HEADER CELL ADHESION 01-MAR-16 5II4 TITLE CRYSTAL STRUCTURE OF RED ABALONE VERL REPEAT 1 WITH LINKER AT 2.0 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,VITELLINE ENVELOPE COMPND 3 SPERM LYSIN RECEPTOR; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THIS PROTEIN IS A CHIMERA. RESIDUES 3668-4034 ARE FROM COMPND 9 E. COLI MALTOSE BINDING PROTEIN (MBP), CORRESPOND TO RESIDUES 27-393 COMPND 10 OF SWISS-PROT DATABASE ENTRY P0AEX9 AND CONTAIN MUTATIONS I3669T, COMPND 11 D3749A, K3750A, E3839A, N3840A, A3882H, K3886H, K3906A, A3979V, COMPND 12 I3984V, E4026A, E4029A, D4030A AND R4034N (CORRESPONDING TO I28T, COMPND 13 D108A, K109A, E198A, N199A, A241H, K245H, K265A, A338V, I343V, E385A, COMPND 14 E388A, D389A AND R393N IN P0AEX9). RESIDUES 4038-4175 ARE FROM RED COMPND 15 ABALONE VITELLINE ENVELOPE SPERM LYSIN RECEPTOR AND CORRESPOND TO COMPND 16 RESIDUES 38-175 OF SWISS-PROT DATABASE ENTRY Q8WR62 AND CONTAIN COMPND 17 MUTATIONS N4115Q, N4122T, N4142Y AND N4171Q (CORRESPONDING TO N115Q, COMPND 18 N122T, N142Y AND N171Q). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7, HALIOTIS RUFESCENS; SOURCE 3 ORGANISM_COMMON: CALIFORNIA RED ABALONE; SOURCE 4 ORGANISM_TAXID: 83334, 6454; SOURCE 5 GENE: MALE, Z5632, ECS5017, VERL; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK-293T; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS CELL ADHESION, FERTILIZATION, EGG-SPERM INTERACTION, GAMETE KEYWDS 2 RECOGNITION, VITELLINE ENVELOPE, SPERM RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR H.SADAT AL-HOSSEINI,I.RAJ,K.NISHIMURA,L.JOVINE REVDAT 7 16-OCT-24 5II4 1 REMARK REVDAT 6 10-JAN-24 5II4 1 HETSYN REVDAT 5 29-JUL-20 5II4 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 29-NOV-17 5II4 1 REMARK REVDAT 3 06-SEP-17 5II4 1 REMARK REVDAT 2 28-JUN-17 5II4 1 JRNL REVDAT 1 14-JUN-17 5II4 0 JRNL AUTH I.RAJ,H.SADAT AL HOSSEINI,E.DIOGUARDI,K.NISHIMURA,L.HAN, JRNL AUTH 2 A.VILLA,D.DE SANCTIS,L.JOVINE JRNL TITL STRUCTURAL BASIS OF EGG COAT-SPERM RECOGNITION AT JRNL TITL 2 FERTILIZATION. JRNL REF CELL V. 169 1315 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28622512 JRNL DOI 10.1016/J.CELL.2017.05.033 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.J.SWANSON,J.E.AAGAARD,V.D.VACQUIER,M.MONNE, REMARK 1 AUTH 2 H.SADAT AL HOSSEINI,L.JOVINE REMARK 1 TITL THE MOLECULAR BASIS OF SEX: LINKING YEAST TO HUMAN. REMARK 1 REF MOL. BIOL. EVOL. V. 28 1963 2011 REMARK 1 REFN ESSN 1537-1719 REMARK 1 PMID 21282709 REMARK 1 DOI 10.1093/MOLBEV/MSR026 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.E.AAGAARD,X.YI,M.J.MACCOSS,W.J.SWANSON REMARK 1 TITL RAPIDLY EVOLVING ZONA PELLUCIDA DOMAIN PROTEINS ARE A MAJOR REMARK 1 TITL 2 COMPONENT OF THE VITELLINE ENVELOPE OF ABALONE EGGS. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 103 17302 2006 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 17085584 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.E.GALINDO,G.W.MOY,W.J.SWANSON,V.D.VACQUIER REMARK 1 TITL FULL-LENGTH SEQUENCE OF VERL, THE EGG VITELLINE ENVELOPE REMARK 1 TITL 2 RECEPTOR FOR ABALONE SPERM LYSIN. REMARK 1 REF GENE V. 288 111 2002 REMARK 1 REFN ISSN 0378-1119 REMARK 1 PMID 12034500 REMARK 1 REFERENCE 4 REMARK 1 AUTH W.J.SWANSON,V.D.VACQUIER REMARK 1 TITL THE ABALONE EGG VITELLINE ENVELOPE RECEPTOR FOR SPERM LYSIN REMARK 1 TITL 2 IS A GIANT MULTIVALENT MOLECULE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 94 6724 1997 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 9192632 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV-1894_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 44558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0035 - 5.0379 0.94 2802 160 0.1969 0.2180 REMARK 3 2 5.0379 - 3.9994 0.96 2672 135 0.1616 0.1939 REMARK 3 3 3.9994 - 3.4940 0.97 2646 150 0.1829 0.2387 REMARK 3 4 3.4940 - 3.1747 0.98 2664 148 0.1989 0.2631 REMARK 3 5 3.1747 - 2.9472 0.98 2643 133 0.2223 0.2358 REMARK 3 6 2.9472 - 2.7734 0.98 2643 156 0.2168 0.2288 REMARK 3 7 2.7734 - 2.6345 0.98 2635 139 0.2181 0.2394 REMARK 3 8 2.6345 - 2.5199 0.99 2632 140 0.2313 0.2483 REMARK 3 9 2.5199 - 2.4229 0.99 2630 142 0.2487 0.2510 REMARK 3 10 2.4229 - 2.3393 0.99 2628 141 0.2559 0.2729 REMARK 3 11 2.3393 - 2.2661 0.99 2616 139 0.2735 0.3102 REMARK 3 12 2.2661 - 2.2013 0.99 2625 143 0.3218 0.3261 REMARK 3 13 2.2013 - 2.1434 0.99 2618 136 0.3141 0.3478 REMARK 3 14 2.1434 - 2.0911 0.99 2630 144 0.3472 0.3350 REMARK 3 15 2.0911 - 2.0436 0.99 2616 135 0.3812 0.3763 REMARK 3 16 2.0436 - 2.0001 0.97 2571 146 0.3983 0.4106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3850 REMARK 3 ANGLE : 0.907 5222 REMARK 3 CHIRALITY : 0.038 577 REMARK 3 PLANARITY : 0.005 662 REMARK 3 DIHEDRAL : 11.135 1401 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESI 39:407 OR RESI 900) REMARK 3 ORIGIN FOR THE GROUP (A): 69.9379 59.3315 10.2657 REMARK 3 T TENSOR REMARK 3 T11: 0.3134 T22: 0.3727 REMARK 3 T33: 0.3983 T12: -0.0512 REMARK 3 T13: 0.0104 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.1043 L22: 0.7239 REMARK 3 L33: 3.5507 L12: 0.2681 REMARK 3 L13: -0.4132 L23: -0.6304 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0889 S13: 0.1288 REMARK 3 S21: 0.0149 S22: 0.0409 S23: 0.1029 REMARK 3 S31: -0.3148 S32: -0.2781 S33: 0.0040 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 408:515 REMARK 3 ORIGIN FOR THE GROUP (A): 95.2922 44.7573 -6.1313 REMARK 3 T TENSOR REMARK 3 T11: 0.4263 T22: 0.6816 REMARK 3 T33: 0.4761 T12: -0.0023 REMARK 3 T13: 0.0297 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.8226 L22: 0.7076 REMARK 3 L33: 1.4943 L12: -1.0584 REMARK 3 L13: -0.1988 L23: 0.4013 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: -0.2156 S13: -0.2447 REMARK 3 S21: -0.1942 S22: 0.1601 S23: 0.0039 REMARK 3 S31: 0.1177 S32: 0.5526 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5II4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20141103 REMARK 200 DATA SCALING SOFTWARE : XDS 20141103 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44601 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.991 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.10270 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 1.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SET, 3SEX AND 4WRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 600, 0.1M CHES, PH 9.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.56667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.28333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.92500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.64167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 163.20833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 130.56667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.28333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.64167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 97.92500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 163.20833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 3659 REMARK 465 THR A 3660 REMARK 465 GLY A 3661 REMARK 465 HIS A 3662 REMARK 465 HIS A 3663 REMARK 465 HIS A 3664 REMARK 465 HIS A 3665 REMARK 465 HIS A 3666 REMARK 465 HIS A 3667 REMARK 465 LYS A 3668 REMARK 465 SER A 4146 REMARK 465 GLN A 4147 REMARK 465 ALA A 4148 REMARK 465 SER A 4149 REMARK 465 ASN A 4150 REMARK 465 ALA A 4151 REMARK 465 PRO A 4152 REMARK 465 GLU A 4153 REMARK 465 PRO A 4154 REMARK 465 LYS A 4155 REMARK 465 ALA A 4156 REMARK 465 SER A 4157 REMARK 465 PRO A 4158 REMARK 465 THR A 4159 REMARK 465 SER A 4160 REMARK 465 SER A 4161 REMARK 465 THR A 4162 REMARK 465 PRO A 4163 REMARK 465 GLN A 4164 REMARK 465 PRO A 4165 REMARK 465 GLU A 4166 REMARK 465 ALA A 4167 REMARK 465 ALA A 4168 REMARK 465 SER A 4169 REMARK 465 HIS A 4170 REMARK 465 GLN A 4171 REMARK 465 GLN A 4172 REMARK 465 SER A 4173 REMARK 465 LYS A 4174 REMARK 465 LEU A 4175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A3775 -58.95 -122.65 REMARK 500 ALA A3835 -74.14 -80.16 REMARK 500 ALA A3840 -117.82 56.51 REMARK 500 TYR A3950 -63.13 -126.74 REMARK 500 GLN A4094 -2.13 75.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5II5 RELATED DB: PDB REMARK 900 RELATED ENTRY UNDER SUBMISSION REMARK 900 RELATED ID: 5IIC RELATED DB: PDB REMARK 900 RELATED ENTRY UNDER SUBMISSION REMARK 900 RELATED ID: 3D4C RELATED DB: PDB REMARK 900 RELATED ID: 3D4G RELATED DB: PDB REMARK 900 RELATED ID: 3EF7 RELATED DB: PDB REMARK 900 RELATED ID: 3NK3 RELATED DB: PDB REMARK 900 RELATED ID: 3NK4 RELATED DB: PDB REMARK 900 RELATED ID: 5II6 RELATED DB: PDB REMARK 900 RELATED ENTRY UNDER SUBMISSION REMARK 900 RELATED ID: 5IIA RELATED DB: PDB REMARK 900 RELATED ENTRY UNDER SUBMISSION REMARK 900 RELATED ID: 5IIB RELATED DB: PDB REMARK 900 RELATED ENTRY UNDER SUBMISSION DBREF 5II4 A 3668 4034 UNP P0AEY0 MALE_ECO57 27 393 DBREF 5II4 A 4038 4175 UNP Q8WR62 Q8WR62_HALRU 38 175 SEQADV 5II4 GLU A 3659 UNP P0AEY0 EXPRESSION TAG SEQADV 5II4 THR A 3660 UNP P0AEY0 EXPRESSION TAG SEQADV 5II4 GLY A 3661 UNP P0AEY0 EXPRESSION TAG SEQADV 5II4 HIS A 3662 UNP P0AEY0 EXPRESSION TAG SEQADV 5II4 HIS A 3663 UNP P0AEY0 EXPRESSION TAG SEQADV 5II4 HIS A 3664 UNP P0AEY0 EXPRESSION TAG SEQADV 5II4 HIS A 3665 UNP P0AEY0 EXPRESSION TAG SEQADV 5II4 HIS A 3666 UNP P0AEY0 EXPRESSION TAG SEQADV 5II4 HIS A 3667 UNP P0AEY0 EXPRESSION TAG SEQADV 5II4 THR A 3669 UNP P0AEY0 ILE 28 ENGINEERED MUTATION SEQADV 5II4 ALA A 3749 UNP P0AEY0 ASP 108 ENGINEERED MUTATION SEQADV 5II4 ALA A 3750 UNP P0AEY0 LYS 109 ENGINEERED MUTATION SEQADV 5II4 ALA A 3839 UNP P0AEY0 GLU 198 ENGINEERED MUTATION SEQADV 5II4 ALA A 3840 UNP P0AEY0 ASN 199 ENGINEERED MUTATION SEQADV 5II4 HIS A 3882 UNP P0AEY0 ALA 241 ENGINEERED MUTATION SEQADV 5II4 HIS A 3886 UNP P0AEY0 LYS 245 ENGINEERED MUTATION SEQADV 5II4 ALA A 3906 UNP P0AEY0 LYS 265 ENGINEERED MUTATION SEQADV 5II4 VAL A 3979 UNP P0AEY0 ALA 338 ENGINEERED MUTATION SEQADV 5II4 VAL A 3984 UNP P0AEY0 ILE 343 ENGINEERED MUTATION SEQADV 5II4 ALA A 4026 UNP P0AEY0 GLU 385 ENGINEERED MUTATION SEQADV 5II4 ALA A 4029 UNP P0AEY0 LYS 388 ENGINEERED MUTATION SEQADV 5II4 ALA A 4030 UNP P0AEY0 ASP 389 ENGINEERED MUTATION SEQADV 5II4 ASN A 4034 UNP P0AEY0 ARG 393 ENGINEERED MUTATION SEQADV 5II4 ALA A 4035 UNP P0AEY0 LINKER SEQADV 5II4 ALA A 4036 UNP P0AEY0 LINKER SEQADV 5II4 ALA A 4037 UNP P0AEY0 LINKER SEQADV 5II4 GLN A 4115 UNP Q8WR62 ASN 115 ENGINEERED MUTATION SEQADV 5II4 THR A 4122 UNP Q8WR62 ASN 122 ENGINEERED MUTATION SEQADV 5II4 TYR A 4142 UNP Q8WR62 ASN 142 ENGINEERED MUTATION SEQADV 5II4 GLN A 4171 UNP Q8WR62 ASN 171 ENGINEERED MUTATION SEQRES 1 A 517 GLU THR GLY HIS HIS HIS HIS HIS HIS LYS THR GLU GLU SEQRES 2 A 517 GLY LYS LEU VAL ILE TRP ILE ASN GLY ASP LYS GLY TYR SEQRES 3 A 517 ASN GLY LEU ALA GLU VAL GLY LYS LYS PHE GLU LYS ASP SEQRES 4 A 517 THR GLY ILE LYS VAL THR VAL GLU HIS PRO ASP LYS LEU SEQRES 5 A 517 GLU GLU LYS PHE PRO GLN VAL ALA ALA THR GLY ASP GLY SEQRES 6 A 517 PRO ASP ILE ILE PHE TRP ALA HIS ASP ARG PHE GLY GLY SEQRES 7 A 517 TYR ALA GLN SER GLY LEU LEU ALA GLU ILE THR PRO ALA SEQRES 8 A 517 ALA ALA PHE GLN ASP LYS LEU TYR PRO PHE THR TRP ASP SEQRES 9 A 517 ALA VAL ARG TYR ASN GLY LYS LEU ILE ALA TYR PRO ILE SEQRES 10 A 517 ALA VAL GLU ALA LEU SER LEU ILE TYR ASN LYS ASP LEU SEQRES 11 A 517 LEU PRO ASN PRO PRO LYS THR TRP GLU GLU ILE PRO ALA SEQRES 12 A 517 LEU ASP LYS GLU LEU LYS ALA LYS GLY LYS SER ALA LEU SEQRES 13 A 517 MET PHE ASN LEU GLN GLU PRO TYR PHE THR TRP PRO LEU SEQRES 14 A 517 ILE ALA ALA ASP GLY GLY TYR ALA PHE LYS TYR ALA ALA SEQRES 15 A 517 GLY LYS TYR ASP ILE LYS ASP VAL GLY VAL ASP ASN ALA SEQRES 16 A 517 GLY ALA LYS ALA GLY LEU THR PHE LEU VAL ASP LEU ILE SEQRES 17 A 517 LYS ASN LYS HIS MET ASN ALA ASP THR ASP TYR SER ILE SEQRES 18 A 517 ALA GLU HIS ALA PHE ASN HIS GLY GLU THR ALA MET THR SEQRES 19 A 517 ILE ASN GLY PRO TRP ALA TRP SER ASN ILE ASP THR SER SEQRES 20 A 517 ALA VAL ASN TYR GLY VAL THR VAL LEU PRO THR PHE LYS SEQRES 21 A 517 GLY GLN PRO SER LYS PRO PHE VAL GLY VAL LEU SER ALA SEQRES 22 A 517 GLY ILE ASN ALA ALA SER PRO ASN LYS GLU LEU ALA LYS SEQRES 23 A 517 GLU PHE LEU GLU ASN TYR LEU LEU THR ASP GLU GLY LEU SEQRES 24 A 517 GLU ALA VAL ASN LYS ASP LYS PRO LEU GLY ALA VAL ALA SEQRES 25 A 517 LEU LYS SER TYR GLU GLU GLU LEU VAL LYS ASP PRO ARG SEQRES 26 A 517 VAL ALA ALA THR MET GLU ASN ALA GLN LYS GLY GLU ILE SEQRES 27 A 517 MET PRO ASN ILE PRO GLN MET SER ALA PHE TRP TYR ALA SEQRES 28 A 517 VAL ARG THR ALA VAL ILE ASN ALA ALA SER GLY ARG GLN SEQRES 29 A 517 THR VAL ASP ALA ALA LEU ALA ALA ALA GLN THR ASN ALA SEQRES 30 A 517 ALA ALA ASP LEU THR LEU VAL CYS SER ASP ASP LYS SER SEQRES 31 A 517 LYS GLN ALA THR LEU ILE SER TYR PRO VAL THR PHE LYS SEQRES 32 A 517 GLY HIS VAL ILE LYS ASP MET GLN ILE PHE CYS LYS ASN SEQRES 33 A 517 GLY TRP MET GLN MET THR ARG GLY ARG GLY ILE ASN MET SEQRES 34 A 517 ILE ARG ILE HIS TYR PRO GLN THR TYR THR SER VAL VAL SEQRES 35 A 517 PRO GLY ALA CYS VAL PHE ARG GLY PRO TYR SER VAL PRO SEQRES 36 A 517 THR GLN ASP SER ILE GLU MET TYR THR VAL SER VAL ALA SEQRES 37 A 517 LEU LEU TRP SER ASP GLY THR PRO THR TYR GLU SER LEU SEQRES 38 A 517 GLU CYS TYR VAL THR LYS SER GLN ALA SER ASN ALA PRO SEQRES 39 A 517 GLU PRO LYS ALA SER PRO THR SER SER THR PRO GLN PRO SEQRES 40 A 517 GLU ALA ALA SER HIS GLN GLN SER LYS LEU HET GLC B 1 22 HET GLC B 2 22 HET PGE A4202 24 HET PGE A4203 24 HET PGE A4204 24 HET PGE A4205 24 HET PGE A4206 24 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM PGE TRIETHYLENE GLYCOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 PGE 5(C6 H14 O4) FORMUL 8 HOH *121(H2 O) HELIX 1 AA1 GLY A 3683 GLY A 3699 1 17 HELIX 2 AA2 LYS A 3709 ALA A 3719 1 11 HELIX 3 AA3 ARG A 3733 SER A 3740 1 8 HELIX 4 AA4 ALA A 3749 LEU A 3756 1 8 HELIX 5 AA5 TYR A 3757 VAL A 3764 1 8 HELIX 6 AA6 THR A 3795 GLU A 3797 5 3 HELIX 7 AA7 GLU A 3798 ALA A 3808 1 11 HELIX 8 AA8 GLU A 3820 ASP A 3831 1 12 HELIX 9 AA9 ASN A 3852 ASN A 3868 1 17 HELIX 10 AB1 ASP A 3876 HIS A 3886 1 11 HELIX 11 AB2 GLY A 3895 TRP A 3897 5 3 HELIX 12 AB3 ALA A 3898 SER A 3905 1 8 HELIX 13 AB4 ASN A 3939 TYR A 3950 1 12 HELIX 14 AB5 THR A 3953 LYS A 3964 1 12 HELIX 15 AB6 LEU A 3971 VAL A 3979 1 9 HELIX 16 AB7 ASP A 3981 GLY A 3994 1 14 HELIX 17 AB8 GLN A 4002 SER A 4019 1 18 HELIX 18 AB9 THR A 4023 ASP A 4038 1 16 SHEET 1 AA1 6 VAL A3702 GLU A3705 0 SHEET 2 AA1 6 LEU A3674 TRP A3677 1 N ILE A3676 O THR A3703 SHEET 3 AA1 6 ILE A3726 ALA A3730 1 O PHE A3728 N TRP A3677 SHEET 4 AA1 6 PHE A3925 ILE A3933 -1 O GLY A3932 N ILE A3727 SHEET 5 AA1 6 TYR A3773 GLU A3778 -1 N GLU A3778 O GLY A3927 SHEET 6 AA1 6 ALA A3968 VAL A3969 -1 O ALA A3968 N VAL A3777 SHEET 1 AA2 5 VAL A3702 GLU A3705 0 SHEET 2 AA2 5 LEU A3674 TRP A3677 1 N ILE A3676 O THR A3703 SHEET 3 AA2 5 ILE A3726 ALA A3730 1 O PHE A3728 N TRP A3677 SHEET 4 AA2 5 PHE A3925 ILE A3933 -1 O GLY A3932 N ILE A3727 SHEET 5 AA2 5 GLU A3995 ILE A3996 1 O GLU A3995 N VAL A3926 SHEET 1 AA3 2 ARG A3765 TYR A3766 0 SHEET 2 AA3 2 LYS A3769 LEU A3770 -1 O LYS A3769 N TYR A3766 SHEET 1 AA4 4 SER A3812 LEU A3814 0 SHEET 2 AA4 4 THR A3889 ASN A3894 1 O ALA A3890 N SER A3812 SHEET 3 AA4 4 SER A3781 ASN A3785 -1 N ILE A3783 O THR A3892 SHEET 4 AA4 4 TYR A3909 THR A3912 -1 O THR A3912 N LEU A3782 SHEET 1 AA5 2 TYR A3834 ALA A3839 0 SHEET 2 AA5 2 LYS A3842 GLY A3849 -1 O ASP A3844 N LYS A3837 SHEET 1 AA6 4 LEU A4039 VAL A4042 0 SHEET 2 AA6 4 ALA A4051 SER A4055 -1 O ILE A4054 N THR A4040 SHEET 3 AA6 4 ASN A4086 HIS A4091 -1 O ILE A4088 N LEU A4053 SHEET 4 AA6 4 CYS A4104 VAL A4105 1 O CYS A4104 N HIS A4091 SHEET 1 AA7 4 GLY A4075 MET A4079 0 SHEET 2 AA7 4 ILE A4065 CYS A4072 -1 N ILE A4070 O MET A4077 SHEET 3 AA7 4 ILE A4118 TRP A4129 -1 O ALA A4126 N GLN A4069 SHEET 4 AA7 4 ARG A4107 SER A4111 -1 N ARG A4107 O THR A4122 SHEET 1 AA8 4 GLY A4075 MET A4079 0 SHEET 2 AA8 4 ILE A4065 CYS A4072 -1 N ILE A4070 O MET A4077 SHEET 3 AA8 4 ILE A4118 TRP A4129 -1 O ALA A4126 N GLN A4069 SHEET 4 AA8 4 PRO A4134 THR A4144 -1 O THR A4135 N LEU A4127 SSBOND 1 CYS A 4043 CYS A 4141 1555 1555 2.04 SSBOND 2 CYS A 4072 CYS A 4104 1555 1555 2.03 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.41 CISPEP 1 GLY A 4108 PRO A 4109 0 3.71 CRYST1 107.120 107.120 195.850 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009335 0.005390 0.000000 0.00000 SCALE2 0.000000 0.010780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005106 0.00000