HEADER TRANSFERASE 08-MAR-16 5IOS TITLE FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE R90A VARIANT IN COMPLEX WITH FAD TITLE 2 AND DEOXYURIDINE MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE THYX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TSASE; COMPND 5 EC: 2.1.1.148; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: THYX, THY1, TM_0449; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FAD-DEPENDENT, NUCLEOTIDE BIOSYNTHESIS, REDUCTIVE METHYLATION, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.BERNARD,F.W.STULL,J.L.SMITH REVDAT 5 27-SEP-23 5IOS 1 REMARK REVDAT 4 27-NOV-19 5IOS 1 REMARK REVDAT 3 20-SEP-17 5IOS 1 JRNL REMARK REVDAT 2 22-JUN-16 5IOS 1 JRNL REVDAT 1 08-JUN-16 5IOS 0 JRNL AUTH F.W.STULL,S.M.BERNARD,A.SAPRA,J.L.SMITH,E.R.ZUIDERWEG, JRNL AUTH 2 B.A.PALFEY JRNL TITL DEPROTONATIONS IN THE REACTION OF FLAVIN-DEPENDENT JRNL TITL 2 THYMIDYLATE SYNTHASE. JRNL REF BIOCHEMISTRY V. 55 3261 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27214228 JRNL DOI 10.1021/ACS.BIOCHEM.6B00510 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 66829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3557 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 298 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7166 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 292 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.68000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.325 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7674 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7194 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10429 ; 1.483 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16509 ; 0.833 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 849 ; 5.949 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 368 ;34.671 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1289 ;13.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;16.052 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1106 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8270 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1876 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3420 ; 2.208 ; 3.395 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3419 ; 2.208 ; 3.394 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4261 ; 3.146 ; 5.073 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4262 ; 3.146 ; 5.074 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4254 ; 3.017 ; 3.790 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4255 ; 3.016 ; 3.790 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6169 ; 4.901 ; 5.503 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9161 ; 6.418 ;27.962 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9137 ; 6.405 ;27.941 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IOS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 89.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40-50% PEG 200, 0-150 MM NACL, 100 MM REMARK 280 TRIS-HCL PH 8.0, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.03550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.50350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.10850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.50350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.03550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.10850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ASP A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 GLU A 217 REMARK 465 VAL A 218 REMARK 465 GLN A 219 REMARK 465 VAL A 220 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 33 REMARK 465 GLY B 34 REMARK 465 LEU B 35 REMARK 465 LYS B 36 REMARK 465 ASP B 37 REMARK 465 GLN B 219 REMARK 465 VAL B 220 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 ASP C -8 REMARK 465 LYS C -7 REMARK 465 ILE C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 PHE C 31 REMARK 465 ASP C 32 REMARK 465 MET C 33 REMARK 465 GLY C 34 REMARK 465 LEU C 35 REMARK 465 GLN C 219 REMARK 465 VAL C 220 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 ASP D -8 REMARK 465 LYS D -7 REMARK 465 ILE D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 GLY D 34 REMARK 465 GLN D 219 REMARK 465 VAL D 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -153.36 57.60 REMARK 500 LYS A 36 -88.29 -133.80 REMARK 500 LEU B 6 -153.37 56.92 REMARK 500 ALA B 82 177.00 177.60 REMARK 500 LEU C 6 -146.86 60.20 REMARK 500 ALA C 82 173.98 178.81 REMARK 500 LEU C 106 58.78 -102.68 REMARK 500 LEU D 6 -149.11 56.52 REMARK 500 LYS D 36 -101.25 -121.35 REMARK 500 GLU D 217 14.09 -145.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IOQ RELATED DB: PDB REMARK 900 RELATED ID: 5IOR RELATED DB: PDB REMARK 900 RELATED ID: 5IOT RELATED DB: PDB DBREF 5IOS A 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 5IOS B 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 5IOS C 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 5IOS D 1 220 UNP Q9WYT0 THYX_THEMA 1 220 SEQADV 5IOS MET A -11 UNP Q9WYT0 INITIATING METHIONINE SEQADV 5IOS GLY A -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS SER A -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ASP A -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS LYS A -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ILE A -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS A -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS A -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS A -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS A -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS A -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS A 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ALA A 90 UNP Q9WYT0 ARG 90 ENGINEERED MUTATION SEQADV 5IOS MET B -11 UNP Q9WYT0 INITIATING METHIONINE SEQADV 5IOS GLY B -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS SER B -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ASP B -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS LYS B -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ILE B -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS B -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS B -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS B -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS B -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS B -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS B 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ALA B 90 UNP Q9WYT0 ARG 90 ENGINEERED MUTATION SEQADV 5IOS MET C -11 UNP Q9WYT0 INITIATING METHIONINE SEQADV 5IOS GLY C -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS SER C -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ASP C -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS LYS C -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ILE C -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS C -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS C -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS C -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS C -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS C -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS C 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ALA C 90 UNP Q9WYT0 ARG 90 ENGINEERED MUTATION SEQADV 5IOS MET D -11 UNP Q9WYT0 INITIATING METHIONINE SEQADV 5IOS GLY D -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS SER D -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ASP D -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS LYS D -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ILE D -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS D -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS D -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS D -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS D -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS D -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS HIS D 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOS ALA D 90 UNP Q9WYT0 ARG 90 ENGINEERED MUTATION SEQRES 1 A 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 A 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 A 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 A 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 A 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 A 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 A 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ALA TYR SER SEQRES 9 A 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 A 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 A 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 A 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 A 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 A 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 A 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 A 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 A 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 A 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 B 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 B 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 B 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 B 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 B 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 B 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 B 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ALA TYR SER SEQRES 9 B 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 B 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 B 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 B 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 B 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 B 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 B 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 B 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 B 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 B 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 C 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 C 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 C 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 C 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 C 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 C 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 C 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 C 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ALA TYR SER SEQRES 9 C 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 C 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 C 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 C 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 C 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 C 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 C 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 C 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 C 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 C 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 D 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 D 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 D 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 D 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 D 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 D 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 D 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 D 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ALA TYR SER SEQRES 9 D 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 D 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 D 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 D 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 D 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 D 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 D 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 D 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 D 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 D 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL HET FAD A 301 53 HET UMP A 302 20 HET UMP A 303 20 HET FAD B 301 53 HET FAD C 301 53 HET UMP C 302 20 HET FAD D 301 53 HET UMP D 302 20 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETSYN UMP DUMP FORMUL 5 FAD 4(C27 H33 N9 O15 P2) FORMUL 6 UMP 4(C9 H13 N2 O8 P) FORMUL 13 HOH *130(H2 O) HELIX 1 AA1 ASN A 19 VAL A 29 1 11 HELIX 2 AA2 ASP A 37 GLY A 52 1 16 HELIX 3 AA3 GLU A 54 HIS A 59 5 6 HELIX 4 AA4 ILE A 70 PHE A 77 1 8 HELIX 5 AA5 SER A 102 GLU A 107 5 6 HELIX 6 AA6 PRO A 114 SER A 139 1 26 HELIX 7 AA7 PRO A 142 ARG A 147 1 6 HELIX 8 AA8 ILE A 148 LEU A 150 5 3 HELIX 9 AA9 ALA A 164 ALA A 175 1 12 HELIX 10 AB1 GLN A 180 CYS A 198 1 19 HELIX 11 AB2 CYS A 198 ALA A 209 1 12 HELIX 12 AB3 ASN B 19 VAL B 29 1 11 HELIX 13 AB4 GLU B 39 HIS B 51 1 13 HELIX 14 AB5 GLU B 54 HIS B 59 5 6 HELIX 15 AB6 ILE B 70 PHE B 77 1 8 HELIX 16 AB7 SER B 102 GLU B 107 5 6 HELIX 17 AB8 PRO B 114 SER B 139 1 26 HELIX 18 AB9 PRO B 142 ARG B 147 1 6 HELIX 19 AC1 ILE B 148 LEU B 150 5 3 HELIX 20 AC2 ALA B 164 ALA B 175 1 12 HELIX 21 AC3 GLN B 180 CYS B 198 1 19 HELIX 22 AC4 CYS B 198 ALA B 209 1 12 HELIX 23 AC5 ASP B 213 VAL B 218 1 6 HELIX 24 AC6 ASN C 19 VAL C 29 1 11 HELIX 25 AC7 ASP C 37 HIS C 51 1 15 HELIX 26 AC8 GLU C 54 HIS C 59 5 6 HELIX 27 AC9 ILE C 70 PHE C 77 1 8 HELIX 28 AD1 SER C 102 GLU C 107 5 6 HELIX 29 AD2 PRO C 114 SER C 139 1 26 HELIX 30 AD3 PRO C 142 ARG C 147 1 6 HELIX 31 AD4 ILE C 148 LEU C 150 5 3 HELIX 32 AD5 ALA C 164 ALA C 175 1 12 HELIX 33 AD6 GLN C 180 CYS C 198 1 19 HELIX 34 AD7 CYS C 198 ALA C 209 1 12 HELIX 35 AD8 ASN D 19 VAL D 29 1 11 HELIX 36 AD9 SER D 30 ASP D 32 5 3 HELIX 37 AE1 ASP D 37 GLY D 52 1 16 HELIX 38 AE2 GLU D 54 HIS D 59 5 6 HELIX 39 AE3 ILE D 70 PHE D 77 1 8 HELIX 40 AE4 SER D 102 GLU D 107 5 6 HELIX 41 AE5 PRO D 114 SER D 139 1 26 HELIX 42 AE6 PRO D 142 ARG D 147 1 6 HELIX 43 AE7 ILE D 148 LEU D 150 5 3 HELIX 44 AE8 ALA D 164 ALA D 175 1 12 HELIX 45 AE9 GLN D 180 CYS D 198 1 19 HELIX 46 AF1 CYS D 198 ALA D 209 1 12 HELIX 47 AF2 ASP D 213 GLU D 217 5 5 SHEET 1 AA1 5 LYS A 2 ILE A 5 0 SHEET 2 AA1 5 GLY A 9 MET A 17 -1 O VAL A 11 N ILE A 3 SHEET 3 AA1 5 VAL A 61 PRO A 69 -1 O HIS A 65 N GLU A 12 SHEET 4 AA1 5 TYR A 155 ASN A 163 -1 O PHE A 158 N VAL A 66 SHEET 5 AA1 5 SER A 83 GLU A 86 -1 N ASN A 85 O PHE A 159 SHEET 1 AA2 5 LYS B 2 ILE B 5 0 SHEET 2 AA2 5 GLY B 9 MET B 17 -1 O VAL B 11 N ILE B 3 SHEET 3 AA2 5 VAL B 61 PRO B 69 -1 O VAL B 61 N MET B 17 SHEET 4 AA2 5 TYR B 155 ASN B 163 -1 O THR B 156 N ALA B 68 SHEET 5 AA2 5 SER B 83 GLU B 86 -1 N SER B 83 O THR B 161 SHEET 1 AA3 5 LYS C 2 ILE C 5 0 SHEET 2 AA3 5 GLY C 9 MET C 17 -1 O VAL C 11 N ILE C 3 SHEET 3 AA3 5 VAL C 61 PRO C 69 -1 O VAL C 61 N MET C 17 SHEET 4 AA3 5 TYR C 155 ASN C 163 -1 O PHE C 158 N VAL C 66 SHEET 5 AA3 5 SER C 83 GLU C 86 -1 N ASN C 85 O PHE C 159 SHEET 1 AA4 5 LYS D 2 ILE D 5 0 SHEET 2 AA4 5 GLY D 9 MET D 17 -1 O VAL D 11 N ILE D 3 SHEET 3 AA4 5 VAL D 61 PRO D 69 -1 O THR D 63 N VAL D 14 SHEET 4 AA4 5 TYR D 155 ASN D 163 -1 O PHE D 158 N VAL D 66 SHEET 5 AA4 5 SER D 83 GLU D 86 -1 N ASN D 85 O PHE D 159 SITE 1 AC1 24 ARG A 78 HIS A 79 ARG A 80 ILE A 81 SITE 2 AC1 24 ASN A 169 LEU A 173 ARG A 174 HIS A 178 SITE 3 AC1 24 UMP A 302 HOH A 405 HOH A 416 HOH A 421 SITE 4 AC1 24 HOH A 427 ASN B 85 GLU B 86 SER B 88 SITE 5 AC1 24 HOH B 422 THR C 55 GLU C 58 ILE C 81 SITE 6 AC1 24 ASN C 163 ARG C 165 FAD C 301 HOH C 414 SITE 1 AC2 12 ARG A 74 GLN A 75 ARG A 78 ARG A 174 SITE 2 AC2 12 FAD A 301 HOH A 407 HOH A 411 HOH A 425 SITE 3 AC2 12 GLU B 86 LEU B 87 SER B 88 ARG B 147 SITE 1 AC3 12 GLU A 86 LEU A 87 SER A 88 GLY A 89 SITE 2 AC3 12 ALA A 90 ARG A 147 HOH A 406 HOH A 408 SITE 3 AC3 12 GLN B 75 ARG B 78 ARG B 174 FAD B 301 SITE 1 AC4 24 SER A 83 ASN A 85 GLU A 86 SER A 88 SITE 2 AC4 24 UMP A 303 HOH A 424 ARG B 78 HIS B 79 SITE 3 AC4 24 ARG B 80 ILE B 81 ASN B 169 LEU B 173 SITE 4 AC4 24 ARG B 174 HIS B 178 HOH B 409 HOH B 413 SITE 5 AC4 24 HOH B 424 SER D 30 THR D 55 GLU D 58 SITE 6 AC4 24 ILE D 81 ASN D 163 ARG D 165 FAD D 301 SITE 1 AC5 23 SER A 30 THR A 55 GLU A 58 ILE A 81 SITE 2 AC5 23 ASN A 163 ARG A 165 FAD A 301 ARG C 78 SITE 3 AC5 23 HIS C 79 ARG C 80 ILE C 81 ASN C 169 SITE 4 AC5 23 LEU C 173 ARG C 174 HIS C 178 HOH C 408 SITE 5 AC5 23 HOH C 419 HOH C 436 SER D 83 ASN D 85 SITE 6 AC5 23 GLU D 86 SER D 88 UMP D 302 SITE 1 AC6 11 GLU C 86 LEU C 87 SER C 88 ARG C 147 SITE 2 AC6 11 HOH C 403 HOH C 418 ARG D 74 GLN D 75 SITE 3 AC6 11 ARG D 78 ARG D 174 FAD D 301 SITE 1 AC7 23 THR B 55 GLU B 58 ILE B 81 ASN B 163 SITE 2 AC7 23 ARG B 165 FAD B 301 HOH B 405 ASN C 85 SITE 3 AC7 23 GLU C 86 SER C 88 UMP C 302 HOH C 429 SITE 4 AC7 23 ARG D 78 HIS D 79 ARG D 80 ILE D 81 SITE 5 AC7 23 ASN D 169 LEU D 173 ARG D 174 HIS D 178 SITE 6 AC7 23 HOH D 407 HOH D 408 HOH D 420 SITE 1 AC8 12 GLN C 75 ARG C 78 ARG C 174 FAD C 301 SITE 2 AC8 12 HOH C 416 GLU D 86 LEU D 87 SER D 88 SITE 3 AC8 12 GLY D 89 ALA D 90 ARG D 147 HOH D 405 CRYST1 54.071 116.217 141.007 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007092 0.00000