HEADER LYASE 03-MAR-16 5IK6 TITLE TOBACCO 5-EPI-ARISTOLOCHENE SYNTHASE WITH GERMACRENE A AND PPI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-EPI-ARISTOLOCHENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EAS; COMPND 5 EC: 4.2.3.61; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: EAS3, EAS4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PH9GW KEYWDS TERPENE SYNTHASE, TEAS, GERMACRENE A, DIPHOSPHATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.KOO,Y.XU,G.V.LOUIE,M.BOWMAN,J.P.NOEL REVDAT 2 27-SEP-23 5IK6 1 JRNL REMARK LINK REVDAT 1 05-OCT-16 5IK6 0 JRNL AUTH H.J.KOO,C.R.VICKERY,Y.XU,G.V.LOUIE,P.E.O'MAILLE,M.BOWMAN, JRNL AUTH 2 C.M.NARTEY,M.D.BURKART,J.P.NOEL JRNL TITL BIOSYNTHETIC POTENTIAL OF SESQUITERPENE SYNTHASES: PRODUCT JRNL TITL 2 PROFILES OF EGYPTIAN HENBANE PREMNASPIRODIENE SYNTHASE AND JRNL TITL 3 RELATED MUTANTS. JRNL REF J.ANTIBIOT. V. 69 524 2016 JRNL REFN ISSN 0021-8820 JRNL PMID 27328867 JRNL DOI 10.1038/JA.2016.68 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 42147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1412 - 5.6686 1.00 3073 157 0.1309 0.1633 REMARK 3 2 5.6686 - 4.5008 1.00 2899 171 0.1330 0.1719 REMARK 3 3 4.5008 - 3.9322 1.00 2898 145 0.1286 0.1501 REMARK 3 4 3.9322 - 3.5729 1.00 2855 140 0.1571 0.1883 REMARK 3 5 3.5729 - 3.3169 1.00 2824 156 0.1695 0.2151 REMARK 3 6 3.3169 - 3.1214 1.00 2847 145 0.1807 0.2466 REMARK 3 7 3.1214 - 2.9651 1.00 2826 138 0.1823 0.2253 REMARK 3 8 2.9651 - 2.8360 1.00 2807 153 0.1919 0.2235 REMARK 3 9 2.8360 - 2.7269 1.00 2818 153 0.1837 0.2325 REMARK 3 10 2.7269 - 2.6328 0.87 2428 119 0.1977 0.1986 REMARK 3 11 2.6328 - 2.5505 0.83 2348 126 0.1899 0.2239 REMARK 3 12 2.5505 - 2.4776 0.84 2342 121 0.2020 0.2570 REMARK 3 13 2.4776 - 2.4124 0.84 2342 142 0.2050 0.2347 REMARK 3 14 2.4124 - 2.3535 0.84 2368 109 0.2252 0.2917 REMARK 3 15 2.3535 - 2.3000 0.85 2373 124 0.2468 0.3094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4488 REMARK 3 ANGLE : 1.009 6076 REMARK 3 CHIRALITY : 0.036 683 REMARK 3 PLANARITY : 0.005 770 REMARK 3 DIHEDRAL : 14.646 1647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9023 55.6489 23.8741 REMARK 3 T TENSOR REMARK 3 T11: 0.4084 T22: 0.2787 REMARK 3 T33: 0.2209 T12: -0.0479 REMARK 3 T13: 0.0097 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.3846 L22: 3.8555 REMARK 3 L33: 1.2665 L12: -0.0147 REMARK 3 L13: -0.1585 L23: 0.4139 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.2701 S13: -0.2770 REMARK 3 S21: 0.4332 S22: 0.0233 S23: 0.3948 REMARK 3 S31: 0.1146 S32: -0.1237 S33: -0.0523 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6454 63.9536 16.3995 REMARK 3 T TENSOR REMARK 3 T11: 0.2699 T22: 0.3514 REMARK 3 T33: 0.3536 T12: 0.0107 REMARK 3 T13: -0.0905 T23: -0.0869 REMARK 3 L TENSOR REMARK 3 L11: 6.9894 L22: 4.9079 REMARK 3 L33: 5.6152 L12: 0.1141 REMARK 3 L13: -3.7086 L23: 3.0166 REMARK 3 S TENSOR REMARK 3 S11: -0.0707 S12: -0.4280 S13: -0.1310 REMARK 3 S21: 0.0524 S22: 0.4090 S23: -0.9264 REMARK 3 S31: -0.0558 S32: 0.9447 S33: -0.2251 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7259 62.7243 7.0721 REMARK 3 T TENSOR REMARK 3 T11: 0.2401 T22: 0.2720 REMARK 3 T33: 0.1660 T12: -0.0451 REMARK 3 T13: 0.0181 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 3.6164 L22: 6.5189 REMARK 3 L33: 5.4696 L12: -1.2145 REMARK 3 L13: -0.7372 L23: 3.5092 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: 0.2939 S13: 0.1343 REMARK 3 S21: -0.2111 S22: 0.0524 S23: -0.3108 REMARK 3 S31: -0.1690 S32: 0.1661 S33: -0.0112 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0573 54.3931 13.5239 REMARK 3 T TENSOR REMARK 3 T11: 0.2132 T22: 0.2402 REMARK 3 T33: 0.1653 T12: -0.0382 REMARK 3 T13: 0.0213 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 4.2780 L22: 7.2374 REMARK 3 L33: 3.9711 L12: 0.0148 REMARK 3 L13: 0.5867 L23: -2.5882 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: 0.1043 S13: -0.4414 REMARK 3 S21: -0.4687 S22: 0.1018 S23: -0.2691 REMARK 3 S31: 0.2657 S32: 0.0482 S33: -0.0729 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1970 77.7438 21.8685 REMARK 3 T TENSOR REMARK 3 T11: 0.3469 T22: 0.3600 REMARK 3 T33: 0.7317 T12: 0.0399 REMARK 3 T13: 0.0231 T23: -0.1481 REMARK 3 L TENSOR REMARK 3 L11: 1.8398 L22: 3.5377 REMARK 3 L33: 0.8393 L12: 0.4406 REMARK 3 L13: 0.0178 L23: 0.4587 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.2079 S13: 0.5803 REMARK 3 S21: 0.0293 S22: -0.1552 S23: 1.4136 REMARK 3 S31: -0.1842 S32: -0.3498 S33: 0.0787 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 519 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1022 80.7483 16.6721 REMARK 3 T TENSOR REMARK 3 T11: 0.3038 T22: 0.2072 REMARK 3 T33: 0.3037 T12: 0.0272 REMARK 3 T13: -0.0347 T23: -0.0709 REMARK 3 L TENSOR REMARK 3 L11: 3.0812 L22: 5.0968 REMARK 3 L33: 3.3158 L12: -0.1204 REMARK 3 L13: -0.3211 L23: -0.6920 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: 0.2010 S13: 0.3569 REMARK 3 S21: -0.4288 S22: -0.1149 S23: 0.3443 REMARK 3 S31: -0.2459 S32: -0.1314 S33: 0.0306 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 520 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5615 63.8282 8.2854 REMARK 3 T TENSOR REMARK 3 T11: 0.4801 T22: 0.3790 REMARK 3 T33: 0.3621 T12: 0.0078 REMARK 3 T13: -0.1070 T23: -0.1328 REMARK 3 L TENSOR REMARK 3 L11: 7.9877 L22: 3.3000 REMARK 3 L33: 8.9017 L12: 2.2212 REMARK 3 L13: -0.1924 L23: -4.7993 REMARK 3 S TENSOR REMARK 3 S11: -0.2887 S12: 0.5005 S13: 0.5672 REMARK 3 S21: -0.7737 S22: -0.0224 S23: 0.5216 REMARK 3 S31: -0.3754 S32: -0.1396 S33: 0.2807 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42184 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08375 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58030 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5IM1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MOPSO, PH 7, 300 MM MG ACETATE, REMARK 280 13% PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.60500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.25500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.80250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.25500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.40750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.25500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.25500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.80250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.25500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.25500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.40750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 883 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 925 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 930 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 TYR A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 GLU A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 19 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 DPO A 605 O HOH A 701 2.15 REMARK 500 O HOH A 884 O HOH A 922 2.16 REMARK 500 O6 DPO A 605 O HOH A 702 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 14 -162.71 -74.69 REMARK 500 PRO A 16 171.38 -56.42 REMARK 500 LYS A 35 96.23 -66.49 REMARK 500 ASN A 98 75.97 50.28 REMARK 500 CYS A 101 20.64 -157.80 REMARK 500 ALA A 306 19.73 -141.69 REMARK 500 TYR A 307 -53.16 -155.25 REMARK 500 HIS A 529 76.78 -117.80 REMARK 500 LYS A 532 -72.13 -60.60 REMARK 500 VAL A 543 -61.87 -108.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD1 REMARK 620 2 DPO A 605 O2 95.3 REMARK 620 3 DPO A 605 O6 104.3 68.2 REMARK 620 4 HOH A 702 O 77.7 113.4 51.1 REMARK 620 5 HOH A 706 O 67.4 161.7 120.5 70.1 REMARK 620 6 HOH A 723 O 164.5 97.3 72.4 89.1 100.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD2 REMARK 620 2 ASP A 305 OD2 145.4 REMARK 620 3 DPO A 605 O2 90.4 92.3 REMARK 620 4 HOH A 789 O 113.0 82.7 145.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 444 OD1 REMARK 620 2 THR A 448 OG1 71.1 REMARK 620 3 GLU A 452 OE1 132.8 62.4 REMARK 620 4 DPO A 605 O5 89.6 160.5 137.1 REMARK 620 5 HOH A 701 O 82.1 89.8 104.9 84.0 REMARK 620 6 HOH A 732 O 65.2 62.2 85.4 113.4 141.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CRE A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IK0 RELATED DB: PDB REMARK 900 RELATED ID: 5IK9 RELATED DB: PDB REMARK 900 RELATED ID: 5IKA RELATED DB: PDB REMARK 900 RELATED ID: 5IKH RELATED DB: PDB REMARK 900 RELATED ID: 5IL3 RELATED DB: PDB REMARK 900 RELATED ID: 5IL8 RELATED DB: PDB REMARK 900 RELATED ID: 5ILD RELATED DB: PDB REMARK 900 RELATED ID: 5IDH RELATED DB: PDB REMARK 900 RELATED ID: 5IDI RELATED DB: PDB REMARK 900 RELATED ID: 5IDJ RELATED DB: PDB REMARK 900 RELATED ID: 5IDK RELATED DB: PDB REMARK 900 RELATED ID: 5IDY RELATED DB: PDB REMARK 900 RELATED ID: 5IDZ RELATED DB: PDB REMARK 900 RELATED ID: 5IM1 RELATED DB: PDB DBREF 5IK6 A 1 548 UNP Q40577 5EAS_TOBAC 1 548 SEQADV 5IK6 GLY A -1 UNP Q40577 EXPRESSION TAG SEQADV 5IK6 SER A 0 UNP Q40577 EXPRESSION TAG SEQRES 1 A 550 GLY SER MET ALA SER ALA ALA VAL ALA ASN TYR GLU GLU SEQRES 2 A 550 GLU ILE VAL ARG PRO VAL ALA ASP PHE SER PRO SER LEU SEQRES 3 A 550 TRP GLY ASP GLN PHE LEU SER PHE SER ILE LYS ASN GLN SEQRES 4 A 550 VAL ALA GLU LYS TYR ALA LYS GLU ILE GLU ALA LEU LYS SEQRES 5 A 550 GLU GLN THR ARG ASN MET LEU LEU ALA THR GLY MET LYS SEQRES 6 A 550 LEU ALA ASP THR LEU ASN LEU ILE ASP THR ILE GLU ARG SEQRES 7 A 550 LEU GLY ILE SER TYR HIS PHE GLU LYS GLU ILE ASP ASP SEQRES 8 A 550 ILE LEU ASP GLN ILE TYR ASN GLN ASN SER ASN CYS ASN SEQRES 9 A 550 ASP LEU CYS THR SER ALA LEU GLN PHE ARG LEU LEU ARG SEQRES 10 A 550 GLN HIS GLY PHE ASN ILE SER PRO GLU ILE PHE SER LYS SEQRES 11 A 550 PHE GLN ASP GLU ASN GLY LYS PHE LYS GLU SER LEU ALA SEQRES 12 A 550 SER ASP VAL LEU GLY LEU LEU ASN LEU TYR GLU ALA SER SEQRES 13 A 550 HIS VAL ARG THR HIS ALA ASP ASP ILE LEU GLU ASP ALA SEQRES 14 A 550 LEU ALA PHE SER THR ILE HIS LEU GLU SER ALA ALA PRO SEQRES 15 A 550 HIS LEU LYS SER PRO LEU ARG GLU GLN VAL THR HIS ALA SEQRES 16 A 550 LEU GLU GLN CYS LEU HIS LYS GLY VAL PRO ARG VAL GLU SEQRES 17 A 550 THR ARG PHE PHE ILE SER SER ILE TYR ASP LYS GLU GLN SEQRES 18 A 550 SER LYS ASN ASN VAL LEU LEU ARG PHE ALA LYS LEU ASP SEQRES 19 A 550 PHE ASN LEU LEU GLN MET LEU HIS LYS GLN GLU LEU ALA SEQRES 20 A 550 GLN VAL SER ARG TRP TRP LYS ASP LEU ASP PHE VAL THR SEQRES 21 A 550 THR LEU PRO TYR ALA ARG ASP ARG VAL VAL GLU CYS TYR SEQRES 22 A 550 PHE TRP ALA LEU GLY VAL TYR PHE GLU PRO GLN TYR SER SEQRES 23 A 550 GLN ALA ARG VAL MET LEU VAL LYS THR ILE SER MET ILE SEQRES 24 A 550 SER ILE VAL ASP ASP THR PHE ASP ALA TYR GLY THR VAL SEQRES 25 A 550 LYS GLU LEU GLU ALA TYR THR ASP ALA ILE GLN ARG TRP SEQRES 26 A 550 ASP ILE ASN GLU ILE ASP ARG LEU PRO ASP TYR MET LYS SEQRES 27 A 550 ILE SER TYR LYS ALA ILE LEU ASP LEU TYR LYS ASP TYR SEQRES 28 A 550 GLU LYS GLU LEU SER SER ALA GLY ARG SER HIS ILE VAL SEQRES 29 A 550 CYS HIS ALA ILE GLU ARG MET LYS GLU VAL VAL ARG ASN SEQRES 30 A 550 TYR ASN VAL GLU SER THR TRP PHE ILE GLU GLY TYR THR SEQRES 31 A 550 PRO PRO VAL SER GLU TYR LEU SER ASN ALA LEU ALA THR SEQRES 32 A 550 THR THR TYR TYR TYR LEU ALA THR THR SER TYR LEU GLY SEQRES 33 A 550 MET LYS SER ALA THR GLU GLN ASP PHE GLU TRP LEU SER SEQRES 34 A 550 LYS ASN PRO LYS ILE LEU GLU ALA SER VAL ILE ILE CYS SEQRES 35 A 550 ARG VAL ILE ASP ASP THR ALA THR TYR GLU VAL GLU LYS SEQRES 36 A 550 SER ARG GLY GLN ILE ALA THR GLY ILE GLU CYS CYS MET SEQRES 37 A 550 ARG ASP TYR GLY ILE SER THR LYS GLU ALA MET ALA LYS SEQRES 38 A 550 PHE GLN ASN MET ALA GLU THR ALA TRP LYS ASP ILE ASN SEQRES 39 A 550 GLU GLY LEU LEU ARG PRO THR PRO VAL SER THR GLU PHE SEQRES 40 A 550 LEU THR PRO ILE LEU ASN LEU ALA ARG ILE VAL GLU VAL SEQRES 41 A 550 THR TYR ILE HIS ASN LEU ASP GLY TYR THR HIS PRO GLU SEQRES 42 A 550 LYS VAL LEU LYS PRO HIS ILE ILE ASN LEU LEU VAL ASP SEQRES 43 A 550 SER ILE LYS ILE HET MG A 601 1 HET MG A 602 1 HET MG A 603 1 HET CRE A 604 15 HET DPO A 605 9 HETNAM MG MAGNESIUM ION HETNAM CRE GERMACRENE A HETNAM DPO DIPHOSPHATE HETSYN CRE 8-ISOPROPENYL-1,5-DIMETHYL-CYCLODECA-1,5-DIENE FORMUL 2 MG 3(MG 2+) FORMUL 5 CRE C15 H24 FORMUL 6 DPO O7 P2 4- FORMUL 7 HOH *235(H2 O) HELIX 1 AA1 LYS A 35 LEU A 58 1 24 HELIX 2 AA2 LYS A 63 LEU A 77 1 15 HELIX 3 AA3 ILE A 79 HIS A 82 5 4 HELIX 4 AA4 PHE A 83 ASN A 98 1 16 HELIX 5 AA5 ASP A 103 HIS A 117 1 15 HELIX 6 AA6 SER A 122 GLN A 130 5 9 HELIX 7 AA7 LYS A 137 SER A 142 5 6 HELIX 8 AA8 ASP A 143 SER A 154 1 12 HELIX 9 AA9 HIS A 155 ARG A 157 5 3 HELIX 10 AB1 ASP A 161 GLU A 165 5 5 HELIX 11 AB2 ASP A 166 ALA A 179 1 14 HELIX 12 AB3 PRO A 180 LEU A 182 5 3 HELIX 13 AB4 PRO A 185 GLN A 196 1 12 HELIX 14 AB5 VAL A 202 ILE A 214 1 13 HELIX 15 AB6 TYR A 215 GLU A 218 5 4 HELIX 16 AB7 ASN A 222 ASP A 253 1 32 HELIX 17 AB8 ASP A 255 LEU A 260 1 6 HELIX 18 AB9 ARG A 266 TYR A 278 1 13 HELIX 19 AC1 GLU A 280 GLN A 282 5 3 HELIX 20 AC2 TYR A 283 TYR A 307 1 25 HELIX 21 AC3 THR A 309 TRP A 323 1 15 HELIX 22 AC4 ASP A 324 LEU A 331 5 8 HELIX 23 AC5 PRO A 332 LEU A 353 1 22 HELIX 24 AC6 ARG A 358 HIS A 360 5 3 HELIX 25 AC7 ILE A 361 GLY A 386 1 26 HELIX 26 AC8 PRO A 390 LEU A 399 1 10 HELIX 27 AC9 ALA A 400 THR A 402 5 3 HELIX 28 AD1 THR A 403 TYR A 412 1 10 HELIX 29 AD2 THR A 419 LYS A 428 1 10 HELIX 30 AD3 PRO A 430 THR A 448 1 19 HELIX 31 AD4 THR A 448 ARG A 455 1 8 HELIX 32 AD5 THR A 460 GLY A 470 1 11 HELIX 33 AD6 SER A 472 LEU A 495 1 24 HELIX 34 AD7 SER A 502 TYR A 520 1 19 HELIX 35 AD8 ILE A 521 LEU A 524 5 4 HELIX 36 AD9 VAL A 533 VAL A 543 1 11 LINK OD1 ASP A 301 MG MG A 602 1555 1555 2.08 LINK OD2 ASP A 301 MG MG A 603 1555 1555 2.07 LINK OD2 ASP A 305 MG MG A 603 1555 1555 2.86 LINK OD1 ASP A 444 MG MG A 601 1555 1555 2.48 LINK OG1 THR A 448 MG MG A 601 1555 1555 2.95 LINK OE1 GLU A 452 MG MG A 601 1555 1555 2.07 LINK MG MG A 601 O5 DPO A 605 1555 1555 2.09 LINK MG MG A 601 O HOH A 701 1555 1555 2.93 LINK MG MG A 601 O HOH A 732 1555 1555 2.37 LINK MG MG A 602 O2 DPO A 605 1555 1555 2.10 LINK MG MG A 602 O6 DPO A 605 1555 1555 2.74 LINK MG MG A 602 O HOH A 702 1555 1555 2.08 LINK MG MG A 602 O HOH A 706 1555 1555 2.08 LINK MG MG A 602 O HOH A 723 1555 1555 2.08 LINK MG MG A 603 O2 DPO A 605 1555 1555 2.09 LINK MG MG A 603 O HOH A 789 1555 1555 2.07 CISPEP 1 SER A 184 PRO A 185 0 5.65 CISPEP 2 ARG A 497 PRO A 498 0 -5.72 SITE 1 AC1 6 ASP A 444 THR A 448 GLU A 452 DPO A 605 SITE 2 AC1 6 HOH A 701 HOH A 732 SITE 1 AC2 7 ASP A 301 ASP A 305 MG A 603 DPO A 605 SITE 2 AC2 7 HOH A 702 HOH A 706 HOH A 723 SITE 1 AC3 6 ASP A 301 ASP A 302 ASP A 305 MG A 602 SITE 2 AC3 6 DPO A 605 HOH A 789 SITE 1 AC4 10 ARG A 264 TRP A 273 ILE A 294 SER A 298 SITE 2 AC4 10 TYR A 376 CYS A 440 ASP A 444 TYR A 520 SITE 3 AC4 10 TYR A 527 DPO A 605 SITE 1 AC5 13 ARG A 264 ASP A 301 ASP A 305 THR A 401 SITE 2 AC5 13 ARG A 441 ASP A 444 MG A 601 MG A 602 SITE 3 AC5 13 MG A 603 CRE A 604 HOH A 701 HOH A 702 SITE 4 AC5 13 HOH A 723 CRYST1 126.510 126.510 123.210 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007905 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008116 0.00000