLU GLN GLY SEQRES 4 A 273 ARG ARG VAL LEU LEU VAL ASP LEU ASP PRO GLN GLY CYS SEQRES 5 A 273 LEU THR PHE SER LEU GLY HIS ASP PRO ASP LYS LEU PRO SEQRES 6 A 273 VAL SER VAL HIS GLU VAL LEU LEU GLY ASP VAL GLU PRO SEQRES 7 A 273 SER ALA ALA LEU VAL ARG THR ASP GLU GLY MET THR LEU SEQRES 8 A 273 LEU PRO ALA ASN ILE ASP LEU ALA GLY ALA GLU ALA MET SEQRES 9 A 273 LEU LEU MET ARG ALA GLY ARG GLU TYR ALA LEU LYS ARG SEQRES 10 A 273 ALA LEU ALA LYS LEU ASP GLY ASP PHE ASP VAL VAL ILE SEQRES 11 A 273 ILE ASP CYS PRO PRO SER LEU GLY VAL LEU THR LEU ASN SEQRES 12 A 273 GLY LEU THR ALA ALA HIS ASP VAL ILE VAL PRO LEU GLN SEQRES 13 A 273 CYS GLU THR LEU ALA HIS ARG GLY VAL GLY GLN PHE LEU SEQRES 14 A 273 ARG THR ILE SER ASP VAL GLN GLN ILE THR ASN PRO ASP SEQRES 15 A 273 LEU LYS LEU LEU GLY ALA LEU PRO THR LEU TYR ASP SER SEQRES 16 A 273 ARG THR THR HIS SER ARG ASP VAL LEU LEU ASP VAL ALA SEQRES 17 A 273 ASP ARG TYR GLU LEU PRO VAL LEU ALA PRO PRO ILE PRO SEQRES 18 A 273 ARG THR VAL ARG PHE ALA GLU ALA SER ALA SER GLY SER SEQRES 19 A 273 SER VAL LEU ALA GLY ARG LYS SER LYS GLY ALA ILE ALA SEQRES 20 A 273 TYR ARG GLU PHE ALA ASP ALA LEU LEU ARG HIS TRP LYS SEQRES 21 A 273 SER GLY ARG LYS MET PRO THR PHE THR PRO GLU VAL VAL SEQRES 1 B 273 MET ALA HIS HIS HIS HIS HIS HIS MET THR ARG VAL LEU SEQRES 2 B 273 ALA VAL ALA ASN GLN LYS GLY GLY VAL ALA LYS THR THR SEQRES 3 B 273 THR VAL ALA SER ILE GLY ALA ALA LEU THR GLU GLN GLY SEQRES 4 B 273 ARG ARG VAL LEU LEU VAL ASP LEU ASP PRO GLN GLY CYS SEQRES 5 B 273 LEU THR PHE SER LEU GLY HIS ASP PRO ASP LYS LEU PRO SEQRES 6 B 273 VAL SER VAL HIS GLU VAL LEU LEU GLY ASP VAL GLU PRO SEQRES 7 B 273 SER ALA ALA LEU VAL ARG THR ASP GLU GLY MET THR LEU SEQRES 8 B 273 LEU PRO ALA ASN ILE ASP LEU ALA GLY ALA GLU ALA MET SEQRES 9 B 273 LEU LEU MET ARG ALA GLY ARG GLU TYR ALA LEU LYS ARG SEQRES 10 B 273 ALA LEU ALA LYS LEU ASP GLY ASP PHE ASP VAL VAL ILE SEQRES 11 B 273 ILE ASP CYS PRO PRO SER LEU GLY VAL LEU THR LEU ASN SEQRES 12 B 273 GLY LEU THR ALA ALA HIS ASP VAL ILE VAL PRO LEU GLN SEQRES 13 B 273 CYS GLU THR LEU ALA HIS ARG GLY VAL GLY GLN PHE LEU SEQRES 14 B 273 ARG THR ILE SER ASP VAL GLN GLN ILE THR ASN PRO ASP SEQRES 15 B 273 LEU LYS LEU LEU GLY ALA LEU PRO THR LEU TYR ASP SER SEQRES 16 B 273 ARG THR THR HIS SER ARG ASP VAL LEU LEU ASP VAL ALA SEQRES 17 B 273 ASP ARG TYR GLU LEU PRO VAL LEU ALA PRO PRO ILE PRO SEQRES 18 B 273 ARG THR VAL ARG PHE ALA GLU ALA SER ALA SER GLY SER SEQRES 19 B 273 SER VAL LEU ALA GLY ARG LYS SER LYS GLY ALA ILE ALA SEQRES 20 B 273 TYR ARG GLU PHE ALA ASP ALA LEU LEU ARG HIS TRP LYS SEQRES 21 B 273 SER GLY ARG LYS MET PRO THR PHE THR PRO GLU VAL VAL HET ADP A1001 27 HET MG A1002 1 HET ADP B1001 27 HET MG B1002 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *277(H2 O) HELIX 1 AA1 ALA A 23 GLN A 38 1 16 HELIX 2 AA2 GLY A 51 LEU A 57 1 7 HELIX 3 AA3 ASP A 60 LEU A 64 5 5 HELIX 4 AA4 SER A 67 LEU A 73 1 7 HELIX 5 AA5 GLU A 77 LEU A 82 1 6 HELIX 6 AA6 ASN A 95 ALA A 99 5 5 HELIX 7 AA7 GLY A 100 LEU A 106 1 7 HELIX 8 AA8 GLY A 110 GLU A 112 5 3 HELIX 9 AA9 TYR A 113 LYS A 121 1 9 HELIX 10 AB1 GLY A 138 ALA A 148 1 11 HELIX 11 AB2 GLY A 164 THR A 179 1 16 HELIX 12 AB3 THR A 198 TYR A 211 1 14 HELIX 13 AB4 SER A 242 GLY A 262 1 21 HELIX 14 AB5 ALA B 23 GLN B 38 1 16 HELIX 15 AB6 GLY B 51 LEU B 57 1 7 HELIX 16 AB7 ASP B 60 LEU B 64 5 5 HELIX 17 AB8 SER B 67 LEU B 73 1 7 HELIX 18 AB9 GLU B 77 LEU B 82 1 6 HELIX 19 AC1 ASN B 95 ALA B 99 5 5 HELIX 20 AC2 GLY B 100 LEU B 106 1 7 HELIX 21 AC3 GLY B 110 GLU B 112 5 3 HELIX 22 AC4 TYR B 113 LEU B 122 1 10 HELIX 23 AC5 GLY B 138 ALA B 148 1 11 HELIX 24 AC6 GLY B 164 ILE B 178 1 15 HELIX 25 AC7 THR B 198 TYR B 211 1 14 HELIX 26 AC8 SER B 242 GLY B 262 1 21 SHEET 1 AA1 7 VAL A 83 ARG A 84 0 SHEET 2 AA1 7 THR A 90 LEU A 92 -1 O LEU A 91 N VAL A 83 SHEET 3 AA1 7 VAL A 42 ASP A 46 1 N LEU A 44 O LEU A 92 SHEET 4 AA1 7 VAL A 128 ASP A 132 1 O ASP A 132 N VAL A 45 SHEET 5 AA1 7 ARG A 11 VAL A 15 1 N LEU A 13 O VAL A 129 SHEET 6 AA1 7 ASP A 150 GLN A 156 1 O ASP A 150 N ALA A 14 SHEET 7 AA1 7 LYS A 184 THR A 191 1 O LEU A 189 N LEU A 155 SHEET 1 AA2 7 VAL B 83 ARG B 84 0 SHEET 2 AA2 7 THR B 90 LEU B 92 -1 O LEU B 91 N VAL B 83 SHEET 3 AA2 7 VAL B 42 ASP B 46 1 N LEU B 44 O THR B 90 SHEET 4 AA2 7 VAL B 128 ASP B 132 1 O ASP B 132 N VAL B 45 SHEET 5 AA2 7 ARG B 11 VAL B 15 1 N LEU B 13 O VAL B 129 SHEET 6 AA2 7 ASP B 150 GLN B 156 1 O ASP B 150 N ALA B 14 SHEET 7 AA2 7 LYS B 184 THR B 191 1 O LEU B 189 N LEU B 155 LINK OG1 THR A 25 MG MG A1002 1555 1555 2.16 LINK O3B ADP A1001 MG MG A1002 1555 1555 2.04 LINK MG MG A1002 O HOH A1111 1555 1555 2.23 LINK MG MG A1002 O HOH A1113 1555 1555 2.27 LINK MG MG A1002 O HOH A1142 1555 1555 2.15 LINK MG MG A1002 O HOH A1157 1555 1555 2.12 LINK OG1 THR B 25 MG MG B1002 1555 1555 2.07 LINK O2B ADP B1001 MG MG B1002 1555 1555 1.93 LINK MG MG B1002 O HOH B1101 1555 1555 2.08 LINK MG MG B1002 O HOH B1107 1555 1555 2.11 LINK MG MG B1002 O HOH B1111 1555 1555 2.28 LINK MG MG B1002 O HOH B1131 1555 1555 2.18 CISPEP 1 ALA A 217 PRO A 218 0 0.53 CISPEP 2 ALA B 217 PRO B 218 0 -7.38 SITE 1 AC1 18 GLY A 21 VAL A 22 ALA A 23 LYS A 24 SITE 2 AC1 18 THR A 25 THR A 26 PRO A 221 ARG A 222 SITE 3 AC1 18 THR A 223 MG A1002 HOH A1104 HOH A1107 SITE 4 AC1 18 HOH A1134 HOH A1142 HOH A1148 HOH A1157 SITE 5 AC1 18 HOH A1186 HOH A1217 SITE 1 AC2 6 THR A 25 ADP A1001 HOH A1111 HOH A1113 SITE 2 AC2 6 HOH A1142 HOH A1157 SITE 1 AC3 16 GLY B 21 VAL B 22 ALA B 23 LYS B 24 SITE 2 AC3 16 THR B 25 THR B 26 LEU B 192 PRO B 221 SITE 3 AC3 16 ARG B 222 THR B 223 MG B1002 HOH B1101 SITE 4 AC3 16 HOH B1103 HOH B1107 HOH B1111 HOH B1159 SITE 1 AC4 6 THR B 25 ADP B1001 HOH B1101 HOH B1107 SITE 2 AC4 6 HOH B1111 HOH B1131 CRYST1 88.750 88.750 120.310 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008312 0.00000