HEADER CHAPERONE/INHIBITOR 07-MAR-16 5IN9 TITLE CRYSTAL STRUCTURE OF GRP94 BOUND TO METHYL 3-CHLORO-2-(2-(1-((5- TITLE 2 CHLOROFURAN-2-YL)METHYL)-1H-IMIDAZOL-2-YL)ETHYL)-4,6- TITLE 3 DIHYDROXYBENZOATE, AN INHIBITOR BASED ON THE BNIM AND RADAMIDE TITLE 4 SCAFFOLDS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOPLASMIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 69-337; COMPND 5 SYNONYM: 94 KDA GLUCOSE-REGULATED PROTEIN,GRP-94,HEAT SHOCK PROTEIN COMPND 6 90 KDA BETA MEMBER 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 GENE: HSP90B1, GRP94, TRA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CATION-PI INTERACTION, BNIM AND RADAMIDE SCAFFOLD-BASED INHIBITOR, KEYWDS 2 ATP BINDING SITE, CHAPERONE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.L.LIEBERMAN,D.J.E.HUARD,J.L.KIZZIAH REVDAT 3 27-SEP-23 5IN9 1 REMARK REVDAT 2 20-JUL-16 5IN9 1 REMARK REVDAT 1 04-MAY-16 5IN9 0 JRNL AUTH V.M.CROWLEY,A.KHANDELWAL,S.MISHRA,A.R.STOTHERT,D.J.HUARD, JRNL AUTH 2 J.ZHAO,A.MUTH,A.S.DUERFELDT,J.L.KIZZIAH,R.L.LIEBERMAN, JRNL AUTH 3 C.A.DICKEY,B.S.BLAGG JRNL TITL DEVELOPMENT OF GLUCOSE REGULATED PROTEIN 94-SELECTIVE JRNL TITL 2 INHIBITORS BASED ON THE BNIM AND RADAMIDE SCAFFOLD. JRNL REF J.MED.CHEM. V. 59 3471 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27003516 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00085 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8764 - 7.3858 0.99 1258 127 0.1682 0.1941 REMARK 3 2 7.3858 - 5.8657 1.00 1285 134 0.2035 0.2642 REMARK 3 3 5.8657 - 5.1252 1.00 1248 145 0.2053 0.2684 REMARK 3 4 5.1252 - 4.6571 1.00 1243 139 0.1721 0.2276 REMARK 3 5 4.6571 - 4.3235 1.00 1238 146 0.1637 0.2000 REMARK 3 6 4.3235 - 4.0687 1.00 1283 154 0.1588 0.2289 REMARK 3 7 4.0687 - 3.8651 1.00 1258 118 0.1523 0.2206 REMARK 3 8 3.8651 - 3.6969 1.00 1263 150 0.1659 0.2305 REMARK 3 9 3.6969 - 3.5546 1.00 1244 142 0.1604 0.2612 REMARK 3 10 3.5546 - 3.4320 1.00 1268 146 0.1559 0.2321 REMARK 3 11 3.4320 - 3.3247 1.00 1263 131 0.1555 0.2644 REMARK 3 12 3.3247 - 3.2297 1.00 1263 154 0.1566 0.2436 REMARK 3 13 3.2297 - 3.1447 1.00 1238 116 0.1660 0.2570 REMARK 3 14 3.1447 - 3.0680 1.00 1245 150 0.1679 0.2758 REMARK 3 15 3.0680 - 2.9982 1.00 1286 136 0.1739 0.2782 REMARK 3 16 2.9982 - 2.9344 1.00 1289 146 0.1780 0.2865 REMARK 3 17 2.9344 - 2.8757 1.00 1231 144 0.1987 0.3307 REMARK 3 18 2.8757 - 2.8215 1.00 1273 139 0.1986 0.2709 REMARK 3 19 2.8215 - 2.7711 1.00 1282 128 0.2051 0.2796 REMARK 3 20 2.7711 - 2.7241 1.00 1265 126 0.2055 0.2899 REMARK 3 21 2.7241 - 2.6802 1.00 1257 139 0.2271 0.2757 REMARK 3 22 2.6802 - 2.6390 1.00 1242 144 0.2232 0.3284 REMARK 3 23 2.6390 - 2.6002 1.00 1297 156 0.2415 0.3181 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3649 REMARK 3 ANGLE : 1.295 4896 REMARK 3 CHIRALITY : 0.046 553 REMARK 3 PLANARITY : 0.005 603 REMARK 3 DIHEDRAL : 17.650 1340 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 49.9039-129.3409 118.9747 REMARK 3 T TENSOR REMARK 3 T11: 0.2677 T22: 0.2684 REMARK 3 T33: 0.3633 T12: 0.0096 REMARK 3 T13: 0.0086 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.2616 L22: 0.9263 REMARK 3 L33: 2.9892 L12: 0.0266 REMARK 3 L13: -0.0287 L23: -1.0944 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: -0.0770 S13: -0.0083 REMARK 3 S21: -0.0168 S22: 0.0724 S23: -0.0600 REMARK 3 S31: -0.0343 S32: -0.2047 S33: -0.0622 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16605 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 47.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GFD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN 35% PEG 400, REMARK 280 100 MM TRIS PH 7.5, 120 MM MAGNESIUM CHLORIDE. CRYSTALS WERE REMARK 280 HARVESTED AND SOAKED IN MOTHER LIQUOR CONTAINING 10 MM REMARK 280 INHIBITOR. GLYCEROL WAS ADDED AND CRYSTALS WERE SUBSEQUENTLY REMARK 280 CRYO-COOLED WITH LIQUID NITROGEN, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.82500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 68 REMARK 465 LEU A 69 REMARK 465 ARG A 70 REMARK 465 GLU A 71 REMARK 465 LYS A 72 REMARK 465 SER A 73 REMARK 465 GLN A 182 REMARK 465 GLU A 183 REMARK 465 ASP A 184 REMARK 465 GLY A 185 REMARK 465 GLN A 186 REMARK 465 THR A 323 REMARK 465 GLY A 324 REMARK 465 GLY A 325 REMARK 465 GLY A 326 REMARK 465 GLY A 327 REMARK 465 SER B 68 REMARK 465 LEU B 69 REMARK 465 ARG B 70 REMARK 465 GLU B 71 REMARK 465 LYS B 72 REMARK 465 SER B 73 REMARK 465 GLU B 183 REMARK 465 ASP B 184 REMARK 465 GLY B 185 REMARK 465 THR B 323 REMARK 465 GLY B 324 REMARK 465 GLY B 325 REMARK 465 GLY B 326 REMARK 465 GLY B 327 REMARK 465 LYS B 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 92 OG1 THR B 188 2.05 REMARK 500 OAC 6C0 B 406 O HOH B 501 2.15 REMARK 500 O ILE A 166 O HOH A 501 2.17 REMARK 500 O ASP B 262 ND2 ASN B 266 2.17 REMARK 500 N GLU A 123 O HOH A 502 2.18 REMARK 500 NZ LYS A 137 O3 GOL A 405 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 509 O HOH A 534 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 176 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 129 117.37 -162.96 REMARK 500 SER A 172 7.47 -52.62 REMARK 500 GLU A 173 72.05 173.84 REMARK 500 SER A 227 -1.44 83.17 REMARK 500 GLU A 229 179.77 175.22 REMARK 500 ASN B 96 52.62 -118.36 REMARK 500 GLU B 123 7.89 -69.23 REMARK 500 LEU B 126 47.88 -89.28 REMARK 500 ALA B 127 101.45 -57.32 REMARK 500 ASN B 129 79.38 -67.15 REMARK 500 ALA B 181 53.67 -64.32 REMARK 500 SER B 227 -5.20 80.88 REMARK 500 GLU B 229 -179.93 171.80 REMARK 500 ASP B 262 -67.70 -24.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 172 GLU A 173 129.97 REMARK 500 GLU A 173 PHE A 174 133.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 536 DISTANCE = 6.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6C0 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6C0 B 406 DBREF 5IN9 A 69 337 UNP P41148 ENPL_CANLF 69 337 DBREF 5IN9 B 69 337 UNP P41148 ENPL_CANLF 69 337 SEQADV 5IN9 SER A 68 UNP P41148 EXPRESSION TAG SEQADV 5IN9 A UNP P41148 GLU 287 DELETION SEQADV 5IN9 A UNP P41148 THR 288 DELETION SEQADV 5IN9 A UNP P41148 VAL 289 DELETION SEQADV 5IN9 A UNP P41148 GLU 290 DELETION SEQADV 5IN9 A UNP P41148 GLU 291 DELETION SEQADV 5IN9 A UNP P41148 PRO 292 DELETION SEQADV 5IN9 A UNP P41148 MET 293 DELETION SEQADV 5IN9 A UNP P41148 GLU 294 DELETION SEQADV 5IN9 A UNP P41148 GLU 295 DELETION SEQADV 5IN9 A UNP P41148 GLU 296 DELETION SEQADV 5IN9 A UNP P41148 GLU 297 DELETION SEQADV 5IN9 A UNP P41148 ALA 298 DELETION SEQADV 5IN9 A UNP P41148 ALA 299 DELETION SEQADV 5IN9 A UNP P41148 LYS 300 DELETION SEQADV 5IN9 A UNP P41148 GLU 301 DELETION SEQADV 5IN9 A UNP P41148 GLU 302 DELETION SEQADV 5IN9 A UNP P41148 LYS 303 DELETION SEQADV 5IN9 A UNP P41148 GLU 304 DELETION SEQADV 5IN9 A UNP P41148 ASP 305 DELETION SEQADV 5IN9 A UNP P41148 SER 306 DELETION SEQADV 5IN9 A UNP P41148 ASP 307 DELETION SEQADV 5IN9 A UNP P41148 ASP 308 DELETION SEQADV 5IN9 A UNP P41148 GLU 309 DELETION SEQADV 5IN9 A UNP P41148 ALA 310 DELETION SEQADV 5IN9 A UNP P41148 ALA 311 DELETION SEQADV 5IN9 A UNP P41148 VAL 312 DELETION SEQADV 5IN9 A UNP P41148 GLU 313 DELETION SEQADV 5IN9 A UNP P41148 GLU 314 DELETION SEQADV 5IN9 A UNP P41148 GLU 315 DELETION SEQADV 5IN9 A UNP P41148 GLU 316 DELETION SEQADV 5IN9 A UNP P41148 GLU 317 DELETION SEQADV 5IN9 A UNP P41148 GLU 318 DELETION SEQADV 5IN9 A UNP P41148 LYS 319 DELETION SEQADV 5IN9 A UNP P41148 LYS 320 DELETION SEQADV 5IN9 A UNP P41148 PRO 321 DELETION SEQADV 5IN9 A UNP P41148 LYS 322 DELETION SEQADV 5IN9 A UNP P41148 THR 323 DELETION SEQADV 5IN9 GLY A 324 UNP P41148 LYS 324 LINKER SEQADV 5IN9 GLY A 325 UNP P41148 LYS 325 LINKER SEQADV 5IN9 GLY A 326 UNP P41148 VAL 326 LINKER SEQADV 5IN9 GLY A 327 UNP P41148 GLU 327 LINKER SEQADV 5IN9 SER B 68 UNP P41148 EXPRESSION TAG SEQADV 5IN9 B UNP P41148 GLU 287 DELETION SEQADV 5IN9 B UNP P41148 THR 288 DELETION SEQADV 5IN9 B UNP P41148 VAL 289 DELETION SEQADV 5IN9 B UNP P41148 GLU 290 DELETION SEQADV 5IN9 B UNP P41148 GLU 291 DELETION SEQADV 5IN9 B UNP P41148 PRO 292 DELETION SEQADV 5IN9 B UNP P41148 MET 293 DELETION SEQADV 5IN9 B UNP P41148 GLU 294 DELETION SEQADV 5IN9 B UNP P41148 GLU 295 DELETION SEQADV 5IN9 B UNP P41148 GLU 296 DELETION SEQADV 5IN9 B UNP P41148 GLU 297 DELETION SEQADV 5IN9 B UNP P41148 ALA 298 DELETION SEQADV 5IN9 B UNP P41148 ALA 299 DELETION SEQADV 5IN9 B UNP P41148 LYS 300 DELETION SEQADV 5IN9 B UNP P41148 GLU 301 DELETION SEQADV 5IN9 B UNP P41148 GLU 302 DELETION SEQADV 5IN9 B UNP P41148 LYS 303 DELETION SEQADV 5IN9 B UNP P41148 GLU 304 DELETION SEQADV 5IN9 B UNP P41148 ASP 305 DELETION SEQADV 5IN9 B UNP P41148 SER 306 DELETION SEQADV 5IN9 B UNP P41148 ASP 307 DELETION SEQADV 5IN9 B UNP P41148 ASP 308 DELETION SEQADV 5IN9 B UNP P41148 GLU 309 DELETION SEQADV 5IN9 B UNP P41148 ALA 310 DELETION SEQADV 5IN9 B UNP P41148 ALA 311 DELETION SEQADV 5IN9 B UNP P41148 VAL 312 DELETION SEQADV 5IN9 B UNP P41148 GLU 313 DELETION SEQADV 5IN9 B UNP P41148 GLU 314 DELETION SEQADV 5IN9 B UNP P41148 GLU 315 DELETION SEQADV 5IN9 B UNP P41148 GLU 316 DELETION SEQADV 5IN9 B UNP P41148 GLU 317 DELETION SEQADV 5IN9 B UNP P41148 GLU 318 DELETION SEQADV 5IN9 B UNP P41148 LYS 319 DELETION SEQADV 5IN9 B UNP P41148 LYS 320 DELETION SEQADV 5IN9 B UNP P41148 PRO 321 DELETION SEQADV 5IN9 B UNP P41148 LYS 322 DELETION SEQADV 5IN9 B UNP P41148 THR 323 DELETION SEQADV 5IN9 GLY B 324 UNP P41148 LYS 324 LINKER SEQADV 5IN9 GLY B 325 UNP P41148 LYS 325 LINKER SEQADV 5IN9 GLY B 326 UNP P41148 VAL 326 LINKER SEQADV 5IN9 GLY B 327 UNP P41148 GLU 327 LINKER SEQRES 1 A 233 SER LEU ARG GLU LYS SER GLU LYS PHE ALA PHE GLN ALA SEQRES 2 A 233 GLU VAL ASN ARG MET MET LYS LEU ILE ILE ASN SER LEU SEQRES 3 A 233 TYR LYS ASN LYS GLU ILE PHE LEU ARG GLU LEU ILE SER SEQRES 4 A 233 ASN ALA SER ASP ALA LEU ASP LYS ILE ARG LEU ILE SER SEQRES 5 A 233 LEU THR ASP GLU ASN ALA LEU ALA GLY ASN GLU GLU LEU SEQRES 6 A 233 THR VAL LYS ILE LYS CYS ASP LYS GLU LYS ASN LEU LEU SEQRES 7 A 233 HIS VAL THR ASP THR GLY VAL GLY MET THR ARG GLU GLU SEQRES 8 A 233 LEU VAL LYS ASN LEU GLY THR ILE ALA LYS SER GLY THR SEQRES 9 A 233 SER GLU PHE LEU ASN LYS MET THR GLU ALA GLN GLU ASP SEQRES 10 A 233 GLY GLN SER THR SER GLU LEU ILE GLY GLN PHE GLY VAL SEQRES 11 A 233 GLY PHE TYR SER ALA PHE LEU VAL ALA ASP LYS VAL ILE SEQRES 12 A 233 VAL THR SER LYS HIS ASN ASN ASP THR GLN HIS ILE TRP SEQRES 13 A 233 GLU SER ASP SER ASN GLU PHE SER VAL ILE ALA ASP PRO SEQRES 14 A 233 ARG GLY ASN THR LEU GLY ARG GLY THR THR ILE THR LEU SEQRES 15 A 233 VAL LEU LYS GLU GLU ALA SER ASP TYR LEU GLU LEU ASP SEQRES 16 A 233 THR ILE LYS ASN LEU VAL LYS LYS TYR SER GLN PHE ILE SEQRES 17 A 233 ASN PHE PRO ILE TYR VAL TRP SER SER LYS THR GLY GLY SEQRES 18 A 233 GLY GLY LYS THR VAL TRP ASP TRP GLU LEU MET ASN SEQRES 1 B 233 SER LEU ARG GLU LYS SER GLU LYS PHE ALA PHE GLN ALA SEQRES 2 B 233 GLU VAL ASN ARG MET MET LYS LEU ILE ILE ASN SER LEU SEQRES 3 B 233 TYR LYS ASN LYS GLU ILE PHE LEU ARG GLU LEU ILE SER SEQRES 4 B 233 ASN ALA SER ASP ALA LEU ASP LYS ILE ARG LEU ILE SER SEQRES 5 B 233 LEU THR ASP GLU ASN ALA LEU ALA GLY ASN GLU GLU LEU SEQRES 6 B 233 THR VAL LYS ILE LYS CYS ASP LYS GLU LYS ASN LEU LEU SEQRES 7 B 233 HIS VAL THR ASP THR GLY VAL GLY MET THR ARG GLU GLU SEQRES 8 B 233 LEU VAL LYS ASN LEU GLY THR ILE ALA LYS SER GLY THR SEQRES 9 B 233 SER GLU PHE LEU ASN LYS MET THR GLU ALA GLN GLU ASP SEQRES 10 B 233 GLY GLN SER THR SER GLU LEU ILE GLY GLN PHE GLY VAL SEQRES 11 B 233 GLY PHE TYR SER ALA PHE LEU VAL ALA ASP LYS VAL ILE SEQRES 12 B 233 VAL THR SER LYS HIS ASN ASN ASP THR GLN HIS ILE TRP SEQRES 13 B 233 GLU SER ASP SER ASN GLU PHE SER VAL ILE ALA ASP PRO SEQRES 14 B 233 ARG GLY ASN THR LEU GLY ARG GLY THR THR ILE THR LEU SEQRES 15 B 233 VAL LEU LYS GLU GLU ALA SER ASP TYR LEU GLU LEU ASP SEQRES 16 B 233 THR ILE LYS ASN LEU VAL LYS LYS TYR SER GLN PHE ILE SEQRES 17 B 233 ASN PHE PRO ILE TYR VAL TRP SER SER LYS THR GLY GLY SEQRES 18 B 233 GLY GLY LYS THR VAL TRP ASP TRP GLU LEU MET ASN HET PGE A 401 10 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET 6C0 A 410 27 HET GOL B 401 6 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET 6C0 B 406 27 HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM 6C0 METHYL 3-CHLORO-2-(2-{1-[(5-CHLOROFURAN-2-YL)METHYL]- HETNAM 2 6C0 1H-IMIDAZOL-2-YL}ETHYL)-4,6-DIHYDROXYBENZOATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PGE C6 H14 O4 FORMUL 4 GOL 13(C3 H8 O3) FORMUL 12 6C0 2(C18 H16 CL2 N2 O5) FORMUL 19 HOH *63(H2 O) HELIX 1 AA1 GLN A 79 TYR A 94 1 16 HELIX 2 AA2 LYS A 95 LYS A 97 5 3 HELIX 3 AA3 GLU A 98 ASP A 122 1 25 HELIX 4 AA4 THR A 155 LEU A 163 1 9 HELIX 5 AA5 GLY A 170 SER A 172 5 3 HELIX 6 AA6 GLU A 173 GLU A 180 1 8 HELIX 7 AA7 THR A 188 GLY A 196 1 9 HELIX 8 AA8 VAL A 197 LEU A 204 5 8 HELIX 9 AA9 GLU A 253 LEU A 259 5 7 HELIX 10 AB1 GLU A 260 GLN A 273 1 14 HELIX 11 AB2 GLN B 79 LEU B 93 1 15 HELIX 12 AB3 GLU B 98 ASP B 122 1 25 HELIX 13 AB4 THR B 155 GLY B 164 1 10 HELIX 14 AB5 GLY B 170 ALA B 181 1 12 HELIX 15 AB6 SER B 187 PHE B 195 1 9 HELIX 16 AB7 VAL B 197 LEU B 204 5 8 HELIX 17 AB8 GLU B 253 LEU B 259 5 7 HELIX 18 AB9 GLU B 260 GLN B 273 1 14 SHEET 1 AA1 9 LYS A 75 PHE A 76 0 SHEET 2 AA1 9 PHE A 230 ALA A 234 -1 O PHE A 230 N PHE A 76 SHEET 3 AA1 9 HIS A 221 SER A 225 -1 N ILE A 222 O ILE A 233 SHEET 4 AA1 9 ALA A 206 LYS A 214 -1 N VAL A 211 O TRP A 223 SHEET 5 AA1 9 GLY A 244 LEU A 251 -1 O GLY A 244 N LYS A 214 SHEET 6 AA1 9 LEU A 144 ASP A 149 -1 N LEU A 145 O LEU A 249 SHEET 7 AA1 9 VAL A 134 ASP A 139 -1 N LYS A 137 O HIS A 146 SHEET 8 AA1 9 ILE A 279 LYS A 285 1 O TYR A 280 N ILE A 136 SHEET 9 AA1 9 VAL A 330 LEU A 335 -1 O GLU A 334 N VAL A 281 SHEET 1 AA2 9 LYS B 75 PHE B 76 0 SHEET 2 AA2 9 PHE B 230 ALA B 234 -1 O PHE B 230 N PHE B 76 SHEET 3 AA2 9 HIS B 221 SER B 225 -1 N ILE B 222 O ILE B 233 SHEET 4 AA2 9 ALA B 206 LYS B 214 -1 N VAL B 211 O TRP B 223 SHEET 5 AA2 9 GLY B 244 LEU B 251 -1 O THR B 248 N ILE B 210 SHEET 6 AA2 9 LEU B 144 ASP B 149 -1 N VAL B 147 O ILE B 247 SHEET 7 AA2 9 VAL B 134 ASP B 139 -1 N ASP B 139 O LEU B 144 SHEET 8 AA2 9 ILE B 279 SER B 284 1 O TRP B 282 N ILE B 136 SHEET 9 AA2 9 TRP B 331 LEU B 335 -1 O ASP B 332 N SER B 283 CISPEP 1 GLU A 180 ALA A 181 0 -2.46 SITE 1 AC1 5 ASN A 83 LYS A 87 SER A 227 LYS B 87 SITE 2 AC1 5 SER B 227 SITE 1 AC2 6 LYS A 75 GLU A 224 SER A 225 ASP A 226 SITE 2 AC2 6 GLU A 229 ARG B 84 SITE 1 AC3 3 ASP A 110 ASP A 113 LYS A 114 SITE 1 AC4 4 GLU A 131 LEU A 132 THR A 133 PRO A 278 SITE 1 AC5 3 LYS A 137 TRP A 282 TRP A 333 SITE 1 AC6 4 THR A 212 ARG A 237 THR A 248 HOH A 504 SITE 1 AC7 3 LYS A 137 HIS A 146 THR A 148 SITE 1 AC8 6 ALA A 77 ASN A 228 GLU A 229 PHE B 78 SITE 2 AC8 6 GLN B 79 ALA B 80 SITE 1 AC9 5 ILE A 275 ASN A 276 PHE A 277 PRO A 278 SITE 2 AC9 5 ASN A 337 SITE 1 AD1 14 LEU A 104 ASN A 107 ALA A 111 ASP A 149 SITE 2 AD1 14 MET A 154 ASN A 162 ILE A 166 LYS A 168 SITE 3 AD1 14 GLY A 196 PHE A 199 THR A 245 ILE A 247 SITE 4 AD1 14 HOH A 503 HOH A 505 SITE 1 AD2 7 ARG A 84 LYS B 75 LYS B 208 GLU B 224 SITE 2 AD2 7 ASP B 226 GLU B 229 SER B 231 SITE 1 AD3 3 ASP B 110 ASP B 113 LYS B 114 SITE 1 AD4 1 GOL B 404 SITE 1 AD5 1 GOL B 403 SITE 1 AD6 6 ASP B 122 ALA B 125 HIS B 215 ASN B 216 SITE 2 AD6 6 ASN B 217 HOH B 506 SITE 1 AD7 19 ASN B 107 ALA B 111 LYS B 114 ASP B 149 SITE 2 AD7 19 VAL B 152 GLY B 153 MET B 154 ASN B 162 SITE 3 AD7 19 LEU B 163 LYS B 168 GLY B 196 VAL B 197 SITE 4 AD7 19 PHE B 199 TYR B 200 THR B 245 ILE B 247 SITE 5 AD7 19 HOH B 501 HOH B 502 HOH B 509 CRYST1 43.020 65.650 95.860 90.00 92.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023245 0.000000 0.001181 0.00000 SCALE2 0.000000 0.015232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010445 0.00000