HEADER HYDROLASE 08-MAR-16 5IO3 TITLE CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ TITLE 2 - I422 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN RAVZ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. SOURCE 3 PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1; SOURCE 6 GENE: LPG1683; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AUTOPHAGY, ATG8, DECONJUGATING ENZYME, PROTEASE, ATG4B, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.KWON,L.KIM,B.-W.KIM,S.B.HONG,H.K.SONG REVDAT 3 20-MAR-24 5IO3 1 REMARK REVDAT 2 17-MAY-17 5IO3 1 JRNL REVDAT 1 09-NOV-16 5IO3 0 JRNL AUTH D.H.KWON,S.KIM,Y.O.JUNG,K.H.ROH,L.KIM,B.-W.KIM,S.B.HONG, JRNL AUTH 2 I.Y.LEE,J.H.SONG,W.C.LEE,E.J.CHOI,K.Y.HWANG,H.K.SONG JRNL TITL THE 1:2 COMPLEX BETWEEN RAVZ AND LC3 REVEALS A MECHANISM FOR JRNL TITL 2 DECONJUGATION OF LC3 ON THE PHAGOPHORE MEMBRANE JRNL REF AUTOPHAGY V. 13 70 2017 JRNL REFN ESSN 1554-8635 JRNL PMID 27791457 JRNL DOI 10.1080/15548627.2016.1243199 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 23216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.610 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9775 - 6.5973 1.00 1672 158 0.1719 0.2200 REMARK 3 2 6.5973 - 5.2394 1.00 1580 149 0.2272 0.2904 REMARK 3 3 5.2394 - 4.5780 1.00 1568 148 0.1557 0.2319 REMARK 3 4 4.5780 - 4.1598 1.00 1551 146 0.1662 0.2546 REMARK 3 5 4.1598 - 3.8618 0.99 1535 144 0.1798 0.2717 REMARK 3 6 3.8618 - 3.6343 0.99 1529 145 0.2069 0.2633 REMARK 3 7 3.6343 - 3.4524 0.99 1525 144 0.2351 0.3135 REMARK 3 8 3.4524 - 3.3021 0.99 1522 143 0.2799 0.3718 REMARK 3 9 3.3021 - 3.1751 0.99 1516 143 0.3074 0.3660 REMARK 3 10 3.1751 - 3.0655 0.99 1507 142 0.2998 0.3314 REMARK 3 11 3.0655 - 2.9697 0.98 1478 138 0.3340 0.3996 REMARK 3 12 2.9697 - 2.8848 0.96 1485 141 0.3467 0.4042 REMARK 3 13 2.8848 - 2.8089 0.95 1442 136 0.3722 0.3881 REMARK 3 14 2.8089 - 2.7404 0.86 1307 123 0.3574 0.4306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.610 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3095 REMARK 3 ANGLE : 1.340 4181 REMARK 3 CHIRALITY : 0.064 474 REMARK 3 PLANARITY : 0.008 532 REMARK 3 DIHEDRAL : 19.353 1876 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.3837 -34.1736 2.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.3686 T22: 0.1794 REMARK 3 T33: 0.2030 T12: 0.0455 REMARK 3 T13: -0.0875 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.8876 L22: 0.6952 REMARK 3 L33: 1.1748 L12: 0.3267 REMARK 3 L13: -0.3313 L23: 0.6139 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: 0.1649 S13: 0.1751 REMARK 3 S21: 0.0262 S22: 0.1279 S23: 0.0416 REMARK 3 S31: -0.2846 S32: -0.0352 S33: -0.0237 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.1002 -41.4400 -7.0306 REMARK 3 T TENSOR REMARK 3 T11: 0.4878 T22: 0.4249 REMARK 3 T33: 0.3738 T12: -0.1787 REMARK 3 T13: -0.0880 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 0.6723 L22: 0.1900 REMARK 3 L33: 0.3985 L12: -0.1419 REMARK 3 L13: -0.4571 L23: -0.0091 REMARK 3 S TENSOR REMARK 3 S11: 0.1271 S12: 0.0811 S13: -0.2075 REMARK 3 S21: -0.1622 S22: 0.1011 S23: -0.0589 REMARK 3 S31: -0.2204 S32: 0.3344 S33: 0.0038 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.4416 -24.0121 11.7144 REMARK 3 T TENSOR REMARK 3 T11: 0.5667 T22: 0.1476 REMARK 3 T33: 0.4313 T12: -0.1079 REMARK 3 T13: -0.0272 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 0.3423 L22: 0.4729 REMARK 3 L33: 0.3720 L12: 0.0182 REMARK 3 L13: -0.0752 L23: -0.4136 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: 0.0198 S13: 0.2506 REMARK 3 S21: 0.1408 S22: 0.0317 S23: 0.1803 REMARK 3 S31: -0.2668 S32: 0.0618 S33: -0.1573 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 359 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9407 -10.9047 34.7923 REMARK 3 T TENSOR REMARK 3 T11: 0.6353 T22: 0.2345 REMARK 3 T33: 0.5101 T12: -0.2100 REMARK 3 T13: 0.0306 T23: -0.1408 REMARK 3 L TENSOR REMARK 3 L11: 0.5331 L22: 0.3431 REMARK 3 L33: 0.0722 L12: 0.0517 REMARK 3 L13: 0.1636 L23: -0.0693 REMARK 3 S TENSOR REMARK 3 S11: -0.0876 S12: -0.0233 S13: 0.2205 REMARK 3 S21: 0.1644 S22: 0.0646 S23: -0.1358 REMARK 3 S31: -0.1522 S32: 0.0567 S33: 0.0330 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23220 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 39.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M NACL, 28% PEG 3350, 0.1M REMARK 280 IMIDAZOLE PH6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 111.02050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 111.02050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 35.64900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 111.02050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 111.02050 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 35.64900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 111.02050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 111.02050 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 35.64900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 111.02050 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 111.02050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 35.64900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 111.02050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 111.02050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 35.64900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 111.02050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 111.02050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 35.64900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 111.02050 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 111.02050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 35.64900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 111.02050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 111.02050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 35.64900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 632 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 GLY A 7 REMARK 465 LYS A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 10 REMARK 465 LEU A 11 REMARK 465 ILE A 12 REMARK 465 VAL A 13 REMARK 465 ASP A 14 REMARK 465 GLU A 15 REMARK 465 PHE A 16 REMARK 465 GLU A 17 REMARK 465 GLU A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 GLN A 22 REMARK 465 GLU A 23 REMARK 465 SER A 24 REMARK 465 ASP A 25 REMARK 465 ILE A 26 REMARK 465 ASP A 27 REMARK 465 GLU A 28 REMARK 465 PHE A 29 REMARK 465 ASP A 30 REMARK 465 LEU A 31 REMARK 465 LEU A 32 REMARK 465 GLU A 33 REMARK 465 GLY A 34 REMARK 465 ASP A 35 REMARK 465 GLU A 36 REMARK 465 LYS A 37 REMARK 465 LEU A 38 REMARK 465 PRO A 39 REMARK 465 GLY A 40 REMARK 465 ASP A 41 REMARK 465 SER A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 ASP A 45 REMARK 465 LYS A 46 REMARK 465 THR A 47 REMARK 465 THR A 48 REMARK 465 ASP A 434 REMARK 465 PHE A 435 REMARK 465 VAL A 436 REMARK 465 THR A 437 REMARK 465 ILE A 438 REMARK 465 GLU A 439 REMARK 465 LYS A 440 REMARK 465 ASP A 441 REMARK 465 GLU A 442 REMARK 465 LEU A 443 REMARK 465 PHE A 444 REMARK 465 ASP A 445 REMARK 465 VAL A 446 REMARK 465 PRO A 447 REMARK 465 ASP A 448 REMARK 465 ILE A 449 REMARK 465 THR A 450 REMARK 465 GLY A 451 REMARK 465 GLU A 452 REMARK 465 GLU A 453 REMARK 465 LEU A 454 REMARK 465 ALA A 455 REMARK 465 SER A 456 REMARK 465 LYS A 457 REMARK 465 LYS A 458 REMARK 465 GLY A 459 REMARK 465 ILE A 460 REMARK 465 GLU A 461 REMARK 465 GLN A 462 REMARK 465 GLY A 463 REMARK 465 ALA A 464 REMARK 465 LEU A 465 REMARK 465 ASP A 466 REMARK 465 LYS A 467 REMARK 465 GLU A 468 REMARK 465 ALA A 469 REMARK 465 LEU A 470 REMARK 465 LEU A 471 REMARK 465 LYS A 472 REMARK 465 GLN A 473 REMARK 465 LYS A 474 REMARK 465 GLN A 475 REMARK 465 ILE A 476 REMARK 465 LYS A 477 REMARK 465 THR A 478 REMARK 465 ASP A 479 REMARK 465 LEU A 480 REMARK 465 LEU A 481 REMARK 465 ASP A 482 REMARK 465 LEU A 483 REMARK 465 ARG A 484 REMARK 465 GLU A 485 REMARK 465 GLU A 486 REMARK 465 ASP A 487 REMARK 465 LYS A 488 REMARK 465 THR A 489 REMARK 465 GLY A 490 REMARK 465 LEU A 491 REMARK 465 LYS A 492 REMARK 465 LYS A 493 REMARK 465 PRO A 494 REMARK 465 LEU A 495 REMARK 465 HIS A 496 REMARK 465 GLY A 497 REMARK 465 GLY A 498 REMARK 465 ILE A 499 REMARK 465 LYS A 500 REMARK 465 VAL A 501 REMARK 465 LYS A 502 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 107 O HOH A 601 1.99 REMARK 500 OG SER A 273 O HOH A 602 2.01 REMARK 500 N LYS A 420 O HOH A 603 2.11 REMARK 500 OD2 ASP A 429 O HOH A 604 2.13 REMARK 500 O HOH A 609 O HOH A 622 2.17 REMARK 500 O THR A 203 OG SER A 207 2.18 REMARK 500 OE1 GLN A 103 O HOH A 605 2.18 REMARK 500 NH2 ARG A 308 OE1 GLU A 331 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 206 NH2 ARG A 343 15545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 217 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 119 -12.68 99.06 REMARK 500 VAL A 174 71.10 48.33 REMARK 500 HIS A 249 -115.65 47.73 REMARK 500 LEU A 253 -70.51 -44.52 REMARK 500 ILE A 287 -83.43 -107.50 REMARK 500 SER A 400 -137.04 43.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 118 ASP A 119 -97.65 REMARK 500 LEU A 253 THR A 254 146.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HZY RELATED DB: PDB DBREF 5IO3 A 1 502 UNP Q5ZUV9 Q5ZUV9_LEGPH 1 502 SEQADV 5IO3 SER A 258 UNP Q5ZUV9 CYS 258 ENGINEERED MUTATION SEQRES 1 A 502 MET LYS GLY LYS LEU THR GLY LYS ASP LYS LEU ILE VAL SEQRES 2 A 502 ASP GLU PHE GLU GLU LEU GLY GLU GLN GLU SER ASP ILE SEQRES 3 A 502 ASP GLU PHE ASP LEU LEU GLU GLY ASP GLU LYS LEU PRO SEQRES 4 A 502 GLY ASP SER GLU LEU ASP LYS THR THR SER ILE TYR PRO SEQRES 5 A 502 PRO GLU THR SER TRP GLU VAL ASN LYS GLY MET ASN SER SEQRES 6 A 502 SER ARG LEU HIS LYS LEU TYR SER LEU PHE PHE ASP LYS SEQRES 7 A 502 SER SER ALA PHE TYR LEU GLY ASP ASP VAL SER VAL LEU SEQRES 8 A 502 GLU ASP LYS PRO LEU THR GLY ALA TYR GLY PHE GLN SER SEQRES 9 A 502 LYS LYS ASN ASP GLN GLN ILE PHE LEU PHE ARG PRO ASP SEQRES 10 A 502 SER ASP TYR VAL ALA GLY TYR HIS VAL ASP ALA LYS SER SEQRES 11 A 502 ASP ALA GLY TRP VAL ASN ASP LYS LEU ASP ARG ARG LEU SEQRES 12 A 502 SER GLU ILE SER GLU PHE CYS SER LYS ALA THR GLN PRO SEQRES 13 A 502 ALA THR PHE ILE LEU PRO PHE VAL GLU MET PRO THR ASP SEQRES 14 A 502 ILE THR LYS GLY VAL GLN HIS GLN VAL LEU LEU THR ILE SEQRES 15 A 502 SER TYR ASP PRO LYS SER LYS GLN LEU THR PRO THR VAL SEQRES 16 A 502 TYR ASP SER ILE GLY ARG ASP THR TYR SER GLU SER LEU SEQRES 17 A 502 SER SER TYR PHE LYS GLY LYS TYR ARG THR THR CYS ASP SEQRES 18 A 502 GLU ILE LEU THR GLN SER ILE GLU LYS ALA ILE LYS SER SEQRES 19 A 502 THR ASP PHE THR LEU GLY LYS PHE THR ARG ALA ALA TYR SEQRES 20 A 502 ASN HIS GLN ASN ARG LEU THR GLU GLY ASN SER GLY SER SEQRES 21 A 502 TYR THR PHE ARG THR ILE LYS GLU VAL ILE SER SER SER SEQRES 22 A 502 ALA GLN GLY THR GLU VAL LYS ILE PRO GLY SER GLY TYR SEQRES 23 A 502 ILE THR SER ASN SER TYR LEU THR SER GLN HIS VAL GLN SEQRES 24 A 502 ASP ILE GLU SER CYS ILE LYS TYR ARG ASN LEU GLY VAL SEQRES 25 A 502 VAL ASP ILE GLU SER ALA LEU THR GLU GLY LYS THR LEU SEQRES 26 A 502 PRO VAL GLN LEU SER GLU PHE ILE VAL ALA LEU GLU ASP SEQRES 27 A 502 TYR GLY LYS LEU ARG SER GLN GLN SER GLU LYS SER MET SEQRES 28 A 502 LEU ASN PHE ILE GLY TYR SER LYS THR ALA LYS LEU THR SEQRES 29 A 502 ALA VAL GLU LEU LEU ILE GLY ILE LEU ASN ASP ILE LYS SEQRES 30 A 502 GLY LYS ASN GLU ILE SER GLU SER GLN TYR ASP LYS LEU SEQRES 31 A 502 VAL LYS GLU VAL ASP CYS LEU MET ASP SER SER LEU GLY SEQRES 32 A 502 LYS LEU VAL GLN PHE HIS LEU LYS ASN LEU GLY ALA GLU SEQRES 33 A 502 SER LEU GLN LYS LEU VAL LEU PRO CYS VAL LYS PHE ASP SEQRES 34 A 502 ASP THR ILE ASP ASP PHE VAL THR ILE GLU LYS ASP GLU SEQRES 35 A 502 LEU PHE ASP VAL PRO ASP ILE THR GLY GLU GLU LEU ALA SEQRES 36 A 502 SER LYS LYS GLY ILE GLU GLN GLY ALA LEU ASP LYS GLU SEQRES 37 A 502 ALA LEU LEU LYS GLN LYS GLN ILE LYS THR ASP LEU LEU SEQRES 38 A 502 ASP LEU ARG GLU GLU ASP LYS THR GLY LEU LYS LYS PRO SEQRES 39 A 502 LEU HIS GLY GLY ILE LYS VAL LYS FORMUL 2 HOH *33(H2 O) HELIX 1 AA1 GLU A 58 GLY A 62 5 5 HELIX 2 AA2 ASN A 64 TYR A 72 1 9 HELIX 3 AA3 SER A 73 PHE A 76 5 4 HELIX 4 AA4 ASN A 136 CYS A 150 1 15 HELIX 5 AA5 SER A 151 ALA A 153 5 3 HELIX 6 AA6 CYS A 220 ILE A 232 1 13 HELIX 7 AA7 GLY A 256 GLY A 276 1 21 HELIX 8 AA8 THR A 288 LEU A 293 1 6 HELIX 9 AA9 THR A 294 TYR A 307 1 14 HELIX 10 AB1 VAL A 312 GLU A 321 1 10 HELIX 11 AB2 GLN A 328 GLN A 345 1 18 HELIX 12 AB3 SER A 358 GLY A 378 1 21 HELIX 13 AB4 GLU A 384 MET A 398 1 15 HELIX 14 AB5 ASP A 399 LEU A 413 1 15 HELIX 15 AB6 SER A 417 LEU A 423 1 7 SHEET 1 AA1 2 ILE A 50 TYR A 51 0 SHEET 2 AA1 2 LEU A 310 GLY A 311 -1 O LEU A 310 N TYR A 51 SHEET 1 AA2 7 VAL A 88 VAL A 90 0 SHEET 2 AA2 7 ALA A 99 SER A 104 -1 O GLN A 103 N SER A 89 SHEET 3 AA2 7 GLN A 110 PHE A 114 -1 O LEU A 113 N TYR A 100 SHEET 4 AA2 7 ALA A 157 PRO A 167 1 O ILE A 160 N PHE A 114 SHEET 5 AA2 7 HIS A 176 ASP A 185 -1 O VAL A 178 N PHE A 163 SHEET 6 AA2 7 GLN A 190 ASP A 197 -1 O THR A 194 N THR A 181 SHEET 7 AA2 7 THR A 238 LEU A 239 1 O THR A 238 N LEU A 191 SHEET 1 AA3 6 GLY A 133 VAL A 135 0 SHEET 2 AA3 6 VAL A 121 TYR A 124 -1 N GLY A 123 O TRP A 134 SHEET 3 AA3 6 ALA A 157 PRO A 167 1 O MET A 166 N TYR A 124 SHEET 4 AA3 6 HIS A 176 ASP A 185 -1 O VAL A 178 N PHE A 163 SHEET 5 AA3 6 GLN A 190 ASP A 197 -1 O THR A 194 N THR A 181 SHEET 6 AA3 6 THR A 243 ALA A 246 1 O ALA A 245 N ASP A 197 SHEET 1 AA4 2 ILE A 382 SER A 383 0 SHEET 2 AA4 2 VAL A 426 LYS A 427 1 O LYS A 427 N ILE A 382 CISPEP 1 ASP A 429 ASP A 430 0 -20.50 CISPEP 2 THR A 431 ILE A 432 0 3.73 CISPEP 3 ILE A 432 ASP A 433 0 -10.83 CRYST1 222.041 222.041 71.298 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004504 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014026 0.00000